Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_003444.1
Length=37074
Score E
Sequences producing significant alignments: (Bits) Value
seq6760 275 1e-69
seq725 179 9e-41
seq19589 165 2e-36
>seq6760
Length=71796
Score = 275 bits (304), Expect = 1e-69
Identities = 377/527 (72%), Gaps = 0/527 (0%)
Strand=Plus/Plus
Query 19118 TTCTCATTTTTGATGATGTATTTTGGGCGATGTTTGCTTTCAATATAGATTCTGCCTATA 19177
|| ||||| || ||||| || ||| | |||||| | || ||||| || || || ||
Sbjct 16307 TTGTCATTCTTAATGATAAATCGTGGTCTTTGTTTGGTCTCGATATAAATCCTTCCGATG 16366
Query 19178 TATTCACCGAGAACACCAATCCCGATCAGTTGCACTCCACCCAAGAAAAGTATTGATACA 19237
|| ||||| || || ||||| || || || || | |||||| | |||||| || || ||
Sbjct 16367 TACTCACCTAGCACGCCAATACCTATTAGCTGGATTCCACCGAGGAAAAGAATAGAAACC 16426
Query 19238 AGCAGGGAGGGATACCCGCGTACTGGGTTACCAAAGACAAGGGTGTCTATAATCATCCAT 19297
| | || ||||| || | || ||||| ||||| | |||||||| |||||||| ||
Sbjct 16427 AAGATAGACGGATAACCATGAACGGGGTTGCCAAAAATGAGGGTGTCAATAATCATATAT 16486
Query 19298 GCACCATATAAAAATGAAATGCTTGCAACAAACAAACCTATATAAGTCCATACGCGAAGA 19357
|||| || || || | | || ||||| | ||||||||| ||||| | || ||
Sbjct 16487 ACACCGTAGGCGAAAGACAGACCGGCCACAAAAAGACCTATATACGTCCACATTCGCAGT 16546
Query 19358 GGAAAGGTTGAAAAACTTGTGATACCTTCCAGTGCCAGATTCCATAATTTCCAGCCATTA 19417
||||| ||||| || ||| || ||||| || || || ||||| | |||||| ||||||
Sbjct 16547 GGAAAAGTTGAGAACGATGTTATGCCTTCGAGAGCAAGGTTCCACAGTTTCCAACCATTA 16606
Query 19418 AATTTTGAGATGCCAGCAACGCGCTCTGCGCGTACATATTCAACGACATCTGTCTGACCA 19477
||||||| || |||||||| || | || |||||| || || || || |||||
Sbjct 16607 AATTTTGTCGAACCGGCAACGCGTTCATCTCGGGTATATTCGACAACTTCAGTGCGACCA 16666
Query 19478 CCCACCCAGCTCAGTATGCCTTTCATGAAAAGATTGCGCTCAGGCAACAGTTTAATGTTC 19537
|| ||||| ||| | ||||||||||| | || || ||||| | || ||||||||
Sbjct 16667 CCGACCCAAGACAGAACCCCTTTCATGAATAAGTTTCGTTCAGGGAGCAACTTAATGTTT 16726
Query 19538 TCCACAACCTCACGAGACATGAGTCGAAAATCTCCGACATTTTCCTCGATCTTTGGGGTG 19597
|| || || | |||||||| | | ||||| || || |||||||| ||||| || ||
Sbjct 16727 TCTACGACAGCGCGAGACATTAACCTGAAATCGCCAACGTTTTCCTCAATCTTAGGCTTG 16786
Query 19598 CTTATTTTGTTGTGTAACTTATAGAACCACTCAGCTGTCTTACGTTT 19644
|| || |||| || | |||||| ||||||||||| | ||||| ||
Sbjct 16787 CTGATCATGTTATGGAGCTTATAAAACCACTCAGCGCTTTTACGCTT 16833
>seq725
Length=236385
Score = 179 bits (198), Expect = 9e-41
Identities = 478/725 (66%), Gaps = 13/725 (2%)
Strand=Plus/Plus
Query 21221 GACATTCATCAATCAGCCTTTGTGCTTCATGGGGCTCCAGCCAGCGGATCCGTTTATTCT 21280
|||||||||||| ||| | ||| ||||||| || || ||||| | || || ||||| |
Sbjct 173925 GACATTCATCAACCAGGCGTTGCGCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTT 173984
Query 21281 TTGGTTGAGGCACTTTAATAATTGGTGCCTTATCCAGCATTTTCCATTCACGCTCTGCGG 21340
||| || || ||||| || | ||| || || |||||| |||||| || || |||||||
Sbjct 173985 TTGCCTGTGGGACTTTTATCACTGGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGG 174044
