Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_005069.1 Length=46339 Score E Sequences producing significant alignments: (Bits) Value seq19589 132 1e-26 seq725 129 2e-25 seq35 96.9 1e-15 >seq19589 Length=24186 Score = 132 bits (146), Expect = 1e-26 Identities = 177/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 43241 CTGACAGAGCCGCAAAAGGTCGGGATCGCTTCATTCTGCCCTTGGAACATTGGCCCGAGT 43300 ||||| ||||||||| | ||| ||||| ||||| ||||| | |||||||| ||| Sbjct 19410 CTGACTCAGCCGCAAATTGCCGGTATCGCATCATTTTGCCCCTACAACATTGGACCGGCG 19469 Query 43301 AAATGTTTCACTTCTACGTTCTATCGAAAATTAAATTTAGGCGACCGCTTAGGCGCGTGC 43360 ||||| |||||||| |||||||| |||| ||||| || || || || || Sbjct 19470 AAATGCTTCACTTCAACGTTCTACAAAAAACTAAATGCCGGAGATAAACGTGGTGCCTGT 19529 Query 43361 GCTGAAATTAAACGCTGGATACATGACGGCGGGAAAGATTGCCGTATTCGCTCCAATAAC 43420 |||||||| || || ||| ||| || | |||||||| ||| | || ||||| Sbjct 19530 GCTGAAATAAAGCGGTGGGTACGCGATGATGGGAAAGACTGCAATGCCCGGGAAAATAAT 19589 Query 43421 TGTTACGGGCAGATAGAGCGCCGTGAACAAGAAAGCGAATTAACGTGTTGGGGGCTGGAT 43480 || | |||||| | |||||||| || ||||||||| |||| || ||||| |||||| Sbjct 19590 TGCTTTGGGCAGGTGATACGCCGTGATCAGGAAAGCGAACTAACATGCTGGGGTCTGGAT 19649 Query 43481 GAATAA 43486 |||||| Sbjct 19650 GAATAA 19655 Score = 86.0 bits (94), Expect = 2e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42014 CGGCGTCCGTTCAATGTCTCTAAGTCA-GTTCCACATACGAACGTATGGACCTATCCGCC 42072 ||||| || |||| ||| | | ||| || ||| ||| |||| |||| ||| | | Sbjct 18335 CGGCGGCCTTTCACTGTGACGA-GTCTTGTACCATTTACTGACGTGTGGATGTATAAGTC 18393 Query 42073 AGTTCAGCATTACCCAGGAAAGCATCCATGCGAGAAACCTCTCCCTATGATGCTAGATAT 42132 ||||| | |||| || || || ||||| ||||| || || |||||| ||| || Sbjct 18394 AGTTCCGTATTATCCCGGTAAACATCCGTGCGAAAAGCCGGCGGAGATGATGAGAGACAT 18453 Query 42133 TATTGCCGCGAGCACTCGCCCCGGTGATTTAGTAGCAGATTTTTTCATGGGTTCAGGTGC 42192 || ||| |||| || || |||||| |||| || |||||||||||||| |||||| | Sbjct 18454 CATCAACGCCAGCAGCCGACCGGGTGATGTAGTTGCTGATTTTTTCATGGGATCAGGTTC 18513 Query 42193 GACAATTAAAG 42203 || || |||| Sbjct 18514 CACGATAAAAG 18524 >seq725 Length=236385 Score = 129 bits (142), Expect = 2e-25 Identities = 304/455 (67%), Gaps = 8/455 (2%) Strand=Plus/Plus Query 43036 TCAATTTCAGAAAGAAAAAGAAGGCACAAGCCTGATTGCTTATCCTGACAACGGCGGTGT 43095 |||||| | | | || |||||||| | ||||||| ||| |||| || ||| | Sbjct 193036 TCAATTGCTGGATGAGAAAGAAGGTAACAGCCTGACTGCCTATCAAGATGGTACCGGCCT 193095 Query 43096 CTGGACTATTTGCGGTGGTGTTACGCGCGTGGACGGAAAACCAGTCGTTAAGGGCATGAA 43155 ||||| |||||| |||| | | || || ||||| || || ||| ||| || |||| Sbjct 193096 TTGGACGATTTGCCGTGGCGCAATCCGTGTCGACGGTAAGCCGGTCTATAAAGGTATGAG 193155 Query 43156 GCTCACTCAAACACAATGCAACTCCATCGACAAGGCAG-AGCAAGCCAAAGCGCTGTTAT 43214 ||| || | | ||| | | || ||| | || | ||| ||| | | Sbjct 193156 GCTGACCGCTGCGAAGTGCG-CGCAGGTGAATCGGCTGGAGTCAAACAAGGCGATTGCCT 193214 Query 43215 GGGTGCAGAAGAATGTCTACGTTCCTCTGACAGAGCCGCAAAAGGTCGGGATCGCTTCAT 43274 ||||| || | || ||| ||||||| || || |||| || | | || ||||| || | Sbjct 193215 GGGTGAAGGAAAACGTCAACGTTCCACTTACGCAGCCTCAGATTGCTGGCATCGCCTCGT 193274 Query 43275 TCTGCCCTTGGAACATTGGCCCGAGTAAATGTTTCACTTCTACGTTCTATCGAAAATTAA 43334 ||||||| | ||||| ||||| |||||||| | || || ||||| ||||| | | Sbjct 193275 TCTGCCCCTACAACATCGGCCCCTCGAAATGTTTTTCATCCACTTTCTACCGAAAGCTCA 193334 Query 43335 ATTTAGGCGAC---CGCTTAGGCGCGTGCGCTGAAATTAAACGCTGGATACATGACGGCG 43391 | ||||| ||| ||||||||| || || || |||||| | | |||||| | Sbjct 193335 ACGCTGGCGATAAGCGC---GGCGCGTGCAGCGAGATAAAGCGCTGGGTGCGTGACGGTG 193391 Query 43392 GGAAAGATTGCCGTATTCGCTCCAATAACTGTTACGGGCAGATAGAGCGCCGTGAACAAG 43451 | ||||| ||| | | || | ||||| || |||||| | ||||| || || | Sbjct 193392 GTAAAGACTGCAATGTCCGGGCAAATAATTGCCTTGGGCAGGTGATACGCCGCGATCAGG 193451 Query 43452 AAAGCGAATTAACGTGTTGGGGGCTGGATGAATAA 43486 ||||||| | ||||| |||||||||||||||||| Sbjct 193452 AAAGCGAGCTGACGTGCTGGGGGCTGGATGAATAA 193486 >seq35 Length=455554 Score = 96.9 bits (106), Expect = 1e-15 Identities = 83/102 (81%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 23732 CAGGCGGAGCAGCTTTCGAGCTGGCCGGTATCCGTTGGGGCCGGTATTCCTACCTCCGTT 23791 ||||||| ||||| |||| |||||||||||| | ||| ||||||||||| ||| |||| Sbjct 34529 CAGGCGGGGCAGCCTTCGGGCTGGCCGGTATTCATTGAGGCCGGTATTCTCACCCCCGTC 34470 Query 23792 TGGGCTGCCACCCCATAGAGTGTAGGAACTCTGGTGGTAGCA 23833 |||||| |||||| |||| || |||||| ||||||||| Sbjct 34469 TGGGCTACCACCC--AAGAGCGTGAGAACTCAAGTGGTAGCA 34430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148042090844708