Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq8056 127 2e-24
seq48539 114 1e-20
seq6691 100 3e-16
seq15643 84.2 2e-11
>seq8056
Length=34938
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||||||||| | ||| | || ||||| | || || || || || || |||||||||
Sbjct 32130 GCCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGA 32071
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| |||| ||||| | |||||| ||||| |||| |||||||| ||||| |||||
Sbjct 32070 AAGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGG 32011
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||||||||| |||||| |||| | ||| | ||| || | ||| || ||
Sbjct 32010 AATTCCTTCTTTGTCTTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAAC 31951
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | |||||| |||||||| ||||| ||||| || |||||
Sbjct 31950 CTCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 31903
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|||||||| | |||||| || | ||||| ||||||||||| || |||||||| |||
Sbjct 32357 CCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAG 32298
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| || | || | ||||| || || || ||||| | |||| | |||||||| || ||
Sbjct 32297 AGGGTACGTCCA-TCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGG 32239
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|||||||| || || |||||| || | | ||| | || || | |||||| ||
Sbjct 32238 GATGCCTTCCTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGAC 32179
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | |||||||| || ||||| || ||||| || |||||
Sbjct 32178 CTCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCAT 32131
>seq48539
Length=7100
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||||||||| | ||| | || || || | || ||||| ||||| || |||||||||
Sbjct 6486 GCCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGA 6427
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| || | |||||| | || || ||||| | ||||| | |||||||| |||||
Sbjct 6426 GAGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGG 6367
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||||||||| ||||||| || | | ||| | ||| || | || || ||
Sbjct 6366 GATACCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCAC 6307
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | ||| | ||||||||| ||||| ||||| ||||| || |||||
Sbjct 6306 CTCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 6259
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||| | || || |||| |||||||||||||| || ||||| |||
Sbjct 6713 CCACCACGCAGACGGAGGACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCGGAA 6654
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| |||| || | || || | || || || || |||||| | |||||||| |||||
Sbjct 6653 AGGGTGCGTCCA-TCCTCCAACTGCTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGG 6595
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||| ||||| || || ||| | | ||| | ||||| | || || ||
Sbjct 6594 GATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGGCTCAAC 6535
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||| | ||| | ||||| ||||| | || |||||||| || |||||
Sbjct 6534 TTCTAGAGTAATAGTCTTTCCGGTAAGGGTCTTTACGAAGATCTGCAT 6487
>seq6691
Length=42033
Score = 100 bits (110), Expect = 3e-16
Identities = 303/455 (67%), Gaps = 11/455 (2%)
Strand=Plus/Minus
Query 50413 GAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCC 50472
|| ||| | ||||| || || || ||||| | || || ||||| || ||||| ||
Sbjct 14364 GAGCGTGTGGTGGCCTTCGCTTGCGTAGAAGGAATCTTCTTCTCCGGCAGTTTTGCCTCC 14305
Query 50473 ATATTTTACATTAA-AACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGAT 50531
|| |||| | || || | | ||| | ||||||||| | || || ||||||||||||||
Sbjct 14304 ATCTTTTGGCTGAAGAAGCGT-GGCCTCATGCCCGGCTTGACCTTCAGCAACGAGTTGAT 14246
Query 50532 TTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGCGC-GTAA 50590
|| || ||||| || | ||| |||||||| || | | ||| || | |||
Sbjct 14245 CTCCCGAGACGAGGGTCTCCACTGCGACTTTGCCTGCCTCATGTTCAA-ACACTTAGTAC 14187
Query 50591 ATGAAAAATTATCATACGAAACAATTTTGGACATGTTCAAAGAAGCCGTCGACATCGAAA 50650
| ||| | | || | | | | | || |||| || || ||| ||| |||
Sbjct 14186 AG--AAACCCAGCCC-CGCACGAGTCCTAGCTATCGTCAAGGATGCTGTCATCATTGAAC 14130
Query 50651 AAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACATGATGT 50710
|||||||| |||| ||||| | ||||| | | ||||||||||| ||| ||||||
Sbjct 14129 AAGAGTTTCTCACCGACGCCCTGCCCGTCAGACTACTGGGCATGAACTGCGACCTGATGT 14070
Query 50711 GCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGACAACCGAAATACT 50770
|||| ||||| ||||| || ||| | | ||| || | ||||| | || |||
Sbjct 14069 CGCAGTATATTGAATTTGTGGCCGACCGGCTCTTGGTGGACCTGGGCTGTGCCAAGCACT 14010
Query 50771 A-TAATGCACGTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCAAAACAAAC 50829
| || || | |||||||| || ||| | | || || |||| ||||| || |||
Sbjct 14009 ACGGATCCAAG-AACCCCTTCAGCTTCATGGACATGATCTCCCTGGAAGGCAAGACCAAC 13951
Query 50830 TTTTTCGA-AAGACGTGTAGGCGAATACAAAATGT 50863
|| ||||| |||| | || || |||||| ||| ||
Sbjct 13950 TTCTTCGAGAAGAAG-GTTGGGGAATACCAAAAGT 13917
>seq15643
Length=27379
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|||||||| | || | ||||| |||| ||| || || || || || ||||||||
Sbjct 12273 CCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGAA 12214
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| || | || | || ||||| ||||| || || |||||| | |||||||| |||||
Sbjct 12213 AGGGTACGTCCA-TCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGG 12155
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||||||||| || || ||| | | ||| | ||||| | ||| |||||
Sbjct 12154 GATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTAC 12095
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| || | || || || || | || || ||||| || |||||
Sbjct 12094 CTCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 12047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506578152134880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |