Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq223 248 7e-61
seq48539 109 5e-19
seq8056 86.0 5e-12
>seq223
Length=511576
Score = 248 bits (274), Expect = 7e-61
Identities = 356/502 (71%), Gaps = 0/502 (0%)
Strand=Plus/Plus
Query 101472 TGTTGCCGAGTGTTGGGTTGGCGCCTTTACCACCCGGAAACTCCCAATCGATGTCTACCC 101531
|| |||| || | ||||| | || ||| |||||||| ||||| || || || || |
Sbjct 113469 TGCTGCCCAGCGCCGGGTTTTCACCGCCACCGCCCGGAAATTCCCAGTCAATATCCACAC 113528
Query 101532 CGTCAAAAAATTTCCAAACCTGCAAAAATTCTTTGACAGAATCCACAAACACACGCCGTT 101591
||||||| || ||||| |||| |||||||| || || | || || || ||| |
Sbjct 113529 CGTCAAAGAACTTCCAGGTTTGCAGGAATTCTTTTACCGAGGCTACGAAGACGTCCCGCT 113588
Query 101592 TTATCGCGTCGTGCATATAATAGAACGGGTCGGACAATGTCCAGCCGCCGATGGACGGCA 101651
| | || | ||| ||||||||||||| ||||| |||||||| |||||||| || |
Sbjct 113589 TCGCCTTATCCTTCATGAAATAGAACGGGTCTGACAACGTCCAGCCACCGATGGAAGGGA 113648
Query 101652 AAATTTTAAGGTGTGGATTGGCCAATTTGGCCGCCATTAGCTGACCAAAGTTGCCTTTGT 101711
|||||| |||| ||||| ||| ||| |||||| ||||||||||| || ||||| |
Sbjct 113649 CAATTTTCAGGTTTGGATAGGCTTTTTTCAGCGCCATCAGCTGACCAAAATTACCTTTAT 113708
Query 101712 AGGGCTCGTTCCAAGCAGATACACCTTTCTGCGGTTTTTGTATTGCGGCCCAAGGATCGT 101771
| || | | || || |||| ||| || | || | || ||||| |||||||
Sbjct 113709 AAGGTGCTGAATATTCACTGACGCCTTGCTGAGGCATCTGCACCGCAGCCCAGGGATCGT 113768
Query 101772 GGATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAACGTTGCAACGCTTCAAAACTAC 101831
| || |||||||||||||| ||| ||| || | |||||||| || | |||||| |
Sbjct 113769 GTATCGCAACTTTAAAATCCTGACGCCCCGCACAGGCGCGTTGCAAGGCCTGAAAACTGC 113828
Query 101832 CGGGTATGGTTTTGAGGGCGTCGTTAAGGCCATCGCCGCCACAAATGGGTATGAACCCGT 101891
| ||| |||| | |||||||| || || ||||| ||||| || |||| ||||
Sbjct 113829 CCTCAATGCTTTTTAAACTGTCGTTAATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGT 113888
Query 101892 ACAACAAATGTGAGAGGTTGGGCAGCGGCACTTTGTCCACCGGAAAGTTGCGACCATACA 101951
|||| | ||||| ||||| || || | ||| ||||| | || |||||||||||
Sbjct 113889 ACAAGATATGTGTCAGGTTCTGCGCAGGGATTTTATCCACGGAGAATCCGCGACCATACA 113948
Query 101952 CGCCCCATTCTACAAAATACGC 101973
||||||| || |||||||| ||
Sbjct 113949 CGCCCCACTCAACAAAATATGC 113970
>seq48539
Length=7100
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041
|||||||| | | | |||||| || || || ||||| ||||| || |||||||||
Sbjct 6485 CCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAG 6426
Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101
| ||| |||||||| || ||||| || |||| |||||||| ||||| ||
Sbjct 6425 AGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGG 6366
Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161
| ||||||||||| ||||||| ||||| | ||| | |||| ||| |||
Sbjct 6365 ATACCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACC 6306
Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211
|||| || || || ||||| ||||| ||||| || ||||| ||||| ||
Sbjct 6305 TCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATGTT 6256
Score = 84.2 bits (92), Expect = 2e-11
Identities = 147/212 (69%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTT 20057
||||| || || || || || ||||| |||||||| || | | || | | |||||
Sbjct 6923 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTC--CGAAAGGGTACGTCCATCTT 6866
Query 20058 CCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117
||||||| || || ||| | || | |||||| ||||| ||| | ||||| |||||
Sbjct 6865 CCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCTT 6806
Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177
||| || || || | ||| | ||| ||||| ||||| ||| |||||||
Sbjct 6805 GAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAACTTCCAAGGTGATGGTTT 6746
Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209
|||| || | || ||||||||||| ||||||
Sbjct 6745 TGCCAGTAAGGGTCTTGACAAAAATCTGCATT 6714
>seq8056
Length=34938
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041
|||||||| | | ||| || | ||| || ||||||||||| || |||||||| |||
Sbjct 32357 CCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAG 32298
Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101
| || |||||||| || ||||| || |||| | |||||| ||||| |||
Sbjct 32297 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGGG 32238
Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161
| |||||| || || |||||| || || | ||| || ||| |||||
Sbjct 32237 ATGCCTTCCTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGACC 32178
Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|||| ||| || || ||||| || || || ||||| || || |||||
Sbjct 32177 TCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCAT 32131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419235202266354
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |