Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6691 138 1e-27 seq48539 118 1e-21 seq8056 118 1e-21 seq15643 98.7 1e-15 seq8521 96.9 3e-15 >seq6691 Length=42033 Score = 138 bits (152), Expect = 1e-27 Identities = 365/542 (67%), Gaps = 13/542 (2%) Strand=Plus/Minus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 |||||||| | || | | ||||||||| || |||| || ||||| || | |||| Sbjct 14450 TCAACGCTGTGGAGACCCTACCGTGTGTGAAGAAGAAGGCAGACTGGGCCCTGCAGTGGA 14391 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 ||| | ||||| ||||| || | || ||| |||| || || ||| || ||||| Sbjct 14390 TCGGCAGCGACACGGCCACCTTCGGGGAGCGTGTGGTGGCCTTCGCTTGCGTAGAAGGAA 14331 Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCC 52710 | || || || || |||||||| | || |||| | || || | ||| | | |||||| Sbjct 14330 TCTTCTTCTCCGGCAGTTTTGCCTCCATCTTTTGGCTGAAGAAGCGTGGCC-TCATGCCC 14272 Query 52711 GGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCG 52770 ||| | || || |||||||||||||| || || ||||| || | ||| || ||||| Sbjct 14271 GGCTTGACCTTCAGCAACGAGTTGATCTCCCGAGACGAGGGTCTCCACTGCGACTTTGCC 14212 Query 52771 TGTTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACATG 52830 || | || | | || | || ||||| | | | | | | |||| || Sbjct 14211 TGCCT-CATGTTCAAACACTTAGTACAGAAACCCAGCC--CCGCACGAGTCCTAGCTATC 14155 Query 52831 TTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTG 52890 | || || || ||| ||||||| |||||||| | || ||||| | ||||| | | Sbjct 14154 GTCAAGGATGCTGTCATCATTGAACAAGAGTTTCTCACCGACGCCCTGCCCGTCAGACTA 14095 Query 52891 TTGGGCATGAAC-GCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTT 52949 ||||||||||| |||||| |||||| |||| || || ||||| || ||| | || || Sbjct 14094 CTGGGCATGAACTGCGACC-TGATGTCGCAGTATATTGAATTTGTGGCCGACCGGCTCTT 14036 Query 52950 GATGCAGCTCGG-TCAGCCGAAATACTA-TAATGCGCGTAACCCCTTTTCGTTTATGAAC 53007 | || | || || | ||| || |||| || | | |||||||| || ||| || Sbjct 14035 GGTGGACCTGGGCTGTGCC-AAGCACTACGGATCCAAG-AACCCCTTCAGCTTCATGGAC 13978 Query 53008 AACATATCGCTCGAGGGCAAAACAAACTTTTTCGAG-AGACGTGTGGGCGAGTACAAAAT 53066 | || || || || ||||| || ||||| |||||| ||| | || || || ||| ||| Sbjct 13977 ATGATCTCCCTGGAAGGCAAGACCAACTTCTTCGAGAAGAAG-GTTGGGGAATACCAAAA 13919 Query 53067 GT 53068 || Sbjct 13918 GT 13917 >seq48539 Length=7100 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||| | || ||||| | || || || ||||| || || |||||| Sbjct 6486 GCCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGA 6427 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | |||||| | ||| || ||||| | ||||| | |||||||| ||||| Sbjct 6426 GAGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGG 6367 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| |||||| || | || || | || |||| ||||||| Sbjct 6366 GATACCTTCTTTGTCT-TGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCA 6308 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||||||| ||||| ||||| ||||| || ||||| Sbjct 6307 CCTCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 6259 >seq8056 Length=34938 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||| | || || || | || ||||| || || || || |||||| Sbjct 32130 GCCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGA 32071 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| | ||||| ||||| |||| |||||||| ||||| ||||| Sbjct 32070 AAGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGG 32011 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| |||| | |||| | ||| | || || | |||||| | Sbjct 32010 AATTCCTTCTTTGTC-TTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAA 31952 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | |||||| |||||||| ||||| ||||| || ||||| Sbjct 31951 CCTCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 31903 >seq15643 Length=27379 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | || | |||||||||| || ||||| || || || || ||||| Sbjct 12273 CCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGAA 12214 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || ||||||||||| || || |||||| | |||||||| ||||| Sbjct 12213 AGGGTACGTCCA-TCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGG 12155 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| || ||| | | ||| | ||||| | |||||| || Sbjct 12154 GATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTAC 12095 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | || || || || | || || ||||| || ||||| Sbjct 12094 CTCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 12047 >seq8521 Length=40141 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| || ||||||||||| || Sbjct 2245 CCACCACGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGAG 2186 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| ||||| || || || |||||| | |||||||| || || Sbjct 2185 AGGGTACGTCCA-TCTTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGG 2127 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| || ||| | | || | |||||| | |||||| || Sbjct 2126 GATACCTTCCTTATCCTGGATCTTGGCTTTCACATTCTCAATTGTGTCAGAGGGCTCAAC 2067 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||| | ||| | ||||||||||| | || || ||||| || |||||| || Sbjct 2066 CTCTAGGGTGATTGTCTTGCCGGTAAGGGTCTTCACGAAAATCTGCATACCT 2015 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||||||||| ||||| || ||| Sbjct 2929 CCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGAA 2870 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| | || || || ||| |||||| | |||||||| || || Sbjct 2869 AGGGTACGTCCA-TCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGG 2811 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| || ||| | | || | |||||| | |||||| || Sbjct 2810 GATACCTTCCTTATCCTGGATCTTGGCTTTCACATTCTCAATTGTGTCTGAGGGCTCAAC 2751 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | ||||| ||||||| ||||| || || || |||||| Sbjct 2750 CTCTAGGGTGATGGTCTTCCCGGTCAGGGTTTTGACAAAGATCTGCATA 2702 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 ||||||||||| || ||||| || || | || | || | ||||| ||||| || || Sbjct 2671 GTAGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTACGTCCA-TCTTCCAGCTGCTTTCC 2613 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || |||||| | |||||||| || || || ||||| ||||| ||| || || Sbjct 2612 GGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTGGCCTT 2553 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| |||||| ||||| | ||| | ||||| || |||| || Sbjct 2552 AACATTCTCTATGGTGTCGGAGGGCTCAACCTCGAGGGTGATTGTCTTCCCAGTCAGAGT 2493 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 2492 CTTGACGAAGATCTGCATA 2474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495637174132800