Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq742 358 1e-93 seq6691 149 9e-31 >seq742 Length=196864 Score = 358 bits (396), Expect = 1e-93 Identities = 1181/1807 (65%), Gaps = 37/1807 (2%) Strand=Plus/Minus Query 78757 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTG 78816 || |||||||| || || | || | |||| || ||||| || ||| || || || Sbjct 48873 TAATACATTCCAGTCTTCAAGCCCATCTTCCAGCCATAGAAGTGGATAGAAGTGAGCTTT 48814 Query 78817 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 78876 || | || ||||| | || || || | || |||||||| || || |||||||| Sbjct 48813 CCGTAGTTGGGCTCTGCCACGTGTATGTTGAAGGACTGACTTTGGTCAATAAAGGCTCCT 48754 Query 78877 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGG--AATTTCCCAAATAGTTTTATAAA 78934 | ||| || ||||| || || | || |||||| | ||||||||||| || || || | Sbjct 48753 CGGTCGGCTGCCATCTTGATCA--GTATTTTGTTGGAAATTTCCCAAACTGTCTTGTAGA 48696 Query 78935 C-TCGCTTAATATCTTCTGGAAGGTTTGTA--TTCTGAATGGATCCACCATCTGCCATAA 78991 || || | ||| | | | | | || ||||||||||| | || || | Sbjct 48695 GATCTCTGATGTGCTTGGGTATTCTGTCCAGGTTTTGAATGGATCCGTTGTTGGCAATGA 48636 Query 78992 TCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 79051 | ||| || || || || | ||| || | |||||| ||| | | || ||||| Sbjct 48635 TGAGATTTTTCATGTCGTCGTCCCACAAATCAGCCTCGGTCAAATCACGCAGTAGATGGT 48576 Query 79052 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATG 79111 |||| || || || |||||||||||||| || || | ||||| || || || | | Sbjct 48575 GATTCACAACCTGGAATTCTCCAGACAAGACCCTTCTGGTGTAGATGTTGGAAGTGAAGG 48516 Query 79112 GTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCA 79171 |||| | ||||| || ||||| ||||| || || || || || || ||||| ||||| | Sbjct 48515 GTTCAAAGGATTCGTTGTTTCCTAAAATCTGGGCGGTGGAGGCGGTAGGCATGGGTGCGA 48456 Query 79172 CCAATAAACTATTTC-TAAGACCGTATGATCT-GATTTTATCTTTTAGAGATTCCCAATC 79229 || | | | ||| | | |||| | ||| ||| ||| |||| | | |||| | Sbjct 48455 G-AAGCAGCGAGTTCCTGACTCCGTGT-ATCGCGATCTTAGCTTTCAAGGCAGCCCAGTT 48398 Query 79230 CCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTA 79289 ||| | ||| | || | ||| | |||||||| ||||| || || || | Sbjct 48397 CCACAAATCTGTAGGCTTCTTGTCCCACATCTCATATTGAAGAATCCCTTTGCTGACAGG 48338 Query 79290 TGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAA 79349 |||||| ||| || || || | || ||||| ||||| | || ||||| || || | Sbjct 48337 ACATCCTGGGTACGTCTCGTATGTACCCTCCTTCTCGGCCAGCTCGCAACTTGCTTCCAG 48278 Query 79350 TGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATC 79409 || |||||||| | || || || || | | ||| ||| || |||| | || || Sbjct 48277 AGCACCGTAATACAATGTCTCAAATATTTGTTGATTCAGAAGCTGGGCTTTTTCACTCTC 48218 Query 79410 AAATGGATAAT----TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGA 79465 ||| || ||| |||||| || | || ||||| | ||||| | |||||||||| Sbjct 48217 AAAAGGC-AATCTCATTAAGACAAAA---GCATCTGCCAGGCCTTGTATTCCAATACCGA 48162 Query 79466 TAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 79525 | || | || | | | || || || ||||||||| | ||| ||| | |||| || | Sbjct 48161 TGGGGCGGTGACGCATGTTCGATGTTCTAGCTTCTGGTACAGGGTAAAAGTTAACGTCGA 48102 Query 79526 TAATTTTATTGAGATTCCTGACTATTACT-TTGACCACATCCTTTAGTTTGAGAAAATCA 79584 ||||||| || | ||| | | | | | ||| || ||| || || ||| || Sbjct 48101 TAATTTTGTTCAAATTTTT-AGTGACAGTCTTGGTTACGATCTTCAGCTTTTCAAAGTCG 48043 Query 79585 AATCGTCCATCTAT-TACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTAC 79643 ||| || ||| ||||||||| || | |||| ||| |||| ||| || || ||||| Sbjct 48042 AATACCTTAT-TATCTACAAACATATTGACAGCGATAGAGGCCAAATTGCAGACAGCTAC 47984 Query 79644 CTCAT--TAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTT 79701 |||| | | | | |||| | |||||| |||||||||||||| |||||||| ||| Sbjct 47983 TTCATCTTTGGAAGTG--TATTCAACTATTTCTGTGCAGAGGTTACTGCACTTAATAGTT 47926 Query 79702 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTA 79761 || | ||||||||| || |||||| ||| ||||| ||||| || || ||| | || || Sbjct 47925 CCCAGATTTTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGTACAGCATGTAGGGGGTT 47866 Query 79762 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA-GACGACTCGAGCCTTTATTATAGA 79820 || ||||| | |||||||| || || || |||| | | || | ||||| || | Sbjct 47865 CCCGTTTCTACTTGAGATTCGATGATGGCCATCCACAAAGTCT-GCGCCTTGATCTTCTT 47807 Query 79821 CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAAC 79880 ||| | | ||| |||||| |||| || | || || || |||||||| Sbjct 47806 CTTAGAACGACCTTCGGCTTCGTAGCGTGTGTACAGAGCCTCAAATTCTTCTCCCCAGCA 47747 Query 79881 ATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTAC 79940 |||| ||| || ||| |||| || ||||| | ||| || | | || || Sbjct 47746 CTCGTGTAAGCCGGGAGCATCGTGGGGGCACATGAGACTCCAATCCTCGTTGCTCTCGAC 47687 Query 79941 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCT 79999 || ||||| || ||||| || ||||| | ||| || |||| || | | | | | Sbjct 47686 ACGCTTCATGAACAGATCGGGGATCCACA-AGCCGTAGAATAAGTCACGTGCACGAACTT 47628 Query 80000 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 80059 |||| ||||| ||||||||||| | || | ||| | | || || | |||||||| | Sbjct 47627 CCTCCTTTCCAGTATTCTTTTTCAAGTCTAAGAATTCAAATATGTCCGCGTGCCACGGCT 47568 Query 80060 CCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 80119 | | ||| || || | | |||| || | |||||||||||||| |||| || | || | Sbjct 47567 CAACGTAAATAGCGAAAGCTCCGGGCCTCTTGTTTCCTCCCTGGTCTACATAGCGGGCCG 47508 Query 80120 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGA 80179 ||||||| || || | || ||| || | | |||||||| || || || || | || Sbjct 47507 TGTTATTGTACACACGCAGCATGGGGACCAACCCATTGGAGACTCCGTTAGTACCCGCGA 47448 Query 80180 TATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 80237 | ||| || |||| || || | | || ||| || || || || || || || Sbjct 47447 TGTAGGAACCCTTGGCTCGGATGCAGT-GTACATGA-AGGCCGATACCTCCAGCAGACTT 47390 Query 80238 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT 80297 || | | || || | || | || || ||||| || || || |||||||| |||| Sbjct 47389 GGAAACCAGGGCACACTGCTTCAGGGTGTCGTAGATCCCTTCAATACTATCATCGCTCAT 47330 Query 80298 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGG 80357 | ||||| || || ||||| || |||| || | || |||| ||||| Sbjct 47329 GGCCAGTAGGAAGCAAGAAGACAGCTGAGGACGGGGCGTGGCTGCGGAGAATAGAGTAGG 47270 Query 80358 AGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTAT 80417 ||||| || || |||| || ||||| || ||||| || ||||| ||||| || || Sbjct 47269 GCTGGCGTGAGTGAAGTATTTCTCTGACAGAAGGTTGTAAGTTTCAATGGCTGAATCAAT 47210 Query 80418 ATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 80477 || || || || || | || | ||| | |||||| || |||||||| || | Sbjct 47209 GTCTTCCCCGTGGATACCGACAGATACCCTCATGAGCATGTGTTGCGGTCTTTCTACAAC 47150 Query 80478 CTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 80537 || | || |||| || || || ||||| |||||||| ||||| ||||| || Sbjct 47149 TTTCCCTTCGATCTTCAGCAGATATGAGCGCTCCAAGGTTTTAAATCCAAAGTAGTTATA 47090 Query 80538 --TGAAA 80542 ||||| Sbjct 47089 ATTGAAA 47083 >seq6691 Length=42033 Score = 149 bits (164), Expect = 9e-31 Identities = 266/386 (69%), Gaps = 3/386 (1%) Strand=Plus/Plus Query 49795 TCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 49854 || || |||||||| ||||| ||||| || || ||||| || | ||| | || Sbjct 14045 TCGGCCACAAATTCAATATACTGCGACATCAGGTCGCAGTTCATGCCCAGTAGTCTGACG 14104 Query 49855 GGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTA 49914 || || || | || ||||| |||||||||||| || ||||| | | |||| | Sbjct 14105 GGCAGGGCGTCGGTGAGAAACTCTTGTTCAATGATGACAGCATCCTTGACGATAGCTAGG 14164 Query 49915 ACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAG 49974 || | | || ||| || | ||| ||||| ||||| | || || || |||||| Sbjct 14165 ACTCGTGCGGGGCTGGGTTTCTGTACTAAGTGTTTGAACATGAGGCAGGCAAAGTCGCAG 14224 Query 49975 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 50034 || ||||||||||||| || | |||||| || || | |||||||| |||||| Sbjct 14225 TGGAGACCCTCGTCTCGGGAGATCAACTCGTTGCTGAAGGTCAAGCCGGGCATGAGGCCA 14284 Query 50035 CGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCG 50094 ||||| || |||||||| ||||| ||||| || || ||||||||||||||||| Sbjct 14285 CGCTTCTTCAGCCAAAAGATGGAGGCAAAACTGCCGGAGAAGAAGATTCCTTCTACGCAA 14344 Query 50095 GCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC-ATG--TATCCACTTTTGAGCC 50151 || ||||| || | | ||| || | |||| |||| || ||||||| | ||| Sbjct 14345 GCGAAGGCCACCACACGCTCCCCGAAGGTGGCCGTGTCGCTGCCGATCCACTGCAGGGCC 14404 Query 50152 CAATCGGCCTTCTTTTTTACACAAGG 50177 || || |||||||| || ||||| || Sbjct 14405 CAGTCTGCCTTCTTCTTCACACACGG 14430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717650783567760