Query 21341 CTCTTAGTAGGGCCTTTATAAATGAAAGATGCGTAGCCTTCGTTGCAACGGACGCTGG-- 21398
| | || || | ||| || | | || || | ||||| || || | |||
Sbjct 174045 CGCGCAGCAGCGACTTCATCAGGGCGAGGTGTTTTGCCTTGGTGGCTGTG----CTGACC 174100
Query 21399 TTTTGGCGTGTATTCT--GGAACAGGTTTCCCTTTTTTCCTGCATGCTTCTGCCCTGAGT 21456
|| ||||| || || || | ||||| | ||| | | | || |
Sbjct 174101 TTCTGGCGCTCATACTTTGGCGCTTCGATCCCTCTCTTCGCCAAGGACTGTGAATGCAAC 174160
Query 21457 CTCCAGTTTTCCTCATGACGCCGGTTCGTCATTTTCTGGATTGCTGAATAAATTTTTGAT 21516
| ||||||| | || ||||| |||||| ||| || | || ||||| | |
Sbjct 174161 CGATGGTTTTCCGCTGCCCGGCGGTTAACCATTTTGCTGATCGCCGTGTAGATTTTGGCT 174220
Query 21517 TCAGTAATGTCTCTTAGTTGCATTCCTGCGAAATGTTGAAGCCAGAATCCGATCCGGCTT 21576
|| ||||| || | | | || ||| | ||||| ||||||||||| |||||||||
Sbjct 174221 TCGGTAATATCCTTCAACTTCACCCCTTCAAAATGCATCAGCCAGAATCCCATCCGGCTT 174280
Query 21577 TTGTCATCGTCCAGTGATTTTTGATGTGCTTTCTCTTCAAGCCACCTGACACACGCTTCC 21636
|||||||| ||||| ||||| | | || ||||| | |||||| | ||| || ||
Sbjct 174281 TTGTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTCCAACCACCTTAAACAGGCCTCT 174340
Query 21637 TCGAACGTTATATCAGGTATTTCACCAAGTTTGCTGACCCGCCATGCTTCAGCCTTTAGC 21696
|| || || | ||||| | || || || | | ||||| || | |||
Sbjct 174341 TCAAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTATTCGCCAGAGCTCTGATTTTCTT 174400
Query 21697 TTGTCATGGAG-TTCTGTCGCCTGCCTTTTGTCCTTTGTTCCAAGAGACTGTTTAAATCT 21755
||||| || || | |||| |||| ||| |||| | ||| |||||||| | ||||| |||
Sbjct 174401 TTGTCGTGCAGCTCCTGT-GCCTCCCTCTTGTTCGCTGTCCCAAGAGATTCTTTAAGTCT 174459
Query 21756 TTTACCGTTCGGCAATGTGAAACTGGCGTACCATATTTCACCTCTGCGGAAGAGTGACAT 21815
|| ||| ||||| | ||| || |||||||| || | |||||| ||||||| |||||
Sbjct 174460 TTGCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTTACCTCTACGGAAGATAGACAT 174519
Query 21816 TTTCTTTCCTCTGTTATGCCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGA 21875
|| ||||||| ||| |||||| | ||||| |||||| | | ||| |
Sbjct 174520 GTTTTTTCCTCGAGCATG---TCACCCTCACTCACGGCGACAGTGTTGATCGGTTTATTC 174576
Query 21876 AGAGCCGCAATGCAGGCTTGTCGTGTTGTGAGGTAAGGAGATTTACTCTTAGTGGGATCT 21935
|| || ||||| || ||||| || || || |||||| || || || | |||||
Sbjct 174577 AGTGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGGGACTTTGGTTTCGATGGATCC 174636
Query 21936 TTGCG 21940
|||||
Sbjct 174637 TTGCG 174641
Score = 152 bits (168), Expect = 1e-32
Identities = 152/197 (77%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 20683 GACTGGGACGAATTTGGGACCGATGGGTTCAGGATCGAGTCTATTTGCCGTGCGTGTTCG 20742
|| |||||| ||||||||| || | || | |||||| ||| ||||| ||
Sbjct 175478 GAGTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTCC 175537
Query 20743 GTAAGGTGATTAGGTGCAAGGTGAGCATATCGACGAACCATTTCGATAGACTCCCAGCCT 20802
|| | ||||| || || || || || ||||| || ||||| ||||| |||||||||||
