Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq15718 122 7e-23 seq35 86.0 5e-12 >seq15718 Length=23337 Score = 122 bits (134), Expect = 7e-23 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 20994 CCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACC 21053 || ||||| | ||||||| || ||||| |||| ||| ||||||||| || ||||| Sbjct 3063 CCTGTGACCCGTGCGATCATATGAGTCAGCAGGGAATAGGAGGCGATGTTGAAAGGGACT 3122 Query 21054 CCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACG 21113 || ||||||||||||||| | |||||| ||||| |||||||| |||| |||||| Sbjct 3123 CCCAGGCCCATGTCGGCGCTGCGCTGGTAGAGCTGACAGGACAGGCGCCCCTCCGCCACG 3182 Query 21114 TAAAACTGACACAAAAC-GTGACAAGGAGGGAGAGCCATC-CGCGCGAGGTCCGCGGGGT 21171 || ||||| ||| | | ||| || || || || |||||| | || ||| | || | || Sbjct 3183 TAGAACTG-CACCAGGCAGTGGCACGGGGGCAGGGCCATCAGGGGCAAGGCCTGC-GCGT 3240 Query 21172 TCCACGCGCACATAACGATGCGCCGATC 21199 ||||| ||||| || |||||||| || Sbjct 3241 CCCACGAGCACAGCACCATGCGCCGGTC 3268 >seq35 Length=455554 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 21003 TGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCC 21062 || || |||| || | ||| || |||||||||||||| || ||||| | |||||| Sbjct 112696 TGCGCCATCATATGCACCAGCAGTGCGTAGCTGGCGATATTGAACGGCAAGCCGAGGAAG 112637 Query 21063 ATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGA 21122 || ||| || | |||||||||||||||||||| | || ||||| || ||||| Sbjct 112636 ATATCGCATGAGCGCTGGTACAGCTGGCAGGACAATTTACCGTCGGCCACATAGAACTGG 112577 Query 21123 CACAAAACGTGACAAGGAGGGAGAGCCATC 21152 | ||| |||| ||||| | || |||||| Sbjct 112576 AAGAAAGCGTGGCAAGGTGCCAGCGCCATC 112547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427417132564320