Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq8056 109 3e-19 seq48539 82.4 5e-11 >seq8056 Length=34938 Score = 109 bits (120), Expect = 3e-19 Identities = 155/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||||||||| | |||||||| || || ||||||||||| || | || | || || Sbjct 32112 CACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAAAGGGTGCGACCATCTTC 32053 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||||| |||||| || || | |||||| || |||| || || |||||||| || Sbjct 32052 TAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGAATTCCTTCTTTGTCTTG 31993 Query 33280 AA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 || ||||| ||||| ||| ||||| || ||| | ||| |||| || ||||| Sbjct 31992 AATTTTCGCC---TTTACATTTTCGATCGTATCTGAGGGCTCAACCTCCAATGTGATCGT 31936 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 ||||| || | |||||| |||||||| |||||| || Sbjct 31935 CTTTCCGGTCAAAGTTTTCACGAAAATCTGCATGATT 31899 >seq48539 Length=7100 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || ||||| ||||| || ||||| || || | | || || ||| Sbjct 6923 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTACGTCCATCTTCC 6864 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||||||||| ||| || || | ||||| || | ||| || ||||| || || | Sbjct 6863 AATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGA 6804 Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 ||| ||| || || ||| ||| || || ||||| ||| |||| || || ||| Sbjct 6803 ATCTTAGCC---TTAACATTTTCAATGGTATCTGAGGGTTCAACTTCCAAGGTGATGGTT 6747 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || || || ||||| ||||| Sbjct 6746 TTGCCAGTAAGGGTCTTGACAAAAATCTGCAT 6715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318510172888932