Sbjct 175538 GTTAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCCG 175597
Query 20803 CCCATTTCCTGTAACACTGACAACGGGACTCCGGCTTGACCCAGCCAACTTGCCCAGGTG 20862
||||||||||| | |||||||||||||| ||||| ||| |||||| |||||||| |||
Sbjct 175598 CCCATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGTG 175657
Query 20863 TGTCTCAAGTCGTGAAA 20879
||||||| |||||||||
Sbjct 175658 TGTCTCAGGTCGTGAAA 175674
>seq19589
Length=24186
Score = 165 bits (182), Expect = 2e-36
Identities = 245/343 (71%), Gaps = 6/343 (2%)
Strand=Plus/Plus
Query 34840 CTGGAACAACCACACCACCAGCTGGTGGCATCTTATGATTCACTGAATCGCAAA--TATT 34897
||||||| || || || ||| |||| | ||| ||||| | ||| | | |||
Sbjct 18248 CTGGAACTTCCTCATCATCAGTTGGTAGTTGAATATCATTCATT--ATCCCGACGTTATG 18305
Query 34898 CTGAATTGCTGGATGAGTTTAAATCACTCCGGCGCTATTTCTCCGTATC-AGTCTCCGTG 34956
| || || |||||||| | || | | ||||| |||| | || | ||||| ||
Sbjct 18306 CGGATCTGGTGGATGAGCTAAAGCGATTGCGGCGGCCTTTCACTGTGACGAGTCTT-GTA 18364
Query 34957 CCTTATACCGATGTCTGGACGCATAAGCCCGTTCAGTTCTATCCGGGTAAACATCCGTGC 35016
|| | ||| || || |||| | ||||| | |||| || ||||| |||||||||||||||
Sbjct 18365 CCATTTACTGACGTGTGGATGTATAAGTCAGTTCCGTATTATCCCGGTAAACATCCGTGC 18424
Query 35017 GAGAAACCGGCGGATATGCTCCGGCAAATAATCAATGCCAGTAGTCGACCAGGCGATCTG 35076
|| || |||||||| ||| | | | || ||||| ||||| || ||||| || ||| |
Sbjct 18425 GAAAAGCCGGCGGAGATGATGAGAGACATCATCAACGCCAGCAGCCGACCGGGTGATGTA 18484
Query 35077 GTTGCTGATTTCTTTATGGGATCCGGTTCCACAATAAAAGCGGCAATGGCGCTGGGGCGT 35136
||||||||||| || |||||||| |||||||| ||||||| ||||| |||||| |||
Sbjct 18485 GTTGCTGATTTTTTCATGGGATCAGGTTCCACGATAAAAGAAGCAATCAAGCTGGGCCGT 18544
Query 35137 CAGGCGTTAGGTGTTGAACTTGAGTCAGAGCGGTTTAATCAGA 35179
||| | || || |||||||| || |||| ||| ||||
Sbjct 18545 TTCGCGCTGGGCGTGGAACTTGAAGAGGAACGGTATAAACAGA 18587
Score = 86.0 bits (94), Expect = 1e-12
Identities = 159/228 (70%), Gaps = 8/228 (4%)
Strand=Plus/Plus
Query 32492 CGGAGTCGCCGGAGTCTTTTATGTTACG---CCCAAAACGCCGCCGCTGGGTTAATGAAA 32548
||||| ||||||| |||| | || || ||| || |||||||| | | || |
Sbjct 14771 CGGAGACGCCGGAATCTT--ACCTT-CGTATCCCGAAGCGCCGCCGGTACGAAAACACGA 14827
Query 32549 AGTACACGCGCTGGGTTAAGACACAGCCGTG-TGCATGTTGTGGAAAGCCTGCTGATGAT 32607
| ||||| | ||||| ||| ||||| || ||| | ||||| || ||||||||
Sbjct 14828 AATACACCCAATGGGTAAAGCGCCAGCCATGCTGCG-GCTGTGGCAACGGGTCTGATGAT 14886
Query 32608 CCCCACCACCTGATAGGCCACGGTCAGGGTGGAATGGGTACAAAAGCGCATGACCTCTTT 32667
|| |||||| | | ||| | ||| || || |||| ||||||||||||||||| ||
Sbjct 14887 CCGCACCACATCACTGGCAATGGTTTTGGCGGTATGGCAACAAAAGCGCATGACCTGTTC 14946
Query 32668 GTGTTGCCTTTGTGCAGAAAGCATCACGACGAGCTGCATGCGGATACC 32715
||| | || |||||||| | ||||||| || |||||| |||||
Sbjct 14947 GTGATCCCGCTGTGCAGACGGTGTCACGACTCACTTCATGCGAATACC 14994
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 118418325231088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |