Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq785 149 1e-30 >seq785 Length=396209 Score = 149 bits (164), Expect = 1e-30 Identities = 555/857 (65%), Gaps = 26/857 (3%) Strand=Plus/Minus Query 7631 AAAGAAAATGCCAATAAAGACTCGAAAGTGATCCCTACAATGCGTGACTTGGTAGCTGGT 7690 || || |||||||| |||||| ||||||||||| || ||||||| || | || ||| Sbjct 143153 AACGAGAATGCCAACAAAGACAGCAAAGTGATCCCGACCCAGCGTGACCTGCTGGCGGGT 143094 Query 7691 ACAGTGTCGAAACAATATGCACTGGAAGAATATCT-ACCGAAGCACAT--TGCAGACGCT 7747 | || | || || || || | || |||| | |||| | | ||| | ||| Sbjct 143093 ATTGTCGCCAAGCATTACGC-CAAACAGCATATTTTACCGCGTGATGTCGTGCTGGCGC- 143036 Query 7748 CAT-ATCGACGGCGATATTCATTTTCACGACCTTGATTATAGCCCACTATTCCCGCAATT 7806 || | || ||||| || |||| ||| ||||| |||||| ||| | |||||| || Sbjct 143035 -ATGAGCGT-GGCGAAATCCATTATCATGACCTCGATTATTCCCCGTTCTTCCCGATGTT 142978 Query 7807 CAACTGTATGCTTATCGACATCAAGGGGATGTTCGAAGGTGGGTTCAAAATGGGTAACGC 7866 ||||| ||||| |||||| | || || ||||| | || |||||||||||||| || Sbjct 142977 TAACTGCATGCTGATCGACCTTAAAGGCATGTTGAATCACGGTTTCAAAATGGGTAATGC 142918 Query 7867 TGAAATTGAAGAGCCAAATAGCATTGCGACTGCTGCGACTATCGTAACTCAGATCATTCA 7926 |||||||| |||||| ||| | || || || | || | ||||| || Sbjct 142917 GGAAATTGACACGCCAAAGTCTATTTCCACCGCAACGGCCGTCACCGCGCAGATTATCGC 142858 Query 7927 GCAAGTAAGCAGCCACATCTATGGCGGCAACACAATCAATCGCATCGACGAAGTGCTTGC 7986 ||| || |||||| || || ||||||| || || || |||||||||||||| || || Sbjct 142857 GCAGGTCGCCAGCCATATTTACGGCGGCACGACCATTAACCGCATCGACGAAGTACTGGC 142798 Query 7987 TCCTTATGT--TCGCAAGTCGTACTACAAATGGTTAGAAATCGGTCGAGAAGAACATCCA 8044 || | || ||| || | || | || || ||| | | | |||| | Sbjct 142797 GCCGTTCGTCACCGCCAGCTTCAATAAACATCGTCAGA---CTGCC--GAAG-------A 142750 Query 8045 GATTCAGATT-CAAAAGCCGCGATCTTTGCTCGTAAACGTGTTGAGAAAGAAACGTATGA 8103 | |||||| || | || | |||||||| | ||| || ||||| ||||| Sbjct 142749 GTGGCAGATTGCAGATGCGGATGGCTTTGCTCACAGCCGTACCGAAAAAGAGTGTTATGA 142690 Query 8104 TGCGTTTCAGACTTTTGAATACCAAGTCAATACAATGCAGACTTCAAATGGTCAGACACC 8163 || || ||| | | ||||| | || ||||| |||| || | || || ||||| || Sbjct 142689 CGCCTTCCAGTCGCTGGAATATGAGGTTAATACGCTGCACACCGCCAACGGCCAGACGCC 142630 Query 8164 ATTCACGACAATCAACTTCGGTTTAGGTACTTCGTGGGAAGAGAAACTGATTCAGAAAAG 8223 || || || || || | || || || |||||| | ||||| ||| || Sbjct 142629 GTTTGTCACCTTCGGTTTTGGCCTCGGCACATCCTGGGAATCGCGCCTGATCCAGCAATC 142570 Query 8224 