Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq223 279 4e-70 seq48539 91.5 1e-13 >seq223 Length=511576 Score = 279 bits (308), Expect = 4e-70 Identities = 371/513 (72%), Gaps = 2/513 (0%) Strand=Plus/Plus Query 100785 TGCCAAGAGTCGGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCCGT 100844 |||| || | |||||| | || ||||||||||| ||||||||||| ||||| |||| Sbjct 113472 TGCCCAGCGCCGGGTTTTCACCGCCACCGCCCGGAAATTCCCAGTCAATATCCACACCGT 113531 Query 100845 CAAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGCGCCGTTTTT 100904 |||| |||||||| |||| ||||| || |||||| | || || ||| ||| || Sbjct 113532 CAAAGAACTTCCAGGTTTGCAGGAATTCTTTTACCGAGGCTACGAAGACGTCCCGCTTCG 113591 Query 100905 CCGCATCGTGCATGAAATAGAACGGGTCGGACAACGTCCAGCCGCCGATGGACGGCAGAA 100964 || ||| | |||||||||||||||||| |||||||||||||| |||||||| || | || Sbjct 113592 CCTTATCCTTCATGAAATAGAACGGGTCTGACAACGTCCAGCCACCGATGGAAGGGACAA 113651 Query 100965 TTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTGTACG 101024 |||| |||| |||| ||| || |||||| |||||||| ||||| || || || | Sbjct 113652 TTTTCAGGTTTGGATAGGCTTTTTTCAGCGCCATCAGCTGACCAAAATTACCTTTATAAG 113711 Query 101025 GCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGAA 101084 | | || | ||||| | || || | || | || |||||||||||||| | Sbjct 113712 GTGCTGAATATTCACTGACGCCTTGCTGAGGCATCTGCACCGCAGCCCAGGGATCGTGTA 113771 Query 101085 TGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCGG 101144 | || ||||| ||||| ||| ||| |||| ||| |||| || | ||||||||| Sbjct 113772 TCGCAACTTTAAAATCCTGACGCCCCGCACAGGCGCGTTGCAAGGCCTGAAAACTGCCCT 113831 Query 101145 GAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTACA 101204 |||| |||| | |||||| | ||||| ||||||||||| || |||| ||||||| Sbjct 113832 CAATGCTTTTTAAACTGTCGTTAATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGTACA 113891 Query 101205 ACAGATGCGAGAGATTGGGCAGCGGCACTTTGTCTACCGGAAAAT-TGCGGCCGTACACG 101263 | | ||| | || || || || | ||| || | |||| ||| ||| || |||||| Sbjct 113892 AGATATGTGTCAGGTTCTGCGCAGGGATTTTATCCA-CGGAGAATCCGCGACCATACACG 113950 Query 101264 CCCCACTCTACAAAATACGCAGCGACGGTCTTG 101296 |||||||| |||||||| || | ||| |||| Sbjct 113951 CCCCACTCAACAAAATATGCGCCAACGACCTTG 113983 >seq48539 Length=7100 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 |||||||| | | | ||||| ||| | || || |||||||| ||||||||||| | Sbjct 6485 CCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAG 6426 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| |||| ||| || || || |||| || ||||||||||| || Sbjct 6425 AGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGG 6366 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || |||||||| |||||| || || | | | |||||| ||||||| Sbjct 6365 ATACCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACC 6306 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | || || || || || || || ||||| || ||||| ||||| || Sbjct 6305 TCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATGTT 6256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414225008918596