Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq742 316 3e-81 seq6691 125 1e-23 >seq742 Length=196864 Score = 316 bits (350), Expect = 3e-81 Identities = 1170/1809 (65%), Gaps = 41/1809 (2%) Strand=Plus/Minus Query 70840 TAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 70899 || ||||| || || || | || | |||| || || || || ||| || || || Sbjct 48873 TAATACATTCCAGTCTTCAAGCCCATCTTCCAGCCATAGAAGTGGATAGAAGTGAGCTTT 48814 Query 70900 GAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCC 70959 ||| | || || || | ||| || || | ||||||||||| || || |||||||| Sbjct 48813 CCGTAGTTGGGCTCTGCCACGTGTATGTTGAAGGACTGACTTTGGTCAATAAAGGCTCCT 48754 Query 70960 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGG--AATTTCCCAAATAGTTTTATAAA 71017 | ||| || ||||| || || | || |||||| | ||||||||||| || || || | Sbjct 48753 CGGTCGGCTGCCATCTTGATCA--GTATTTTGTTGGAAATTTCCCAAACTGTCTTGTAGA 48696 Query 71018 C-TCGCTTAATATCTTCTGGAAGGTTTGTA--TTCTGAATGGATCCACCATCTGCAATAA 71074 || || | ||| | | | | | || ||||||||||| | ||||| | Sbjct 48695 GATCTCTGATGTGCTTGGGTATTCTGTCCAGGTTTTGAATGGATCCGTTGTTGGCAATGA 48636 Query 71075 TCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAG 71134 | |||||| || || || | ||| || | |||||| ||| | | || ||||| Sbjct 48635 TGAGATTTTTCATGTCGTCGTCCCACAAATCAGCCTCGGTCAAATCACGCAGTAGATGGT 48576 Query 71135 GATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACG 71194 |||| || || || |||||||||||||| || || | ||||| || || || | | Sbjct 48575 GATTCACAACCTGGAATTCTCCAGACAAGACCCTTCTGGTGTAGATGTTGGAAGTGAAGG 48516 Query 71195 GTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 71254 |||| | || || || ||||| ||||| || || || || || || ||||| ||||| | Sbjct 48515 GTTCAAAGGATTCGTTGTTTCCTAAAATCTGGGCGGTGGAGGCGGTAGGCATGGGTGCGA 48456 Query 71255 CCAATAGACTATTTCTAAGACCATGTGATCG-GATTTTATCTTTTAGAGATTCCCAATTC 71313 | || || || | || ||| |||| ||| ||| |||| | | |||| ||| Sbjct 48455 GAAGCAGCGAGTTCCTGACTCCGTGT-ATCGCGATCTTAGCTTTCAAGGCAGCCCAGTTC 48397 Query 71314 CAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTAT 71373 || | ||| | || || || || || | Sbjct 48396 CACAAATCTGTAGGCTTCTTGTCCCACATCTCATATTGAAGAATCCCTTTGCTGACAGGA 48337 Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 |||||| || || ||||||| || || || ||||| || || ||||| || || | Sbjct 48336 CATCCTGGGTACGTCTCGTATGTACCCTCCTTCTCGGCCAGCTCGCAACTTGCTTCCAGA 48277 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 || || ||||| | || || || || | | ||| ||| || |||| || ||| Sbjct 48276 GCACCGTAATACAATGTCTCAAATATTTGTTGATTCAGAAGCTGGGCTTTTTCACTCTCA 48217 Query 71494 AATGGATAAT----TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGAT 71549 || || ||| |||||| || | || ||||| | ||||| | ||||||||||| Sbjct 48216 AAAGGC-AATCTCATTAAGACAAAA---GCATCTGCCAGGCCTTGTATTCCAATACCGAT 48161 Query 71550 AGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 71609 || | ||| | | | || || || ||||||||| | ||| ||| | |||| || || Sbjct 48160 GGGGCGGTGACGCATGTTCGATGTTCTAGCTTCTGGTACAGGGTAAAAGTTAACGTCGAT 48101 Query 71610 AATTTTATTGAGATTTCTGACTATTACT-TTGACCACATCCTTTAGTTTGAGAAAATCAA 71668 |||||| || | |||| | | | | | ||| || ||| || || ||| || | Sbjct 48100 AATTTTGTTCAAATTTTT-AGTGACAGTCTTGGTTACGATCTTCAGCTTTTCAAAGTCGA 48042 Query 71669 ATCTCCCATCTAT-TACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACC 71727 || | || ||| |||||||| || | || | ||| |||| ||| || || ||||| Sbjct 48041 ATACCTTAT-TATCTACAAACATATTGACAGCGATAGAGGCCAAATTGCAGACAGCTACT 47983 Query 71728 TCATTAGCATCGGCA---TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTT 71784 |||| | | || | |||| | ||||| ||||| || ||||| ||||| || ||| Sbjct 47982 TCAT---CTTTGGAAGTGTATTCAACTATTTCTGTGCAGAGGTTACTGCACTTAATAGTT 47926 Query 71785 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTA 71844 || | ||||||||| || |||||| ||| ||||| ||||| || || || | || || Sbjct 47925 CCCAGATTTTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGTACAGCATGTAGGGGGTT 47866 Query 71845 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATATT 71903 || ||||| | |||||||| || || || |||| | | || | ||||| || | || Sbjct 47865 CCCGTTTCTACTTGAGATTCGATGATGGCCATCCACAA-AGTCTGCGCCTTGATCTTCTT 47807 Query 71904 CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGC 71963 ||| | | ||| |||||| |||| || | || || || |||||||| || Sbjct 47806 CTTAGAACGACCTTCGGCTTCGTAGCGTGTGTACAGAGCCTCAAATTCTTCTCCCCA-GC 47748 Query 71964 ATT-GTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTC-TCCATCATCATTT 72021 | | || ||| || ||| || | || ||||| | ||| || || | || | Sbjct 47747 ACTCGTGTAAGCCGGGAGCATCGTGGGGGCACATGAGACTCCAATCCTCGTTGCTC-TCG 47689 Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 72080 || || ||||| || ||||| || ||||| | ||| || |||| || | | | | Sbjct 47688 ACACGCTTCATGAACAGATCGGGGATCCACA-AGCCGTAGAATAAGTCACGTGCACGAAC 47630 Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 ||||| ||||| ||||||||||| | || | ||| | | || || | |||||||| Sbjct 47629 TTCCTCCTTTCCAGTATTCTTTTTCAAGTCTAAGAATTCAAATATGTCCGCGTGCCACGG 47570 Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 72200 || | ||| || || | | |||| |||| |||||||||||||| |||| || | || Sbjct 47569 CTCAACGTAAATAGCGAAAGCTCCGGGCCTCTTGTTTCCTCCCTGGTCTACATAGCGGGC 47510 Query 72201 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 72260 |||||||| || || | || ||| || | | |||||||| | || || || || | Sbjct 47509 CGTGTTATTGTACACACGCAGCATGGGGACCAACCCATTGGAGACTCCGTTAGTACCCGC 47450 Query 72261 GATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATT 72318 ||| ||| || |||| || || | || || ||| || || || || || || Sbjct 47449 GATGTAGGAACCCTTGGCTCGGATGCAGTG-TACATGA-AGGCCGATACCTCCAGCAGAC 47392 Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378 || || | | || || | || | || || ||||| || || ||||||||||| || Sbjct 47391 TTGGAAACCAGGGCACACTGCTTCAGGGTGTCGTAGATCCCTTCAATACTATCATCGCTC 47332 Query 72379 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438 ||| ||||| || || ||||| || |||| || | || |||| ||| Sbjct 47331 ATGGCCAGTAGGAAGCAAGAAGACAGCTGAGGACGGGGCGTGGCTGCGGAGAATAGAGTA 47272 Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498 || ||||| || || |||| || ||||| || ||||| || ||||| ||||| || Sbjct 47271 GGGCTGGCGTGAGTGAAGTATTTCTCTGACAGAAGGTTGTAAGTTTCAATGGCTGAATCA 47212 Query 72499 ATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACG 72558 || || || || || || | || | ||| | ||| || || |||||||| || Sbjct 47211 ATGTCTTCCCCGTGGATACCGACAGATACCCTCATGAGCATGTGTTGCGGTCTTTCTACA 47152 Query 72559 ATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 72618 | || | || |||| || || || ||||| |||||||| ||||| ||||| Sbjct 47151 ACTTTCCCTTCGATCTTCAGCAGATATGAGCGCTCCAAGGTTTTAAATCCAAAGTAGTTA 47092 Query 72619 TA--TGAAA 72625 || ||||| Sbjct 47091 TAATTGAAA 47083 >seq6691 Length=42033 Score = 125 bits (138), Expect = 1e-23 Identities = 245/360 (68%), Gaps = 3/360 (1%) Strand=Plus/Plus Query 41926 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 41985 ||||| || || ||||| || | ||| | || || || || | || ||||| ||||| Sbjct 14071 CATCAGGTCGCAGTTCATGCCCAGTAGTCTGACGGGCAGGGCGTCGGTGAGAAACTCTTG 14130 Query 41986 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAA 42045 |||||| ||| || || | | |||| | ||| | | || ||| | | Sbjct 14131 TTCAATGATGACAGCATCCTTGACGATAGCTAGGACTCGTGCGGGGCTGGGTTTCTGTAC 14190 Query 42046 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAA 42105 ||| ||||| ||||| | || || || |||||||| |||||||| |||| || || Sbjct 14191 TAAGTGTTTGAACATGAGGCAGGCAAAGTCGCAGTGGAGACCCTCGTCTCGGGAGATCAA 14250 Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGC 42165 |||||| || || | |||||||| ||||||||||| || |||||||| || || || Sbjct 14251 CTCGTTGCTGAAGGTCAAGCCGGGCATGAGGCCACGCTTCTTCAGCCAAAAGATGGAGGC 14310 Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 42225 ||| || || ||||||||||||||||| || ||||| | | | ||| || | Sbjct 14311 AAAACTGCCGGAGAAGAAGATTCCTTCTACGCAAGCGAAGGCCACCACACGCTCCCCGAA 14370 Query 42226 ACCGGCACTGTC-ATG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 ||| |||| || ||||||| | ||||| || |||||||| || ||||| || Sbjct 14371 GGTGGCCGTGTCGCTGCCGATCCACTGCAGGGCCCAGTCTGCCTTCTTCTTCACACACGG 14430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670561735053840