Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq48539 98.7 8e-16 >seq48539 Length=7100 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| || || | | |||||| |||| ||| |||||||| | |||||||||||| Sbjct 6486 GCCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGA 6427 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || |||| ||||| || ||||| || ||||||| | ||| ||||| | || Sbjct 6426 GAGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGG 6367 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || || | || || | ||| || ||| || ||| || Sbjct 6366 GATACCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCAC 6307 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 || | ||||| || || || || | |||||||| ||||| ||||| || || Sbjct 6306 CTCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATGTTGTT 6253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381049663560372