Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq223 190 2e-43 seq48539 102 6e-17 seq8521 100 2e-16 seq8056 98.7 8e-16 >seq223 Length=511576 Score = 190 bits (210), Expect = 2e-43 Identities = 333/483 (69%), Gaps = 4/483 (1%) Strand=Plus/Plus Query 91473 ACCGCCCGGAAATTCCCAATCAATATCTACACCGTCAAAAAATTTCCAAACTTGCAAAAA 91532 |||||||||||||||||| |||||||| ||||||||||| || ||||| ||||| || Sbjct 113497 ACCGCCCGGAAATTCCCAGTCAATATCCACACCGTCAAAGAACTTCCAGGTTTGCAGGAA 113556 Query 91533 TTCTTTAACCGAATCAACGAACACGT--TTCTTCGTTTGACATCGTGCATAAAATAGAAC 91590 |||||| ||||| | ||||| |||| ||||| | ||| | ||| ||||||||| Sbjct 113557 TTCTTTTACCGAGGCTACGAAGACGTCCCGCTTCGCCT--TATCCTTCATGAAATAGAAC 113614 Query 91591 GGGTCCGACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAAATGCGGGTTGGCCAAC 91650 ||||| ||||| ||||||||||||||||| || | || ||| | | || | ||| Sbjct 113615 GGGTCTGACAACGTCCAGCCACCGATGGAAGGGACAATTTTCAGGTTTGGATAGGCTTTT 113674 Query 91651 TTGGCGGCCATTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTTCCAAGCGGATACACCT 91710 || ||||| | ||||||||| || || || ||||| | | | || ||| Sbjct 113675 TTCAGCGCCATCAGCTGACCAAAATTACCTTTATAAGGTGCTGAATATTCACTGACGCCT 113734 Query 91711 TTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAACTTTAAAATCATCGCGT 91770 | || || | || | || ||||| ||||||||||| | |||||||||||| | || Sbjct 113735 TGCTGAGGCATCTGCACCGCAGCCCAGGGATCGTGTATCGCAACTTTAAAATCCTGACGC 113794 Query 91771 CCTTTGCACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGTTTTGAGGGCATCGTTT 91830 || || | |||||||| | |||||| || || |||| | ||||| Sbjct 113795 CCCGCACAGGCGCGTTGCAAGGCCTGAAAACTGCCCTCAATGCTTTTTAAACTGTCGTTA 113854 Query 91831 AATCCATCGCCTCCGCAAATGGGTATAAAACCGTACAACAGATGGGACAAATTTGGCAGC 91890 | || || || |||||||| || | || |||||||| | ||| | || || || Sbjct 113855 ATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGTACAAGATATGTGTCAGGTTCTGCGCA 113914 Query 91891 GGCACCTTGTCGATTGGAAAGTTGCGTCCGTACACGCCCCATTCAACAAAGTACGCGGCG 91950 || | || || | | || ||| || ||||||||||| |||||||| || ||| | Sbjct 113915 GGGATTTTATCCACGGAGAATCCGCGACCATACACGCCCCACTCAACAAAATATGCGCCA 113974 Query 91951 ACG 91953 ||| Sbjct 113975 ACG 113977 >seq48539 Length=7100 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| |||||| ||||| || ||||||||||||||||| | Sbjct 6942 TCCACCACGCAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGA 6883 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||||||||| || || ||| |||| | || || ||||| ||| Sbjct 6882 AAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGG 6823 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||| | ||| || | | ||| || || ||| || Sbjct 6822 AATTCCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAAC 6763 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||||| ||||||| || | || || |||||||| |||||| Sbjct 6762 TTCCAAGGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATCTGCATT 6714 >seq8521 Length=40141 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| |||||| || || |||||||| ||||||||||||| Sbjct 2930 TCCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGA 2871 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||||||||| || || ||| |||| | || || ||||| ||| Sbjct 2870 AAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGG 2811 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||||||||| || | | || || || | ||| ||||| |||||| Sbjct 2810 GATACCTTCCTTATCCTGGATCT-TGGCTTTCACATTCTCAATTGTGTCTGAGGGCTCAA 2752 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || ||||||| ||||| ||||| || ||||| Sbjct 2751 CCTCTAGGGTGATGGTCTTCCCGGTCAGGGTTTTGACAAAGATCTGCAT 2703 >seq8056 Length=34938 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | | ||| | ||||| || |||||||| |||||||||||||||| Sbjct 32357 CCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAG 32298 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| || ||||| || | || | || || ||||| ||| Sbjct 32297 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGGG 32238 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||||||| ||||| |||||| | | ||| ||| || ||| ||| Sbjct 32237 ATGCCTTCCTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGACC 32178 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | ||||| || ||||| || || || || ||||| Sbjct 32177 TCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCAT 32131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379025762865330