Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq785 340 3e-88 >seq785 Length=396209 Score = 340 bits (376), Expect = 3e-88 Identities = 1164/1790 (65%), Gaps = 72/1790 (4%) Strand=Plus/Plus Query 37018 ACTTCATCCTGCTTGCCGCGATTAAATGCGCGAGAACCAGGCGCACCGAGATAACCGCAT 37077 ||||| |||||||| ||| ||||| | || | | | || ||||||||||| || Sbjct 141400 ACTTCTTCCTGCTTACCGGCGTTAAACGGACGGGCATCCGGGCTGCCGAGATAACCACAC 141459 Query 37078 ACGCGACGAATAACGTTCATTTTGGTATCGTCATGATTACCACATTTAGGACATTCGTAC 37137 ||||| || | || || || | || ||||| || ||||| ||||| | Sbjct 141460 ACGCGGCGGGTGACTGACACGCGGGAAGGTTCGTGATTGCCGCATTTCGGACAGGTAAAT 141519 Query 37138 CCTTTGGAAGTAGCAGT-GAATTCACCGTGATAGCCACATTCAAAGCAAACATCAACAGG 37196 |||||| || ||| | |||||| ||| |||||| || || |||| |||| | || Sbjct 141520 CCTTTGCTGGT-GCATTCGAATTCGCCGGTATAGCCGCAGTCGTAGCATTCATCGATTGG 141578 Query 37197 AGTATTTGTTCCGTAATACGGTGTGTTCAGATAAGCATAATCCCAAACGTCTTCCAACGC 37256 || || || ||||||||||| | |||| |||||||| |||||||||| ||| Sbjct 141579 CGTGTTGGTGCCGTAATACGGCACGCGGGTATAACTGTAATCCCACACGTCTTCCAGCGC 141638 Query 37257 TTTCAGATTATTTTTCATATTCGGATATTCTCCGTATGAAATAAATCCACCTGAACTCAG 37316 ||||||||| | || || || || ||||| || || | || || || || || || Sbjct 141639 TTTCAGATTGTGTTGCAGGTTAGGGTATTCGCCATAGCAGATGAAACCGCCGTTGCTGAG 141698 Query 37317 AGGAATAAATTGCTTTTCAAAATCAATCTTGTCATAAGGATTGGTATTATGACGGACGTC 37376 || | | || ||| || || | || || || ||||| || | |||||| Sbjct 141699 TGGCGGATACGGCGCTTCGAAGTCGAGTTTTTCGTACGGATTTACCTTCTTCTCGACGTC 141758 Query 37377 GAGGTGGAAGCTGTTTGTGTAATAATCTTTATCGAACACTTT----ATGAGTCGGATAAA 37432 || ||||||||||| ||||| ||| ||||||| ||| | || | || | Sbjct 141759 CAGATGGAAGCTGTTGGTGTAGTAACCTTTATCAGTCACACCGGCCACCAGCCCGA---A 141815 Query 37433 GTTCGCT--ATCAATTTTAGCGAAACGATAGCACAGGCTTTCAGATGGAGTACCGTACAG 37490 | ||| ||| | | ||| || | ||||||| |||| || || | |||||| Sbjct 141816 TTCGGCTTTATCCAGACGACAGAAGCGGTCGCACAGGTTTTCGCTCGGCGTGCTGTACAG 141875 Query 37491 GCTGAAAGCCAAACCAGTTTCAGCTTTCCAAGAATCGGTAATCTCTTTCATGTGTTTAAG 37550 ||||||| | | || ||||| ||||||| ||||| | |||||| | Sbjct 141876 GCTGAAACCGTAGCCCGTTTCGTCTTTCCAGCTTTCGGTTGCCGCTTTCA---------G 141926 Query 37551 AACAGACAGA---GCGAACACTTGTTTGGTTTGATTCTCC-------ATGATGTGTTCAT 37600 | || || | || ||| ||| | | | | || | | ||| | Sbjct 