CATTCTGCAAAATCGTATTGCTGGTCTAGGCAAGACTAAGAAAACTGCTATCTTCCCGAA 8283 ||||||| || || ||||| || || ||||| | | ||||| ||| | ||||| || Sbjct 142569 AATTCTGCGTAACCGCATTGCCGGACTGGGCAAAAATCGCAAAACCGCTGTATTCCCAAA 142510 Query 8284 ACTTGTTTTCACGTTGAAAGACGGTGTTAACTTGAAAGAAGGTGATCCTTGTTACGGAAT 8343 ||| || || | | ||||| | || |||| ||||| | |||| || Sbjct 142509 ACTGGTGTTTGCCATCCGTGACGGCCTGAATCATAAAGCCGGTGACGCCAACTACGACAT 142450 Query 8344 CAAGAAGCTTGCTCTTGAGTGTGCAAGTAAACGCATGTACCCAGACATTTTGAACTATGA 8403 |||| | || || || || || || || || || |||||||| ||||| | || ||||| Sbjct 142449 CAAGCAACTGGCACTGGAATGCGCCAGCAAGCGTATGTACCCGGACATCCTCAATTATGA 142390 Query 8404 AAAGCTAGTTGAAACAACTGGCGGATTCAAGTCGCCTATGGGATGTCGTTCATTCTTGG- 8462 || | || || || || ||||| |||| ||||| || || ||| ||| Sbjct 142389 TCAGGTGGTGAAAGTCACAGGTTCGTTCAAAACGCCGATGGGCTGCCGCAGTTTCCTGGG 142330 Query 8463 -GTGAATGGA-AAAATG 8477 ||| ||| | |||||| Sbjct 142329 CGTGTATGAAGAAAATG 142313 Score = 138 bits (152), Expect = 2e-27 Identities = 235/337 (70%), Gaps = 4/337 (1%) Strand=Plus/Minus Query 8894 TGGAAAGAACTGACTGGCTACGGATTCAGTCTATACAGCACGCCAAGCGAATCGCTATGT 8953 |||||||| || |||||||| ||||| || ||||||||||| |||||| || || Sbjct 141905 TGGAAAGACGAAACGGGCTACGGTTTCAGCCTGTACAGCACGCCGAGCGAAAACCTGTGC 141846 Query 8954 GATCGTTTCTGTCGTCTCGATCAAGAGAAATACGGTATCATTACGGGTATCAACGACAAA 9013 || || ||||||||||| ||| ||| ||| ||| | | | ||| | | || ||| Sbjct 141845 GACCGCTTCTGTCGTCTGGATAAAGCCGAATTCGGGCTGGTGGCCGGTGTGACTGATAAA 141786 Query 9014 GACTATTACACGAACTCGTTTCACTTAGATGTGTTCAAGAAAGTGAATCCGTTCGAGAAG 9073 | || ||||| ||| || || | || || ||||| || ||||||| ||| || Sbjct 141785 GGTTACTACACCAACAGCTTCCATCTGGACGTCGAGAAGAAGGTAAATCCGTACGAAAAA 141726 Query 9074 ATTGATTTCGAA--GCAGCATACCCAATTCATGCGAATGGTGGTTTCATCTGCTATGCTG 9131 | || |||||| || | || | | | ||| || || || |||||||||||||||| | Sbjct 141725 CTCGACTTCGAAGCGCCGTATCCGCCACTCA-GC-AACGGCGGTTTCATCTGCTATGGCG 141668 Query 9132 AATTCCCGAACATGCGAGACAACATCAAAGGTCTAGAGCGCGTATGGGATTACGCATATA 9191 ||| ||| ||| ||| | |||| | |||| || || ||| ||||||||| |||| Sbjct 141667 AATACCCTAACCTGCAACACAATCTGAAAGCGCTGGAAGACGTGTGGGATTACAGTTATA 141608 Query 9192 AGAAAGTTGCGTACTTCGGCACAAACACGCCGATTGA 9228 || |||| | |||||| |||||||| || || Sbjct 141607 CCCGCGTGCCGTATTACGGCACCAACACGCCAATCGA 141571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 782666793992160