Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6691 206 4e-48 seq742 158 2e-33 >seq6691 Length=42033 Score = 206 bits (228), Expect = 4e-48 Identities = 317/449 (71%), Gaps = 15/449 (3%) Strand=Plus/Minus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 ||||||| ||||| |||||| || |||||||| || || |||||||| ||||||||| Sbjct 14357 TGGTGGCCTTCGCTTGCGTAGAAGGAATCTTCTTCTCCGGCAGTTTTGCCTCCATCTTTT 14298 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 |||| |||||||| || ||||||||||| |||| ||| |||||||| || || |||| Sbjct 14297 GGCTGAAGAAGCGTGGCCTCATGCCCGGCTTGACCTTCAGCAACGAGTTGATCTCCCGAG 14238 Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGT 125607 ||||||| || ||||| ||||||||| || |||| ||| | || || | | Sbjct 14237 ACGAGGGTCTCCACTGCGACTTTGCCTGCCTCATGTT---CAAACA-CTTAGTACAG--- 14185 Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 | | ||||| | | ||| | || || | ||||| || | || ||||||| Sbjct 14184 --AAACCCAGCCCCGCACGAGTCCTAGCTATCGTCAAGGATGCTGTCATCATTGAACAAG 14127 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 ||||||| ||||| |||| || ||||| | | |||||||||||| | || |||| Sbjct 14126 AGTTTCTCACCGACGCCCTGCCCGTCAGACTACTGGGCATGAACTGCGACCTGATGTCGC 14067 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCG---CAAGATTT 125784 |||| || || |||||||| || || || || || || ||| | |||| | Sbjct 14066 AGTATATTGAATTTGTGGCCGACCGGCTCTTGGTGGACCTG---GGCTGTGCCAAGCACT 14010 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 || ||||||| ||||| |||||| || || || || || || |||||||||| Sbjct 14009 ACGGATCCAAGAACCCCTTCAGCTTCATGGACATGATCTCCCTGGAAGGCAAGACCAACT 13950 Query 125845 TTTTCGAGAAGAAGGTCAGCGAGTACAAA 125873 | |||||||||||||| | || ||| || Sbjct 13949 TCTTCGAGAAGAAGGTTGGGGAATACCAA 13921 >seq742 Length=196864 Score = 158 bits (174), Expect = 2e-33 Identities = 337/495 (68%), Gaps = 14/495 (3%) Strand=Plus/Plus Query 97774 ACGGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGT 97833 |||| | || ||||| |||| | ||||| ||||| || || |||| |||| | | Sbjct 48432 ACGGAGTCAGGAACTCGCTGCTTCTCGCACCCATGCCTACCGCCTCCACCGCCCAGATTT 48491 Query 97834 TTGGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGT 97893 | || || ||||| |||||||| ||||| || ||||| ||| ||| | | || Sbjct 48492 TAGGAAACAACGAATCCTTTGAACCCTTCACTTCCAACATCTACACCAGAAGGGTCTTGT 48551 Query 97894 CTGGAGAGTTTCAA-TTG---ACCAACGTGCACTTGGTTCGAGACTTGGAACG--GCTCA 97947 ||||||| || || ||| | || | | ||| || || ||| | || ||| | Sbjct 48552 CTGGAGAATTCCAGGTTGTGAATCACCATCTACTGCGT----GATTTG-ACCGAGGCTGA 48606 Query 97948 ATCTGTGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACA 98007 | ||||| |||| |||||| | | ||||| |||||| || |||||||||||| Sbjct 48607 TT-TGTGGGACGACGACATGAAAAATCTCATCATTGCCAACAACGGATCCATTCAAAACC 48665 Query 98008 TTACCATCATCCCGGAAGAGTTGCGCAGA-ATCTACAAGACTGTCTGGGAGATTCCGACC 98066 | || || || ||| | ||| |||||||||| || ||||| ||| | | | Sbjct 48666 TGGACAGAATACC-CAAGCACATCAGAGATCTCTACAAGACAGTTTGGGAAATTTCCAAC 48724 Query 98067 AAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTC 98126 || | |||||| | ||||| |||||| |||| | || |||||||| ||||| || ||| Sbjct 48725 AAAATACTGATCAAGATGGCAGCCGACCGAGGAGCCTTTATTGACCAAAGTCAGTCCTTC 48784 Query 98127 AATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGG 98186 || | |||| || ||||||| |||| | | ||||| || ||||| || | ||| Sbjct 48785 AACATACACGTGGCAGAGCCCAACTACGGAAAGCTCACTTCTATCCACTTCTATGGCTGG 48844 Query 98187 AACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATA 98246 || | |||| | ||||| || ||||| || ||||||||||| | ||| ||||| || Sbjct 48845 AAGATGGGCTTGAAGACTGGAATGTATTACTTGAGAACAAAGCCTGCCGTAAATGCTATC 48904 Query 98247 CCATTTACGGTGGAC 98261 | || || || ||| Sbjct 48905 CAGTTCACCGTTGAC 48919 Score = 127 bits (140), Expect = 3e-24 Identities = 345/519 (66%), Gaps = 12/519 (2%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||| | ||| ||| | || || ||||| | |||||||| | | | || Sbjct 47456 ACTAACGGAGTCTCCAATGGGTTGGTCCCCATGCTGCGTGTGTACAATAACACGGCCCGC 47515 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 || || ||||| || || || |||| || ||| | || | ||| | || || ||| Sbjct 47516 TATGTAGACCAGGGAGGAAACAAGAGGCCCGGAGCTTTCGCTATTTACGTTGAGCCGTGG 47575 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||||||| | ||||| || | || || || || |||| || || | || Sbjct 47576 CACGCGGACATATTTGAATTCTTAGACTTGAAAAAGAATACTGGAAAGGAGGAAGTTCGT 47635 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AAC 97043 || | ||||| || || | | ||| | || ||| ||||||||||||| ||| | | Sbjct 47636 GCACGTGACTTATTCTACGGCTTGTGGATCCCCGATCTGTTCATGAAGCGTGTCGAGAGC 47695 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 ||| | | ||||| || ||||||||| || | ||||| | ||| |||||| Sbjct 47696 AACGAGG---ATTGGAGTCTCATGTGCCCCCACGATGCTCCCGGCTTACACGAGTGCTGG 47752 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGACG 97162 || ||||| |||||||| |||||| |||||| || || || | | ||| | Sbjct 47753 GGAGAAGAATTTGAGGCTCTGTACACACGCTACGAAGCCGAAGGTCGTTCTAAGAAGAAG 47812 Query 97163 AGTCGATGCACGAGA-ACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 | || | || | ||| |||||| ||||||| | |||| ||||| || ||||| | Sbjct 47813 A-TCAAGGCGC-AGACTTTGTGGATGGCCATCATCGAATCTCAAGTAGAAACGGGAACCC 47870 Query 97222 CGTACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 | ||||| || |||||||| |||| || || || |||||||||| | |||| || Sbjct 47871 CCTACATGCTGTACAAGGA-CGCGTGCAACCGAAAGAGCAACCAACAAAATCTGGGAACT 47929 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 || ||| || || || ||||| ||||| || || ||| Sbjct 47930 ATTAAGTGCAGTAACCTCTGCACAGAAATAGTTGAATAC 47968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740421574137840