Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq6760 275 1e-69 seq725 179 9e-41 seq19589 165 2e-36 >seq6760 Length=71796 Score = 275 bits (304), Expect = 1e-69 Identities = 377/527 (72%), Gaps = 0/527 (0%) Strand=Plus/Plus Query 19118 TTCTCATTTTTGATGATGTATTTTGGGCGATGTTTGCTTTCAATATAGATTCTGCCTATA 19177 || ||||| || ||||| || ||| | |||||| | || ||||| || || || || Sbjct 16307 TTGTCATTCTTAATGATAAATCGTGGTCTTTGTTTGGTCTCGATATAAATCCTTCCGATG 16366 Query 19178 TATTCACCGAGAACACCAATCCCGATCAGTTGCACTCCACCCAAGAAAAGTATTGATACA 19237 || ||||| || || ||||| || || || || | |||||| | |||||| || || || Sbjct 16367 TACTCACCTAGCACGCCAATACCTATTAGCTGGATTCCACCGAGGAAAAGAATAGAAACC 16426 Query 19238 AGCAGGGAGGGATACCCGCGTACTGGGTTACCAAAGACAAGGGTGTCTATAATCATCCAT 19297 | | || ||||| || | || ||||| ||||| | |||||||| |||||||| || Sbjct 16427 AAGATAGACGGATAACCATGAACGGGGTTGCCAAAAATGAGGGTGTCAATAATCATATAT 16486 Query 19298 GCACCATATAAAAATGAAATGCTTGCAACAAACAAACCTATATAAGTCCATACGCGAAGA 19357 |||| || || || | | || ||||| | ||||||||| ||||| | || || Sbjct 16487 ACACCGTAGGCGAAAGACAGACCGGCCACAAAAAGACCTATATACGTCCACATTCGCAGT 16546 Query 19358 GGAAAGGTTGAAAAACTTGTGATACCTTCCAGTGCCAGATTCCATAATTTCCAGCCATTA 19417 ||||| ||||| || ||| || ||||| || || || ||||| | |||||| |||||| Sbjct 16547 GGAAAAGTTGAGAACGATGTTATGCCTTCGAGAGCAAGGTTCCACAGTTTCCAACCATTA 16606 Query 19418 AATTTTGAGATGCCAGCAACGCGCTCTGCGCGTACATATTCAACGACATCTGTCTGACCA 19477 ||||||| || |||||||| || | || |||||| || || || || ||||| Sbjct 16607 AATTTTGTCGAACCGGCAACGCGTTCATCTCGGGTATATTCGACAACTTCAGTGCGACCA 16666 Query 19478 CCCACCCAGCTCAGTATGCCTTTCATGAAAAGATTGCGCTCAGGCAACAGTTTAATGTTC 19537 || ||||| ||| | ||||||||||| | || || ||||| | || |||||||| Sbjct 16667 CCGACCCAAGACAGAACCCCTTTCATGAATAAGTTTCGTTCAGGGAGCAACTTAATGTTT 16726 Query 19538 TCCACAACCTCACGAGACATGAGTCGAAAATCTCCGACATTTTCCTCGATCTTTGGGGTG 19597 || || || | |||||||| | | ||||| || || |||||||| ||||| || || Sbjct 16727 TCTACGACAGCGCGAGACATTAACCTGAAATCGCCAACGTTTTCCTCAATCTTAGGCTTG 16786 Query 19598 CTTATTTTGTTGTGTAACTTATAGAACCACTCAGCTGTCTTACGTTT 19644 || || |||| || | |||||| ||||||||||| | ||||| || Sbjct 16787 CTGATCATGTTATGGAGCTTATAAAACCACTCAGCGCTTTTACGCTT 16833 >seq725 Length=236385 Score = 179 bits (198), Expect = 9e-41 Identities = 478/725 (66%), Gaps = 13/725 (2%) Strand=Plus/Plus Query 21221 GACATTCATCAATCAGCCTTTGTGCTTCATGGGGCTCCAGCCAGCGGATCCGTTTATTCT 21280 |||||||||||| ||| | ||| ||||||| || || ||||| | || || ||||| | Sbjct 173925 GACATTCATCAACCAGGCGTTGCGCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTT 173984 Query 21281 TTGGTTGAGGCACTTTAATAATTGGTGCCTTATCCAGCATTTTCCATTCACGCTCTGCGG 21340 ||| || || ||||| || | ||| || || |||||| |||||| || || ||||||| Sbjct 173985 TTGCCTGTGGGACTTTTATCACTGGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGG 174044 