Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq742 329 4e-85 seq6691 147 3e-30 >seq742 Length=196864 Score = 329 bits (364), Expect = 4e-85 Identities = 1172/1809 (65%), Gaps = 41/1809 (2%) Strand=Plus/Minus Query 64878 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 64937 || |||||||| || || | || | |||| || || || || ||| || || || Sbjct 48873 TAATACATTCCAGTCTTCAAGCCCATCTTCCAGCCATAGAAGTGGATAGAAGTGAGCTTT 48814 Query 64938 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 64997 || | || ||||| | || || || | || |||||||| || || |||||||| Sbjct 48813 CCGTAGTTGGGCTCTGCCACGTGTATGTTGAAGGACTGACTTTGGTCAATAAAGGCTCCT 48754 Query 64998 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGG--AATTTCCCAAATAGTTTTATAAA 65055 | ||| || ||||| || || | || |||||| | ||||||||||| || || || | Sbjct 48753 CGGTCGGCTGCCATCTTGATCA--GTATTTTGTTGGAAATTTCCCAAACTGTCTTGTAGA 48696 Query 65056 C-TCGCTTAATATCTTCTGGAAGGTTTGTA--TTCTGAATGGATCCACCATCTGCCATAA 65112 || || | ||| | | | | | || ||||||||||| | || || | Sbjct 48695 GATCTCTGATGTGCTTGGGTATTCTGTCCAGGTTTTGAATGGATCCGTTGTTGGCAATGA 48636 Query 65113 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 65172 | ||| || || || || | ||| || | |||||| ||| | | || ||||| Sbjct 48635 TGAGATTTTTCATGTCGTCGTCCCACAAATCAGCCTCGGTCAAATCACGCAGTAGATGGT 48576 Query 65173 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 65232 |||| || || || |||||||||||||| || || | ||||| || || || | | Sbjct 48575 GATTCACAACCTGGAATTCTCCAGACAAGACCCTTCTGGTGTAGATGTTGGAAGTGAAGG 48516 Query 65233 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 65292 |||| | || || || ||||| ||||| || || || || || || ||||| ||||| | Sbjct 48515 GTTCAAAGGATTCGTTGTTTCCTAAAATCTGGGCGGTGGAGGCGGTAGGCATGGGTGCGA 48456 Query 65293 CCAATAAACTATTTC-TAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTC 65351 || | | | ||| | | |||| | | ||| ||| |||| | | |||| ||| Sbjct 48455 G-AAGCAGCGAGTTCCTGACTCCGTGTATCGCGATCTTAGCTTTCAAGGCAGCCCAGTTC 48397 Query 65352 CAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTA 65410 || | ||| | || ||| ||||| || || ||| | | | Sbjct 48396 CACAAATCTGTAGGCTTCTTGTCCCACATCTCATATTGAAGAATCCCTTTGCTGACAGGA 48337 Query 65411 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 65470 | ||||| || || ||||||| || |||||||| || || || ||||| || || | Sbjct 48336 C-ATCCTGGGTACGTCTCGTATGTACCCTCCTTCTCGGCCAGCTCGCAACTTGCTTCCAG 48278 Query 65471 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATC 65530 ||||||||||| | || || || || | | ||| ||| || |||| || || Sbjct 48277 AGCACCGTAATACAATGTCTCAAATATTTGTTGATTCAGAAGCTGGGCTTTTTCACTCTC 48218 Query 65531 AAATGGATAAT----TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGA 65586 ||| || ||| |||||| || | || ||||| | ||||| | |||||||||| Sbjct 48217 AAAAGGC-AATCTCATTAAGACAAAA---GCATCTGCCAGGCCTTGTATTCCAATACCGA 48162 Query 65587 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 65646 | || | || | | | || || || ||||||||| | ||| ||| | |||| || | Sbjct 48161 TGGGGCGGTGACGCATGTTCGATGTTCTAGCTTCTGGTACAGGGTAAAAGTTAACGTCGA 48102 Query 65647 TAATTTTATTGAGATTT---CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT 65703 ||||||| || | |||| ||||| | ||| || |||||| || ||| | Sbjct 48101 TAATTTTGTTCAAATTTTTAGTGACAGT---CTTGGTTACGATCTTCAGCTTTTCAAAGT 48045 Query 65704 CAAATCGCTCATCTAT-TACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCT 65762 | ||| || || ||| ||||||||| || | || | ||| |||| ||| || || ||| Sbjct 48044 CGAATACCTTAT-TATCTACAAACATATTGACAGCGATAGAGGCCAAATTGCAGACAGCT 47986 Query 65763 ACCTCA--TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGG 65820 || ||| || | | | |||| | ||| || ||||| || ||||| ||||| || | Sbjct 47985 ACTTCATCTTTGGA--AGTGTATTCAACTATTTCTGTGCAGAGGTTACTGCACTTAATAG 47928 Query 65821 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAG 65880 |||| | ||||||||| || |||||| ||| ||||| ||||| || || ||| | || | Sbjct 47927 TTCCCAGATTTTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGTACAGCATGTAGGGGG 47868 Query 65881 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA-GACGACTCGAGCCTTTATTATA 65939 | || ||||| | |||||||| || || || |||| | | || | ||||| || | Sbjct 47867 TTCCCGTTTCTACTTGAGATTCGATGATGGCCATCCACAAAGTCT-GCGCCTTGATCTTC 47809 Query 65940 GATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAA 65999 || | | ||| |||||| |||| |||| || || || |||||||| Sbjct 47808 TTCTTAGAACGACCTTCGGCTTCGTAGCGTGTGTACAGAGCCTCAAATTCTTCTCCCCAG 47749 Query 66000 ACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 66059 | || || || ||| || | || ||||| | ||| || ||| || Sbjct 47748 CACTCGTGTAAGCCGGGAGCATCGTGGGGGCACATGAGACTCCAATCCTCGTTGCTCTCG 47689 Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATG 66118 || || ||||| || ||||| || ||||| | ||| || ||||| || | | | | Sbjct 47688 ACACGCTTCATGAACAGATCGGGGATCCACA-AGCCGTAGAATAAGTCACGTGCACGAAC 47630 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 |||||| ||||| ||||||||||| | || | ||| | | || || |||||||| Sbjct 47629 TTCCTCCTTTCCAGTATTCTTTTTCAAGTCTAAGAATTCAAATATGTCCGCGTGCCACGG 47570 Query 66179 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 66238 || | ||| || || | | |||| |||| |||||||||||||| |||| || | || Sbjct 47569 CTCAACGTAAATAGCGAAAGCTCCGGGCCTCTTGTTTCCTCCCTGGTCTACATAGCGGGC 47510 Query 66239 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGA 66298 |||||||| || || | || ||| || | | |||||||| || || || || | Sbjct 47509 CGTGTTATTGTACACACGCAGCATGGGGACCAACCCATTGGAGACTCCGTTAGTACCCGC 47450 Query 66299 GATATAGCTTCCACTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATT 66356 ||| ||| || | || || || | | || ||| || || || || || || Sbjct 47449 GATGTAGGAACCCTTGGCTCGGATGCAGT-GTACATGA-AGGCCGATACCTCCAGCAGAC 47392 Query 66357 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 66416 || || | | || || | || | || || ||||| || || ||||||||||| || Sbjct 47391 TTGGAAACCAGGGCACACTGCTTCAGGGTGTCGTAGATCCCTTCAATACTATCATCGCTC 47332 Query 66417 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 66476 ||| ||||| || || ||||| || |||| || | || |||| ||| Sbjct 47331 ATGGCCAGTAGGAAGCAAGAAGACAGCTGAGGACGGGGCGTGGCTGCGGAGAATAGAGTA 47272 Query 66477 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 66536 || ||||| || || |||| || || || || ||||| || ||||| ||||| || Sbjct 47271 GGGCTGGCGTGAGTGAAGTATTTCTCTGACAGAAGGTTGTAAGTTTCAATGGCTGAATCA 47212 Query 66537 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 66596 || || || || || || | || | ||| | |||||| || |||||||| || Sbjct 47211 ATGTCTTCCCCGTGGATACCGACAGATACCCTCATGAGCATGTGTTGCGGTCTTTCTACA 47152 Query 66597 ATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 66656 | || | || |||| || || || ||||| |||||||| ||||| ||||| Sbjct 47151 ACTTTCCCTTCGATCTTCAGCAGATATGAGCGCTCCAAGGTTTTAAATCCAAAGTAGTTA 47092 Query 66657 TA--TGAAA 66663 || ||||| Sbjct 47091 TAATTGAAA 47083 >seq6691 Length=42033 Score = 147 bits (162), Expect = 3e-30 Identities = 280/410 (68%), Gaps = 3/410 (1%) Strand=Plus/Plus Query 35993 TCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 36052 || || |||||||| ||||| ||||| || || ||||| || | ||| | || Sbjct 14045 TCGGCCACAAATTCAATATACTGCGACATCAGGTCGCAGTTCATGCCCAGTAGTCTGACG 14104 Query 36053 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATT 36112 || || || | || ||||| ||||||||||| ||| || || | | |||| || Sbjct 14105 GGCAGGGCGTCGGTGAGAAACTCTTGTTCAATGATGACAGCATCCTTGACGATAGCTAGG 14164 Query 36113 ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAG 36172 ||| | | || ||| | | ||| ||||| ||||| | || || || |||||| Sbjct 14165 ACTCGTGCGGGGCTGGGTTTCTGTACTAAGTGTTTGAACATGAGGCAGGCAAAGTCGCAG 14224 Query 36173 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 36232 || ||||||||||||| || || |||||| || || | |||||||| |||||| Sbjct 14225 TGGAGACCCTCGTCTCGGGAGATCAACTCGTTGCTGAAGGTCAAGCCGGGCATGAGGCCA 14284 Query 36233 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 36292 ||||| || |||||||| ||||| ||||| || || ||||| ||||||||||| Sbjct 14285 CGCTTCTTCAGCCAAAAGATGGAGGCAAAACTGCCGGAGAAGAAGATTCCTTCTACGCAA 14344 Query 36293 GCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC-ATG--TATCCACTTTTGAGCC 36349 || ||||| | | | ||| || | ||| |||| || ||||||| | ||| Sbjct 14345 GCGAAGGCCACCACACGCTCCCCGAAGGTGGCCGTGTCGCTGCCGATCCACTGCAGGGCC 14404 Query 36350 CAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399 || || |||||||| || ||||| || | ||||| | ||| || || || Sbjct 14405 CAGTCTGCCTTCTTCTTCACACACGGTAGGGTCTCCACAGCGTTGAAAAG 14454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657606491668560