141927 ACGAGCCACAATCGCCTCGGCTT-TTTCGCGTAACTGGCCGGCGTCGAACACGTGGGTCT 141985 Query 37601 CGATACCATACATCATGATTTCACTCAGTTCATGCAGGCCGATATAGCCGATACTGACAG 37660 | | || ||| | | | | | |||||||| ||| || || |||| | | Sbjct 141986 GGTTGCCGAACAGCGCGTT---AATGGTTTCATGCACGCCAATGTATCCGAGCGAAATCG 142042 Query 37661 AAGCGCGTCCATTTTCAAA--TGCTTTCATGATATCGTCATCTGGATTCAGACGTACACC 37718 | || || ||||||| || ||| | |||||||| || | ||||| || ||||| Sbjct 142043 AGGCACGGCCATTTTTGAAGATGCCGGAA--ATATCGTCGTCAGCTTTCAGGCGCACACC 142100 Query 37719 GCAGGCGCCTTCGACGTAAAGAATCGGAGCCACGCTTGCCTTAACGCCACGCAGACGATC 37778 ||| || ||||| | ||| || || || ||||||| || || | ||| |||||| | Sbjct 142101 GCACGCACCTTCCATGTACAGGATTGGCGCCACGCGGGCTTTGATGCCTTCCAGACGTGC 142160 Query 37779 AACACGTACCATTAGAGCTTGTTTAACTACTTCCATACGCTCTTCCAGAAGCTCCCAGAA 37838 || || ||| || |||| || | | || |||||| || || || ||||||| Sbjct 142161 AATGCGGGTCATCAGCGCTTTCTTCGCCAGCAGCAAACGCTCGTCGAGCAGTGCCCAGAA 142220 Query 37839 ACGCATATGATTGCCGTTTGCGTCGAGTGCGATACGCGGCAGATTCAGAGTAACAACCCC 37898 | | | || ||| || || || || ||||||||||||||||| | | || || Sbjct 142221 CGCCGCTTCGTCGCGGTTCGCTTCCAGCGCAATACGCGGCAGATTCAGGCTGATCACGCC 142280 Query 37899 TAGATTATTACGACCTTCGTGAA-CTTCATTGCCATTTTCGTCTTCCCAACGATGCAAGA 37957 | |||||| || || ||||| | | || | ||||||||| || | | ||| || || Sbjct 142281 GATATTATTGCGGCCCTCGTGGATCATC-TCGCCATTTTCTTCATAC--ACGCC-CAGGA 142336 Query 37958 AACTGCGGCATCCCATAGGGAACTTAAAGCTGCCAGTTGTTTCAACAACTTTATCATAAC 38017 |||||||||| ||||| || || || || || || || || | ||||||| Sbjct 142337 AACTGCGGCAGCCCATCGGCGTTTTGAACGAACCTGTGACTTTCACCACCTGATCATAAT 142396 Query 38018 TCAGAATATCTGGATACATACGCTTAGAAGCGCACTCCAGTGCCAGTTGCTTGATACGAT 38077 | || || || || ||||||||||| ||||| |||||||||||||||||||| | Sbjct 142397 TGAGGATGTCCGGGTACATACGCTTGCTGGCGCATTCCAGTGCCAGTTGCTTGATGTCGT 142456 Query 38078 AAAGCGGGTCAGTTGGCTTCAAG-TTGTGTCCGTCTTTCAGAGCAAACACCAGTTTCGGG 38136 | | |||| ||||| | | || | ||||| | |||||||||||||| ||| Sbjct 142457 AGTTGGCGTCACC-GGCTTTATGATTCAGGCCGTCACGGATGGCAAACACCAGTTTTGGG 142515 Query 38137 AACACCGGAGTGATACCCTCTTTGCCAAGTCCAGCCAGTCGAACTTTCAAGATCGCTTCC 38196 || || | || | | | |||||| ||||| || | || || || | || | Sbjct 142516 AATACAGCGGTTTTGCGATTTTTGCCCAGTCCGGCAATGCGGTTACGCAGAATTGATTGC 