Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq742 349 4e-91 seq6691 136 5e-27 >seq742 Length=196864 Score = 349 bits (386), Expect = 4e-91 Identities = 1182/1816 (65%), Gaps = 55/1816 (3%) Strand=Plus/Minus Query 62085 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 62144 || |||||||| || || | || | |||| || || || || ||| || || || Sbjct 48873 TAATACATTCCAGTCTTCAAGCCCATCTTCCAGCCATAGAAGTGGATAGAAGTGAGCTTT 48814 Query 62145 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 62204 || | || ||||| | || || || | || |||||||| || || |||||||| Sbjct 48813 CCGTAGTTGGGCTCTGCCACGTGTATGTTGAAGGACTGACTTTGGTCAATAAAGGCTCCT 48754 Query 62205 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGT--GCAATTTCCCAAATAGTTTTATAAA 62262 | ||| || ||||| || || | || |||||| | ||||||||||| || || || | Sbjct 48753 CGGTCGGCTGCCATCTTGATCA--GTATTTTGTTGGAAATTTCCCAAACTGTCTTGTAGA 48696 Query 62263 C-TCGCTTAATATCTTCTGGAAGGTTTGTA--TTCTGAATGGATCCACCATCTACCATAA 62319 || || | ||| | | | | | || ||||||||||| | | || | Sbjct 48695 GATCTCTGATGTGCTTGGGTATTCTGTCCAGGTTTTGAATGGATCCGTTGTTGGCAATGA 48636 Query 62320 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62379 | ||| || || || || | ||| || | |||||| ||| | | || ||||| Sbjct 48635 TGAGATTTTTCATGTCGTCGTCCCACAAATCAGCCTCGGTCAAATCACGCAGTAGATGGT 48576 Query 62380 GGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62439 | || || || ||||||||||||||||| || || | ||||| || || || | | Sbjct 48575 GATTCACAACCTGGAATTCTCCAGACAAGACCCTTCTGGTGTAGATGTTGGAAGTGAAGG 48516 Query 62440 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499 |||| | || || || ||||| ||||| || || || || || || ||||| ||||| | Sbjct 48515 GTTCAAAGGATTCGTTGTTTCCTAAAATCTGGGCGGTGGAGGCGGTAGGCATGGGTGCGA 48456 Query 62500 CCAATAAACTATTTC-TAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTC 62558 || | | | ||| | | |||| | | ||| ||| |||| | |||| ||| Sbjct 48455 G-AAGCAGCGAGTTCCTGACTCCGTGTATCGCGATCTTAGCTTTCAAGGCAGCCCAGTTC 48397 Query 62559 CAAAGATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACT 62611 || | ||| | || | | ||| |||||| ||||| || || || Sbjct 48396 CACAAATCTGTAGGCTTCTTGTCCCACATCTC-------ATATTGAAGAATCCCTTTGCT 48344 Query 62612 GGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCG 62670 | | | || ||||| || || || |||| || |||||||| || || | ||||| | Sbjct 48343 GACAGGAC-ATCCTGGGTACGTCTCGTATGTACCCTCCTTCTCGGCCAGCTCGCAACTTG 48285 Query 62671 CCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCG 62730 | || | ||||||||||| | || ||||| || | | ||| ||| || |||| Sbjct 48284 CTTCCAGAGCACCGTAATACAATGTCTCAAATATTTGTTGATTCAGAAGCTGGGCTTTTT 48225 Query 62731 GGCTATCAAATGGATAAT----TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCA 62786 || ||||| || ||| |||||| || | || || || | ||||| | ||| Sbjct 48224 CACTCTCAAAAGGC-AATCTCATTAAGACAAAA---GCATCTGCCAGGCCTTGTATTCCA 48169 Query 62787 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 62846 |||||||| || | || | | | || || || ||||||||| | ||| ||| | ||| Sbjct 48168 ATACCGATGGGGCGGTGACGCATGTTCGATGTTCTAGCTTCTGGTACAGGGTAAAAGTTA 48109 Query 62847 ATATCTATAATTTTATTGAGATTT---CTGACAATTACTTTGACCACATCCTTCAGTTTG 62903 | || |||||||| || | |||| ||||| | ||| || |||||| || Sbjct 48108 ACGTCGATAATTTTGTTCAAATTTTTAGTGACAGT---CTTGGTTACGATCTTCAGCTTT 48052 Query 62904 AGAAAATCAAATCGCCCATCTAT-TACAAACATGTTCAATGCAACAGATGCCAGATTACA 62962 ||| || ||| | || ||| ||||||||| || | || | ||| |||| ||| || Sbjct 48051 TCAAAGTCGAATACCTTAT-TATCTACAAACATATTGACAGCGATAGAGGCCAAATTGCA 47993 Query 62963 CACGGCTACCTCA--TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 63020 || ||||| ||| || | | | |||| | ||| || ||||| || ||||| ||| Sbjct 47992 GACAGCTACTTCATCTTTGGA--AGTGTATTCAACTATTTCTGTGCAGAGGTTACTGCAC 47935 Query 63021 TTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 63080 || |||||||| | ||||||||| || |||||| ||| ||||| ||||| || || ||| Sbjct 47934 TTAATAGTTCCCAGATTTTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGTACAGCATG 47875 Query 63081 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA-GACGACTCGAGCCTT 63139 | || || || ||||| | |||||||| || || || |||| | | || | ||||| Sbjct 47874 TAGGGGGTTCCCGTTTCTACTTGAGATTCGATGATGGCCATCCACAAAGTCT-GCGCCTT 47816 Query 63140 TATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTC 63199 || | || | | | ||| |||||| | || |||| || || || || Sbjct 47815 GATCTTCTTCTTAGAACGACCTTCGGCTTCGTAGCGTGTGTACAGAGCCTCAAATTCTTC 47756 Query 63200 TCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 63259 |||||| | || || | ||| || | || ||||| | ||| || ||| Sbjct 47755 TCCCCAGCACTCGTGTAAGCCGGGAGCATCGTGGGGGCACATGAGACTCCAATCCTCGTT 47696 Query 63260 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTG 63318 || || || ||||| || ||||| || ||||| | ||| || |||| || | || Sbjct 47695 GCTCTCGACACGCTTCATGAACAGATCGGGGATCCACA-AGCCGTAGAATAAGTCACGTG 47637 Query 63319 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63378 | | |||||| ||||| ||||||||||| | || | ||| | | || || | | Sbjct 47636 CACGAACTTCCTCCTTTCCAGTATTCTTTTTCAAGTCTAAGAATTCAAATATGTCCGCGT 47577 Query 63379 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63438 ||||||| || | ||| || || | | |||| |||| |||||||||||||| |||| | Sbjct 47576 GCCACGGCTCAACGTAAATAGCGAAAGCTCCGGGCCTCTTGTTTCCTCCCTGGTCTACAT 47517 Query 63439 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63498 | | || |||||||| || || | || ||| || | | || || || | || || | Sbjct 47516 AGCGGGCCGTGTTATTGTACACACGCAGCATGGGGACCAACCCATTGGAGACTCCGTTAG 47457 Query 63499 TACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCC 63556 |||| | ||| ||| || |||| || || | | || ||| || || || || || Sbjct 47456 TACCCGCGATGTAGGAACCCTTGGCTCGGATGCAGT-GTACATGA-AGGCCGATACCTCC 47399 Query 63557 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATC 63616 || || || | | || || | || | ||||| ||||| ||||| || ||||| Sbjct 47398 AGCAGACTTGGAAACCAGGGCACACTGCTTCAGGGTGTCGTAGATCCCTTCAATACTATC 47339 Query 63617 ATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAA 63676 |||| ||||| ||||| || || ||||| || |||| | || | || || Sbjct 47338 ATCGCTCATGGCCAGTAGGAAGCAAGAAGACAGCTGAGGACGGGGCGTGGCTGCGGAGAA 47279 Query 63677 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63736 || ||||| ||||| || || |||| || || || || ||||| || ||||| || Sbjct 47278 TAGAGTAGGGCTGGCGTGAGTGAAGTATTTCTCTGACAGAAGGTTGTAAGTTTCAATGGC 47219 Query 63737 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63796 ||| || || || || || || || | || | ||| | |||||| || ||||| Sbjct 47218 TGAATCAATGTCTTCCCCGTGGATACCGACAGATACCCTCATGAGCATGTGTTGCGGTCT 47159 Query 63797 TTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63856 ||| |||| ||| | || |||| || || || ||||| |||||||| ||||| Sbjct 47158 TTCTACAACTTTCCCTTCGATCTTCAGCAGATATGAGCGCTCCAAGGTTTTAAATCCAAA 47099 Query 63857 ATAGTTGTA--TGAAA 63870 ||||| || ||||| Sbjct 47098 GTAGTTATAATTGAAA 47083 >seq6691 Length=42033 Score = 136 bits (150), Expect = 5e-27 Identities = 263/386 (68%), Gaps = 3/386 (1%) Strand=Plus/Plus Query 33417 TCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACT 33476 || || || ||||| ||||| ||||| || || ||||| || | ||| | || Sbjct 14045 TCGGCCACAAATTCAATATACTGCGACATCAGGTCGCAGTTCATGCCCAGTAGTCTGACG 14104 Query 33477 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTA 33536 || || || | || ||||| |||||||||||| || |||| | | ||| | Sbjct 14105 GGCAGGGCGTCGGTGAGAAACTCTTGTTCAATGATGACAGCATCCTTGACGATAGCTAGG 14164 Query 33537 ACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAG 33596 || | | || ||| |||| ||| ||||| ||||| | || || || |||||| Sbjct 14165 ACTCGTGCGGGGCTGGGTTTCTGTACTAAGTGTTTGAACATGAGGCAGGCAAAGTCGCAG 14224 Query 33597 TGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCA 33656 || ||||||||||||| || || ||||| || || | |||||||| |||||| Sbjct 14225 TGGAGACCCTCGTCTCGGGAGATCAACTCGTTGCTGAAGGTCAAGCCGGGCATGAGGCCA 14284 Query 33657 CGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCA 33716 ||||| || |||||||| ||||| || || ||||| ||||||||||||||||| | Sbjct 14285 CGCTTCTTCAGCCAAAAGATGGAGGCAAAACTGCCGGAGAAGAAGATTCCTTCTACGCAA 14344 Query 33717 GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC-ATG--TATCCACTTTTGAGCC 33773 || ||||| | | | ||| || | ||| |||| || ||||||| | ||| Sbjct 14345 GCGAAGGCCACCACACGCTCCCCGAAGGTGGCCGTGTCGCTGCCGATCCACTGCAGGGCC 14404 Query 33774 CAATCGGCCTTCTTTTTTACACAAGG 33799 || || |||||||| || ||||| || Sbjct 14405 CAGTCTGCCTTCTTCTTCACACACGG 14430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629275689191520