Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_003315.1 Length=31508 Score E Sequences producing significant alignments: (Bits) Value seq27378 100 6e-17 seq11346 91.5 3e-14 >seq27378 Length=7818 Score = 100 bits (110), Expect = 6e-17 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 353 ATTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTC 412 ||| ||||||||||||| || |||||||| ||||||| |||||| |||| |||||| Sbjct 3211 ATTGTTGGTGGGTCGTGGCGGGTTCGAACCGCCGACCAATTGATTAAGAGTCAACTGCTC 3270 Query 413 TACCGACTGAGCTAACGACCCAA 435 ||||||||||||||||||||||| Sbjct 3271 TACCGACTGAGCTAACGACCCAA 3293 >seq11346 Length=40623 Score = 91.5 bits (100), Expect = 3e-14 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 ||||||| |||| ||||||||||| ||||||| ||||||||||| |||||||||| Sbjct 35564 TGGTGGGCCGTGCTGGATTCGAACCAGCGACCAATTGATTAAAAGTCAACTGCTCTACCA 35505 Query 418 ACTGAGCTAACGACCCAATTAGATG 442 |||||||||||| |||| || ||| Sbjct 35504 ACTGAGCTAACGGCCCATCTAAATG 35480 Score = 87.8 bits (96), Expect = 4e-13 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 ||||||| |||| ||||||||||| ||||||| ||||||||||| |||||||||| Sbjct 35285 TGGTGGGCCGTGCTGGATTCGAACCAGCGACCAATTGATTAAAAGTCAACTGCTCTACCA 35226 Query 418 ACTGAGCTAACGACCC 433 |||||||||||| ||| Sbjct 35225 ACTGAGCTAACGGCCC 35210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100621684172760