Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq35 122 1e-22 seq828 98.7 1e-15 >seq35 Length=455554 Score = 122 bits (134), Expect = 1e-22 Identities = 212/301 (70%), Gaps = 12/301 (4%) Strand=Plus/Minus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||| || || || ||||| | | | | ||| | |||| | || ||||| | | Sbjct 345336 CCGTGCGTCAGGTGACCGCCATGGCCGAGGTTCATCCCCAGAATGGTGTCGCCCGGTTGC 345277 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || ||||| |||||| || ||| || ||||| ||||| || || |||||||| ||| Sbjct 345276 AGCAGTGCGGTGTAAACCGCGAAGTTCGCCTGTGAGCCGGAGTGTGGCTGAACGTTAGCG 345217 Query 7058 AAAT-TGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAG--GTTCT-CGATTTCATC 7113 |||| |||| | || || |||||| ||||| || || ||||| |||| |||| || | Sbjct 345216 AAATCTGCACCGAA-CAATTCTTTTGCACGGTCGATAGCCAGTTGTTCAACGATGTCGAC 345158 Query 7114 GGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGT 7173 | | | || || || || || ||||||||||| || || || ||||| |||||||| Sbjct 345157 GTACT---CACAACCACCGTAGTAACGTTTGCCCGGGTAGCCTTCGGCATATTTGTTGGT 345101 Query 7174 AAAAATAGAACCCTGTGCTTTCATAACA--TCGTCTGACACATAGTTTTCGGACGCAATC 7231 | |||||||| || | ||||||| | ||| ||||||||| ||||||||| Sbjct 345100 CAGCTGCGAACCCTGAGCCTGCATAACACGCGGGCTG--GTATAGTTTTCTGACGCAATC 345043 Query 7232 A 7232 | Sbjct 345042 A 345042 >seq828 Length=218660 Score = 98.7 bits (108), Expect = 1e-15 Identities = 136/189 (72%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 65939 TTAAAGGGATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGC 65998 ||| ||| || |||||||| || || || ||||| || || || |||| ||| | || Sbjct 42131 TTACAGGCTTTCAGTGAAAGTACGGGTAATCACGTCACGCTGCTGTTCAGCAGTCAGTGA 42190 Query 65999 ATTAAAGCGTACGGCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGAT- 66057 || || ||||| ||||| || || ||||| || || || || || ||||| || |||| Sbjct 42191 GTTGAAACGTACCGCATAGCCAGACACACGAATAGTCAGCTGTGGGTATTTCTCAGGATG 42250 Query 66058 --TAACGATTGCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACC 66115 |||| ||||||||||| || | || || || || ||||| || |||||||| Sbjct 42251 TTTAACC---GCATCTTCCAGTGTTTCACGACGCAGTACGTTAACGTTCAGGTGCTGACC 42307 Query 66116 ACCTTCAAC 66124 |||||| || Sbjct 42308 ACCTTCCAC 42316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554885351618640