Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq19589 145 2e-30 seq785 109 1e-19 >seq19589 Length=24186 Score = 145 bits (160), Expect = 2e-30 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 16822 TGCGGCGTTATTTTTCTGTATCGGCTGCTGTTCCGTATACGGATGTCTGGATGTATAAGC 16881 ||||||| ||| |||| || | ||| || | ||| || || |||||||||||| Sbjct 18333 TGCGGCGGCCTTTCACTGTGACGAGTCTTGTACCATTTACTGACGTGTGGATGTATAAGT 18392 Query 16882 CTGTACAGTATTACCTCGGCAAACATCCCTGTGAAAAACCGGCGGAGATGTTGCGTCAGA 16941 | || | |||||| | ||| |||||||| || ||||| |||||||||||| || | | | Sbjct 18393 CAGTTCCGTATTATCCCGGTAAACATCCGTGCGAAAAGCCGGCGGAGATGATGAGAGACA 18452 Query 16942 TAATTACCACCAGCAGTCGTCCGGGAGATCTGGTTGCAGATTTTTTCATGGGGTCGGGTT 17001 | || | | ||||||| || ||||| ||| | ||||| |||||||||||||| || |||| Sbjct 18453 TCATCAACGCCAGCAGCCGACCGGGTGATGTAGTTGCTGATTTTTTCATGGGATCAGGTT 18512 Query 17002 CGACGGTCAAAGCAGCGATGGCGCTGGGACGTCGTGCAATTGGCGTTGAGCTGGA 17056 | ||| | |||| ||| || |||||| ||| || | ||||| || || || Sbjct 18513 CCACGATAAAAGAAGCAATCAAGCTGGGCCGTTTCGCGCTGGGCGTGGAACTTGA 18567 >seq785 Length=396209 Score = 109 bits (120), Expect = 1e-19 Identities = 86/99 (87%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 17137 TACCGTTATTATCCTGCGCC-CGGCCCTTTAGCTAAGT-GGTGAGAGCGAGCGACTCATA 17194 |||||| || |||| || || ||||||||||||| ||| ||| ||||| |||||||||| Sbjct 187992 TACCGT-ATAATCCCGCACCTCGGCCCTTTAGCTCAGTTGGTTAGAGCACGCGACTCATA 187934 Query 17195 ATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA 17233 ||||| |||||||||||||| ||||||||||||||||| Sbjct 187933 ATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA 187895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136007136309396