Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq223 215 4e-51 >seq223 Length=511576 Score = 215 bits (238), Expect = 4e-51 Identities = 393/573 (69%), Gaps = 2/573 (0%) Strand=Plus/Plus Query 36371 CCGCCCGGAAATTCCCAATCAATATCGATGCCGTCGAAAAATTTCCATGTCAACACAAAT 36430 ||||||||||||||||| |||||||| | ||||| || || ||||| || || ||| Sbjct 113498 CCGCCCGGAAATTCCCAGTCAATATCCACACCGTCAAAGAACTTCCAGGTTTGCAGGAAT 113557 Query 36431 TCACGCACGGATTCGACAAAAATTTGTCGCGTTCGCGC-ATCGTGCATATGATAGAAGGG 36489 || || || | || || | | ||| ||||| ||| | ||| |||||| || Sbjct 113558 TCTTTTACCGAGGCTACGAAGACGTCCCGC-TTCGCCTTATCCTTCATGAAATAGAACGG 113616 Query 36490 ATCGGACAGTGTCCAACCGCCGATTGATGCCAACACTTTTAGATTGGGATTGGCCAATTT 36549 || |||| ||||| || ||||| || | | | ||| || || |||| ||| ||| Sbjct 113617 GTCTGACAACGTCCAGCCACCGATGGAAGGGACAATTTTCAGGTTTGGATAGGCTTTTTT 113676 Query 36550 TGCTGCCATTAATTGACCAAAATTGCCTTTGTAGGGTTCGTTCCATGCGCTAACGCCTGT 36609 ||||| | ||||||||||| ||||| || ||| | || | || |||||| Sbjct 113677 CAGCGCCATCAGCTGACCAAAATTACCTTTATAAGGTGCTGAATATTCACTGACGCCTTG 113736 Query 36610 TTGTGGTTTTTGGAGCGCCGCCCACGGATCGTGTATGGAAACTTTAAAATTGTCCCTGCC 36669 || || | || | ||| ||||| ||||||||||| | ||||||||||| | | || Sbjct 113737 CTGAGGCATCTGCACCGCAGCCCAGGGATCGTGTATCGCAACTTTAAAATCCTGACGCCC 113796 Query 36670 AGCGCACGATCTTTGCAACGCTTCAAAACTCCCCGTGATAGATTTTAAACTGTCGTTTAT 36729 || || | | |||||| || | |||||| ||| || ||||||||||||||| || Sbjct 113797 CGCACAGGCGCGTTGCAAGGCCTGAAAACTGCCCTCAATGCTTTTTAAACTGTCGTTAAT 113856 Query 36730 ACCGTCACCGCCGCAAATCGGTATAAATCCGTATAAAATGTGCGAAAGGTTCGGCGTGGG 36789 ||||| |||||||||||||| | || ||||| || || || | |||||| ||| || Sbjct 113857 CCCGTCCCCGCCGCAAATCGGCGTGAAGCCGTACAAGATATGTGTCAGGTTCTGCGCAGG 113916 Query 36790 CACTTTGTCCACGGGAAAAGATCGACCGTAAACGCCCCATTCGACAAAATAGGCCGCTAC 36849 | ||| ||||||| || ||||| || |||||||| || |||||||| || | || Sbjct 113917 GATTTTATCCACGGAGAATCCGCGACCATACACGCCCCACTCAACAAAATATGCGCCAAC 113976 Query 36850 GGTGTGATCAGTGTTGTACGTATACGGTTTATTGTTTTCTTGCCACGTGTATTGTAACGG 36909 | | ||| |||| |||| || | || ||||| | | |||| |||||| Sbjct 113977 GACCTTGCCAGACTTGTTGTTATAAGGCTGGTTATTTTCCTTCAGCGTGCTGGTTAACGG 114036 Query 36910 TTTTAAATGTTTACCATCGGTGTCTGCGATCAC 36942 | | ||| | || ||||| ||||| | ||| Sbjct 114037 TAGCAGATGACTGCCGTCGGTATCTGCCACCAC 114069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417953078761280