142575 Query 38197 TGAATCAGTTCAGCTTCCCAGCTTTCACCCAGACCAAAGCCGAATGT-ACAGAAGGGAGT 38255 || ||||| | ||||||| | || || ||||| ||||| || ||| || || || Sbjct 142576 TGGATCAGGCGCGATTCCCAGGATGTGCCGAGGCCAAAACCGAAGGTGACA-AACGGCGT 142634 Query 38256 TTGACCGTTCGCGGAGTGAAGAGTGTTCACCTCGTATTCGAGTCCCTGCATTGCATCATA 38315 || ||||| |||| ||| || || || ||||| ||||| || ||| | || ||||| Sbjct 142635 CTGGCCGTTGGCGGTGTGCAGCGTATTAACCTCATATTCCAGCGACTGGAAGGCGTCATA 142694 Query 38316 -CACAGCTTT---GTGAGTCTTTGCAATAGCGTATTCTTTCGCATCTGGAATTTTCCAAT 38371 ||| ||| || | || || ||| | | | |||||||| ||| | ||| | Sbjct 142695 ACACTCTTTTTCGGTACGGCTGTG----AGCAAAGCCATCCGCATCTGCAATCTGCCACT 142750 Query 38372 AACGGGCTTCGTCCAA--ATGCTTTTCATGAGTCATCT-----TAACATACGGTGCCAGC 38424 ||| ||| | ||| || | ||| | || | || |||| ||||| Sbjct 142751 CTTCGGCA--GTCTGACGATGTTTAT--TGA---AGCTGGCGGTGACGAACGGCGCCAGT 142803 Query 38425 ACTTCGTCAATACGATTAATTGTGTTGCCGCCGTAAATGTGACTTGCTACTTGCGCAATA 38484 |||||||| || || ||||| || ||||||||||||| || || || || ||||| ||| Sbjct 142804 ACTTCGTCGATGCGGTTAATGGTCGTGCCGCCGTAAATATGGCTGGCGACCTGCGCGATA 142863 Query 38485 ATCTGAGCGACTACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTTTCGATCTGTGCATTT 38544 ||||| ||| ||||| | ||||| ||||| || || || || || | ||||| Sbjct 142864 ATCTGCGCGGTGACGGCCGTTGCGGTGGAAATAGACTTTGGCGTGTCAATTTCCGCATTA 142923 Query 38545 CCCATACGGAACCCGCGATCTAACATGCCTTTGACATCTATCAACATGCAGTTAAACATT 38604 ||||| ||| ||| ||| ||||||||||| | || |||| ||||||||||||||| Sbjct 142924 CCCATTTTGAAACCGTGATTCAACATGCCTTTAAGGTCGATCAGCATGCAGTTAAACATC 142983 Query 38605 GGGAAGAATGGAGAATAGTCAAGATCATGGAAGTGCAGCCAGCCTTTTTCGTGTGCTTGC 38664 |||||||| || ||||| || || ||||| | || | ||| || || || || Sbjct 142984 GGGAAGAACGGGGAATAATCGAGGTCATGATAATGGATTTCGCCACGCTCATGCGCCAGC 143043 Query 38665 ATAACTTCAACAGG---AAGATAATGCTTTGCAAAGTGCTTACTAACAATACCAGCAACC 38721 | || ||| || || || || || || | ||||| |||||||| || | | Sbjct 143044 ACGACATCACGCGGTAAAATATGCTGTTTGGCGTAATGCTTGGCGACAATACCCGCCAGC 143103 Query 38722 AGATCGCGTTGAGTAGGGATTACTTTAGCGTCTTTGTTAGCATTCTCATT 38771 || || || || || ||||| ||||| ||||||||| |||||||| || Sbjct 143104 AGGTCACGCTGGGTCGGGATCACTTTGCTGTCTTTGTTGGCATTCTCGTT 143153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745578732968160