Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq6691 206 4e-48
seq742 158 2e-33
>seq6691
Length=42033
Score = 206 bits (228), Expect = 4e-48
Identities = 317/449 (71%), Gaps = 15/449 (3%)
Strand=Plus/Minus
Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487
||||||| ||||| |||||| || |||||||| || || |||||||| |||||||||
Sbjct 14357 TGGTGGCCTTCGCTTGCGTAGAAGGAATCTTCTTCTCCGGCAGTTTTGCCTCCATCTTTT 14298
Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547
|||| |||||||| || ||||||||||| |||| ||| |||||||| || || ||||
Sbjct 14297 GGCTGAAGAAGCGTGGCCTCATGCCCGGCTTGACCTTCAGCAACGAGTTGATCTCCCGAG 14238
Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGT 125607
||||||| || ||||| ||||||||| || |||| ||| | || || | |
Sbjct 14237 ACGAGGGTCTCCACTGCGACTTTGCCTGCCTCATGTT---CAAACA-CTTAGTACAG--- 14185
Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667
| | ||||| | | ||| | || || | ||||| || | || |||||||
Sbjct 14184 --AAACCCAGCCCCGCACGAGTCCTAGCTATCGTCAAGGATGCTGTCATCATTGAACAAG 14127
Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727
||||||| ||||| |||| || ||||| | | |||||||||||| | || ||||
Sbjct 14126 AGTTTCTCACCGACGCCCTGCCCGTCAGACTACTGGGCATGAACTGCGACCTGATGTCGC 14067
Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCG---CAAGATTT 125784
|||| || || |||||||| || || || || || || ||| | |||| |
Sbjct 14066 AGTATATTGAATTTGTGGCCGACCGGCTCTTGGTGGACCTG---GGCTGTGCCAAGCACT 14010
Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844
|| ||||||| ||||| |||||| || || || || || || ||||||||||
Sbjct 14009 ACGGATCCAAGAACCCCTTCAGCTTCATGGACATGATCTCCCTGGAAGGCAAGACCAACT 13950
Query 125845 TTTTCGAGAAGAAGGTCAGCGAGTACAAA 125873
| |||||||||||||| | || ||| ||
Sbjct 13949 TCTTCGAGAAGAAGGTTGGGGAATACCAA 13921
>seq742
Length=196864
Score = 158 bits (174), Expect = 2e-33
Identities = 337/495 (68%), Gaps = 14/495 (3%)
Strand=Plus/Plus
Query 97774 ACGGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGT 97833
|||| | || ||||| |||| | ||||| ||||| || || |||| |||| | |
Sbjct 48432 ACGGAGTCAGGAACTCGCTGCTTCTCGCACCCATGCCTACCGCCTCCACCGCCCAGATTT 48491
Query 97834 TTGGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGT 97893
| || || ||||| |||||||| ||||| || ||||| ||| ||| | | ||
Sbjct 48492 TAGGAAACAACGAATCCTTTGAACCCTTCACTTCCAACATCTACACCAGAAGGGTCTTGT 48551
Query 97894 CTGGAGAGTTTCAA-TTG---ACCAACGTGCACTTGGTTCGAGACTTGGAACG--GCTCA 97947
||||||| || || ||| | || | | ||| || || ||| | || ||| |
Sbjct 48552 CTGGAGAATTCCAGGTTGTGAATCACCATCTACTGCGT----GATTTG-ACCGAGGCTGA 48606
Query 97948 ATCTGTGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACA 98007
| ||||| |||| |||||| | | ||||| |||||| || ||||||||||||
Sbjct 48607 TT-TGTGGGACGACGACATGAAAAATCTCATCATTGCCAACAACGGATCCATTCAAAACC 48665
Query 98008 TTACCATCATCCCGGAAGAGTTGCGCAGA-ATCTACAAGACTGTCTGGGAGATTCCGACC 98066
| || || || ||| | ||| |||||||||| || ||||| ||| | | |
Sbjct 48666 TGGACAGAATACC-CAAGCACATCAGAGATCTCTACAAGACAGTTTGGGAAATTTCCAAC 48724
Query 98067 AAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTC 98126
|| | |||||| | ||||| |||||| |||| | || |||||||| ||||| || |||
Sbjct 48725 AAAATACTGATCAAGATGGCAGCCGACCGAGGAGCCTTTATTGACCAAAGTCAGTCCTTC 48784
Query 98127 AATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGG 98186
|| | |||| || ||||||| |||| | | ||||| || ||||| || | |||
Sbjct 48785 AACATACACGTGGCAGAGCCCAACTACGGAAAGCTCACTTCTATCCACTTCTATGGCTGG 48844
Query 98187 AACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATA 98246
|| | |||| | ||||| || ||||| || ||||||||||| | ||| ||||| ||
Sbjct 48845 AAGATGGGCTTGAAGACTGGAATGTATTACTTGAGAACAAAGCCTGCCGTAAATGCTATC 48904
Query 98247 CCATTTACGGTGGAC 98261
| || || || |||
Sbjct 48905 CAGTTCACCGTTGAC 48919
Score = 127 bits (140), Expect = 3e-24
Identities = 345/519 (66%), Gaps = 12/519 (2%)
Strand=Plus/Plus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866
|| ||||| | ||| ||| | || || ||||| | |||||||| | | | ||
Sbjct 47456 ACTAACGGAGTCTCCAATGGGTTGGTCCCCATGCTGCGTGTGTACAATAACACGGCCCGC 47515
Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926
|| || ||||| || || || |||| || ||| | || | ||| | || || |||
Sbjct 47516 TATGTAGACCAGGGAGGAAACAAGAGGCCCGGAGCTTTCGCTATTTACGTTGAGCCGTGG 47575
Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986
||||||||| | ||||| || | || || || || |||| || || | ||
Sbjct 47576 CACGCGGACATATTTGAATTCTTAGACTTGAAAAAGAATACTGGAAAGGAGGAAGTTCGT 47635
Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AAC 97043
|| | ||||| || || | | ||| | || ||| ||||||||||||| ||| | |
Sbjct 47636 GCACGTGACTTATTCTACGGCTTGTGGATCCCCGATCTGTTCATGAAGCGTGTCGAGAGC 47695
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103
||| | | ||||| || ||||||||| || | ||||| | ||| ||||||
Sbjct 47696 AACGAGG---ATTGGAGTCTCATGTGCCCCCACGATGCTCCCGGCTTACACGAGTGCTGG 47752
Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGACG 97162
|| ||||| |||||||| |||||| |||||| || || || | | ||| |
Sbjct 47753 GGAGAAGAATTTGAGGCTCTGTACACACGCTACGAAGCCGAAGGTCGTTCTAAGAAGAAG 47812
Query 97163 AGTCGATGCACGAGA-ACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221
| || | || | ||| |||||| ||||||| | |||| ||||| || ||||| |
Sbjct 47813 A-TCAAGGCGC-AGACTTTGTGGATGGCCATCATCGAATCTCAAGTAGAAACGGGAACCC 47870
Query 97222 CGTACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACC 97280
| ||||| || |||||||| |||| || || || |||||||||| | |||| ||
Sbjct 47871 CCTACATGCTGTACAAGGA-CGCGTGCAACCGAAAGAGCAACCAACAAAATCTGGGAACT 47929
Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319
|| ||| || || || ||||| ||||| || || |||
Sbjct 47930 ATTAAGTGCAGTAACCTCTGCACAGAAATAGTTGAATAC 47968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740421574137840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |