Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq8056 122 6e-23 seq48539 98.7 7e-16 >seq8056 Length=34938 Score = 122 bits (134), Expect = 6e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| ||||| || || || || || ||||||||| || | | | |||||| Sbjct 32111 ACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAAAGGGTGCGACCATCTTCT 32052 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| |||||| | || | ||||||||| || ||||||||||||||||| | Sbjct 32051 AATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGAATTCCTTCTTTGTCTTGA 31992 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||||||| |||| || ||||| || || || || || || || || Sbjct 31991 ATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAACCTCCAATGTGATCGTCTTT 31932 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 || |||| |||||| || ||||| ||||| |||| Sbjct 31931 CCGGTCAAAGTTTTCACGAAAATCTGCATGATTGA 31897 >seq48539 Length=7100 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || ||||| || ||||||||| || ||| ||||||| Sbjct 6467 ACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAGAGGGTTCGGCCGTCTTCC 6408 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || ||||||||| | |||| | || || || || || ||||||||||| | Sbjct 6407 AACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGGATACCTTCTTTGTCTTGA 6348 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || |||| || |||||| | || || || || || || || || Sbjct 6347 ATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACCTCCAAAGTTATCGTCTTG 6288 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || |||| ||||| || ||||| ||||| || Sbjct 6287 CCAGTCAAGGTTTTCACGAAAATCTGCATGTT 6256 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || ||||| |||||||| || || | | | ||||| Sbjct 6923 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTACGTCCATCTTCC 6864 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || || || | ||||| | || || || ||||||||||| ||||| | Sbjct 6863 AATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGA 6804 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| |||| |||||||| ||| || || ||||| |||||||| Sbjct 6803 ATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAACTTCCAAGGTGATGGTTTTG 6744 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || |||||||| ||||| Sbjct 6743 CCAGTAAGGGTCTTGACAAAAATCTGCAT 6715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361875362662794