Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq8056 127 2e-24 seq48539 114 1e-20 seq6691 100 3e-16 seq15643 84.2 2e-11 >seq8056 Length=34938 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||||||||| | ||| | || ||||| | || || || || || || ||||||||| Sbjct 32130 GCCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGA 32071 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| ||||| | |||||| ||||| |||| |||||||| ||||| ||||| Sbjct 32070 AAGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGG 32011 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| |||||| |||| | ||| | ||| || | ||| || || Sbjct 32010 AATTCCTTCTTTGTCTTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAAC 31951 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||| |||||||| ||||| ||||| || ||||| Sbjct 31950 CTCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 31903 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | |||||| || | ||||| ||||||||||| || |||||||| ||| Sbjct 32357 CCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAG 32298 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| || || || ||||| | |||| | |||||||| || || Sbjct 32297 AGGGTACGTCCA-TCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGG 32239 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| || || |||||| || | | ||| | || || | |||||| || Sbjct 32238 GATGCCTTCCTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGAC 32179 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| || ||||| || ||||| || ||||| Sbjct 32178 CTCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCAT 32131 >seq48539 Length=7100 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||||||||| | ||| | || || || | || ||||| ||||| || ||||||||| Sbjct 6486 GCCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGA 6427 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | |||||| | || || ||||| | ||||| | |||||||| ||||| Sbjct 6426 GAGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGG 6367 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||||||| || | | ||| | ||| || | || || || Sbjct 6366 GATACCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCAC 6307 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||||||| ||||| ||||| ||||| || ||||| Sbjct 6306 CTCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 6259 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| |||||||||||||| || ||||| ||| Sbjct 6713 CCACCACGCAGACGGAGGACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCGGAA 6654 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || || | || || || || |||||| | |||||||| ||||| Sbjct 6653 AGGGTGCGTCCA-TCCTCCAACTGCTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGG 6595 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || ||| | | ||| | ||||| | || || || Sbjct 6594 GATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGGCTCAAC 6535 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | ||||| ||||| | || |||||||| || ||||| Sbjct 6534 TTCTAGAGTAATAGTCTTTCCGGTAAGGGTCTTTACGAAGATCTGCAT 6487 >seq6691 Length=42033 Score = 100 bits (110), Expect = 3e-16 Identities = 303/455 (67%), Gaps = 11/455 (2%) Strand=Plus/Minus Query 50413 GAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCC 50472 || ||| | ||||| || || || ||||| | || || ||||| || ||||| || Sbjct 14364 GAGCGTGTGGTGGCCTTCGCTTGCGTAGAAGGAATCTTCTTCTCCGGCAGTTTTGCCTCC 14305 Query 50473 ATATTTTACATTAA-AACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGAT 50531 || |||| | || || | | ||| | ||||||||| | || || |||||||||||||| Sbjct 14304 ATCTTTTGGCTGAAGAAGCGT-GGCCTCATGCCCGGCTTGACCTTCAGCAACGAGTTGAT 14246 Query 50532 TTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGCGC-GTAA 50590 || || ||||| || | ||| |||||||| || | | ||| || | ||| Sbjct 14245 CTCCCGAGACGAGGGTCTCCACTGCGACTTTGCCTGCCTCATGTTCAA-ACACTTAGTAC 14187 Query 50591 ATGAAAAATTATCATACGAAACAATTTTGGACATGTTCAAAGAAGCCGTCGACATCGAAA 50650 | ||| | | || | | | | | || |||| || || ||| ||| ||| Sbjct 14186 AG--AAACCCAGCCC-CGCACGAGTCCTAGCTATCGTCAAGGATGCTGTCATCATTGAAC 14130 Query 50651 AAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACATGATGT 50710 |||||||| |||| ||||| | ||||| | | ||||||||||| ||| |||||| Sbjct 14129 AAGAGTTTCTCACCGACGCCCTGCCCGTCAGACTACTGGGCATGAACTGCGACCTGATGT 14070 Query 50711 GCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGACAACCGAAATACT 50770 |||| ||||| ||||| || ||| | | ||| || | ||||| | || ||| Sbjct 14069 CGCAGTATATTGAATTTGTGGCCGACCGGCTCTTGGTGGACCTGGGCTGTGCCAAGCACT 14010 Query 50771 A-TAATGCACGTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCAAAACAAAC 50829 | || || | |||||||| || ||| | | || || |||| ||||| || ||| Sbjct 14009 ACGGATCCAAG-AACCCCTTCAGCTTCATGGACATGATCTCCCTGGAAGGCAAGACCAAC 13951 Query 50830 TTTTTCGA-AAGACGTGTAGGCGAATACAAAATGT 50863 || ||||| |||| | || || |||||| ||| || Sbjct 13950 TTCTTCGAGAAGAAG-GTTGGGGAATACCAAAAGT 13917 >seq15643 Length=27379 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | || | ||||| |||| ||| || || || || || |||||||| Sbjct 12273 CCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGAA 12214 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | || ||||| ||||| || || |||||| | |||||||| ||||| Sbjct 12213 AGGGTACGTCCA-TCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGG 12155 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| || || ||| | | ||| | ||||| | ||| ||||| Sbjct 12154 GATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTAC 12095 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || || || | || || ||||| || ||||| Sbjct 12094 CTCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 12047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506578152134880