Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq223 248 7e-61 seq48539 109 5e-19 seq8056 86.0 5e-12 >seq223 Length=511576 Score = 248 bits (274), Expect = 7e-61 Identities = 356/502 (71%), Gaps = 0/502 (0%) Strand=Plus/Plus Query 101472 TGTTGCCGAGTGTTGGGTTGGCGCCTTTACCACCCGGAAACTCCCAATCGATGTCTACCC 101531 || |||| || | ||||| | || ||| |||||||| ||||| || || || || | Sbjct 113469 TGCTGCCCAGCGCCGGGTTTTCACCGCCACCGCCCGGAAATTCCCAGTCAATATCCACAC 113528 Query 101532 CGTCAAAAAATTTCCAAACCTGCAAAAATTCTTTGACAGAATCCACAAACACACGCCGTT 101591 ||||||| || ||||| |||| |||||||| || || | || || || ||| | Sbjct 113529 CGTCAAAGAACTTCCAGGTTTGCAGGAATTCTTTTACCGAGGCTACGAAGACGTCCCGCT 113588 Query 101592 TTATCGCGTCGTGCATATAATAGAACGGGTCGGACAATGTCCAGCCGCCGATGGACGGCA 101651 | | || | ||| ||||||||||||| ||||| |||||||| |||||||| || | Sbjct 113589 TCGCCTTATCCTTCATGAAATAGAACGGGTCTGACAACGTCCAGCCACCGATGGAAGGGA 113648 Query 101652 AAATTTTAAGGTGTGGATTGGCCAATTTGGCCGCCATTAGCTGACCAAAGTTGCCTTTGT 101711 |||||| |||| ||||| ||| ||| |||||| ||||||||||| || ||||| | Sbjct 113649 CAATTTTCAGGTTTGGATAGGCTTTTTTCAGCGCCATCAGCTGACCAAAATTACCTTTAT 113708 Query 101712 AGGGCTCGTTCCAAGCAGATACACCTTTCTGCGGTTTTTGTATTGCGGCCCAAGGATCGT 101771 | || | | || || |||| ||| || | || | || ||||| ||||||| Sbjct 113709 AAGGTGCTGAATATTCACTGACGCCTTGCTGAGGCATCTGCACCGCAGCCCAGGGATCGT 113768 Query 101772 GGATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAACGTTGCAACGCTTCAAAACTAC 101831 | || |||||||||||||| ||| ||| || | |||||||| || | |||||| | Sbjct 113769 GTATCGCAACTTTAAAATCCTGACGCCCCGCACAGGCGCGTTGCAAGGCCTGAAAACTGC 113828 Query 101832 CGGGTATGGTTTTGAGGGCGTCGTTAAGGCCATCGCCGCCACAAATGGGTATGAACCCGT 101891 | ||| |||| | |||||||| || || ||||| ||||| || |||| |||| Sbjct 113829 CCTCAATGCTTTTTAAACTGTCGTTAATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGT 113888 Query 101892 ACAACAAATGTGAGAGGTTGGGCAGCGGCACTTTGTCCACCGGAAAGTTGCGACCATACA 101951 |||| | ||||| ||||| || || | ||| ||||| | || ||||||||||| Sbjct 113889 ACAAGATATGTGTCAGGTTCTGCGCAGGGATTTTATCCACGGAGAATCCGCGACCATACA 113948 Query 101952 CGCCCCATTCTACAAAATACGC 101973 ||||||| || |||||||| || Sbjct 113949 CGCCCCACTCAACAAAATATGC 113970 >seq48539 Length=7100 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 |||||||| | | | |||||| || || || ||||| ||||| || ||||||||| Sbjct 6485 CCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAG 6426 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| |||||||| || ||||| || |||| |||||||| ||||| || Sbjct 6425 AGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGG 6366 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||||||| ||||| | ||| | |||| ||| ||| Sbjct 6365 ATACCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACC 6306 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 |||| || || || ||||| ||||| ||||| || ||||| ||||| || Sbjct 6305 TCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATGTT 6256 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTT 20057 ||||| || || || || || ||||| |||||||| || | | || | | ||||| Sbjct 6923 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTC--CGAAAGGGTACGTCCATCTT 6866 Query 20058 CCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 ||||||| || || ||| | || | |||||| ||||| ||| | ||||| ||||| Sbjct 6865 CCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCTT 6806 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 ||| || || || | ||| | ||| ||||| ||||| ||| ||||||| Sbjct 6805 GAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAACTTCCAAGGTGATGGTTT 6746 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| || | || ||||||||||| |||||| Sbjct 6745 TGCCAGTAAGGGTCTTGACAAAAATCTGCATT 6714 >seq8056 Length=34938 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 |||||||| | | ||| || | ||| || ||||||||||| || |||||||| ||| Sbjct 32357 CCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAG 32298 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || |||||||| || ||||| || |||| | |||||| ||||| ||| Sbjct 32297 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGGG 32238 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||| || || |||||| || || | ||| || ||| ||||| Sbjct 32237 ATGCCTTCCTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGACC 32178 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| || || ||||| || || || ||||| || || ||||| Sbjct 32177 TCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCAT 32131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419235202266354