Query 21341 CTCTTAGTAGGGCCTTTATAAATGAAAGATGCGTAGCCTTCGTTGCAACGGACGCTGG-- 21398 | | || || | ||| || | | || || | ||||| || || | ||| Sbjct 174045 CGCGCAGCAGCGACTTCATCAGGGCGAGGTGTTTTGCCTTGGTGGCTGTG----CTGACC 174100 Query 21399 TTTTGGCGTGTATTCT--GGAACAGGTTTCCCTTTTTTCCTGCATGCTTCTGCCCTGAGT 21456 || ||||| || || || | ||||| | ||| | | | || | Sbjct 174101 TTCTGGCGCTCATACTTTGGCGCTTCGATCCCTCTCTTCGCCAAGGACTGTGAATGCAAC 174160 Query 21457 CTCCAGTTTTCCTCATGACGCCGGTTCGTCATTTTCTGGATTGCTGAATAAATTTTTGAT 21516 | ||||||| | || ||||| |||||| ||| || | || ||||| | | Sbjct 174161 CGATGGTTTTCCGCTGCCCGGCGGTTAACCATTTTGCTGATCGCCGTGTAGATTTTGGCT 174220 Query 21517 TCAGTAATGTCTCTTAGTTGCATTCCTGCGAAATGTTGAAGCCAGAATCCGATCCGGCTT 21576 || ||||| || | | | || ||| | ||||| ||||||||||| ||||||||| Sbjct 174221 TCGGTAATATCCTTCAACTTCACCCCTTCAAAATGCATCAGCCAGAATCCCATCCGGCTT 174280 Query 21577 TTGTCATCGTCCAGTGATTTTTGATGTGCTTTCTCTTCAAGCCACCTGACACACGCTTCC 21636 |||||||| ||||| ||||| | | || ||||| | |||||| | ||| || || Sbjct 174281 TTGTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTCCAACCACCTTAAACAGGCCTCT 174340 Query 21637 TCGAACGTTATATCAGGTATTTCACCAAGTTTGCTGACCCGCCATGCTTCAGCCTTTAGC 21696 || || || | ||||| | || || || | | ||||| || | ||| Sbjct 174341 TCAAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTATTCGCCAGAGCTCTGATTTTCTT 174400 Query 21697 TTGTCATGGAG-TTCTGTCGCCTGCCTTTTGTCCTTTGTTCCAAGAGACTGTTTAAATCT 21755 ||||| || || | |||| |||| ||| |||| | ||| |||||||| | ||||| ||| Sbjct 174401 TTGTCGTGCAGCTCCTGT-GCCTCCCTCTTGTTCGCTGTCCCAAGAGATTCTTTAAGTCT 174459 Query 21756 TTTACCGTTCGGCAATGTGAAACTGGCGTACCATATTTCACCTCTGCGGAAGAGTGACAT 21815 || ||| ||||| | ||| || |||||||| || | |||||| ||||||| ||||| Sbjct 174460 TTGCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTTACCTCTACGGAAGATAGACAT 174519 Query 21816 TTTCTTTCCTCTGTTATGCCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGA 21875 || ||||||| ||| |||||| | ||||| |||||| | | ||| | Sbjct 174520 GTTTTTTCCTCGAGCATG---TCACCCTCACTCACGGCGACAGTGTTGATCGGTTTATTC 174576 Query 21876 AGAGCCGCAATGCAGGCTTGTCGTGTTGTGAGGTAAGGAGATTTACTCTTAGTGGGATCT 21935 || || ||||| || ||||| || || || |||||| || || || | ||||| Sbjct 174577 AGTGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGGGACTTTGGTTTCGATGGATCC 174636 Query 21936 TTGCG 21940 ||||| Sbjct 174637 TTGCG 174641 Score = 152 bits (168), Expect = 1e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20683 GACTGGGACGAATTTGGGACCGATGGGTTCAGGATCGAGTCTATTTGCCGTGCGTGTTCG 20742 || |||||| ||||||||| || | || | |||||| ||| ||||| || Sbjct 175478 GAGTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTCC 175537 Query 20743 GTAAGGTGATTAGGTGCAAGGTGAGCATATCGACGAACCATTTCGATAGACTCCCAGCCT 20802 || | ||||| || || || || || ||||| || ||||| ||||| ||||||||||| Sbjct 175538 GTTAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCCG 175597 Query 20803 CCCATTTCCTGTAACACTGACAACGGGACTCCGGCTTGACCCAGCCAACTTGCCCAGGTG 20862 ||||||||||| | |||||||||||||| ||||| ||| |||||| |||||||| ||| Sbjct 175598 CCCATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGTG 175657 Query 20863 TGTCTCAAGTCGTGAAA 20879 ||||||| ||||||||| Sbjct 175658 TGTCTCAGGTCGTGAAA 175674 >seq19589 Length=24186 Score = 165 bits (182), Expect = 2e-36 Identities = 245/343 (71%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 34840 CTGGAACAACCACACCACCAGCTGGTGGCATCTTATGATTCACTGAATCGCAAA--TATT 34897 ||||||| || || || ||| |||| | ||| ||||| | ||| | | ||| Sbjct 18248 CTGGAACTTCCTCATCATCAGTTGGTAGTTGAATATCATTCATT--ATCCCGACGTTATG 18305 Query 34898 CTGAATTGCTGGATGAGTTTAAATCACTCCGGCGCTATTTCTCCGTATC-AGTCTCCGTG 34956 | || || |||||||| | || | | ||||| |||| | || | ||||| || Sbjct 18306 CGGATCTGGTGGATGAGCTAAAGCGATTGCGGCGGCCTTTCACTGTGACGAGTCTT-GTA 18364 Query 34957 CCTTATACCGATGTCTGGACGCATAAGCCCGTTCAGTTCTATCCGGGTAAACATCCGTGC 35016 || | ||| || || |||| | ||||| | |||| || ||||| ||||||||||||||| Sbjct 18365 CCATTTACTGACGTGTGGATGTATAAGTCAGTTCCGTATTATCCCGGTAAACATCCGTGC 18424 Query 35017 GAGAAACCGGCGGATATGCTCCGGCAAATAATCAATGCCAGTAGTCGACCAGGCGATCTG 35076 || || |||||||| ||| | | | || ||||| ||||| || ||||| || ||| | Sbjct 18425 GAAAAGCCGGCGGAGATGATGAGAGACATCATCAACGCCAGCAGCCGACCGGGTGATGTA 18484 Query 35077 GTTGCTGATTTCTTTATGGGATCCGGTTCCACAATAAAAGCGGCAATGGCGCTGGGGCGT 35136 ||||||||||| || |||||||| |||||||| ||||||| ||||| |||||| ||| Sbjct 18485 GTTGCTGATTTTTTCATGGGATCAGGTTCCACGATAAAAGAAGCAATCAAGCTGGGCCGT 18544 Query 35137 CAGGCGTTAGGTGTTGAACTTGAGTCAGAGCGGTTTAATCAGA 35179 ||| | || || |||||||| || |||| ||| |||| Sbjct 18545 TTCGCGCTGGGCGTGGAACTTGAAGAGGAACGGTATAAACAGA 18587 Score = 86.0 bits (94), Expect = 1e-12 Identities = 159/228 (70%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 32492 CGGAGTCGCCGGAGTCTTTTATGTTACG---CCCAAAACGCCGCCGCTGGGTTAATGAAA 32548 ||||| ||||||| |||| | || || ||| || |||||||| | | || | Sbjct 14771 CGGAGACGCCGGAATCTT--ACCTT-CGTATCCCGAAGCGCCGCCGGTACGAAAACACGA 14827 Query 32549 AGTACACGCGCTGGGTTAAGACACAGCCGTG-TGCATGTTGTGGAAAGCCTGCTGATGAT 32607 | ||||| | ||||| ||| ||||| || ||| | ||||| || |||||||| Sbjct 14828 AATACACCCAATGGGTAAAGCGCCAGCCATGCTGCG-GCTGTGGCAACGGGTCTGATGAT 14886 Query 32608 CCCCACCACCTGATAGGCCACGGTCAGGGTGGAATGGGTACAAAAGCGCATGACCTCTTT 32667 || |||||| | | ||| | ||| || || |||| ||||||||||||||||| || Sbjct 14887 CCGCACCACATCACTGGCAATGGTTTTGGCGGTATGGCAACAAAAGCGCATGACCTGTTC 14946 Query 32668 GTGTTGCCTTTGTGCAGAAAGCATCACGACGAGCTGCATGCGGATACC 32715 ||| | || |||||||| | ||||||| || |||||| ||||| Sbjct 14947 GTGATCCCGCTGTGCAGACGGTGTCACGACTCACTTCATGCGAATACC 14994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118418325231088