Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq48539 149 1e-30 seq8056 149 1e-30 seq15643 141 2e-28 seq8521 140 7e-28 seq6691 93.3 1e-13 >seq48539 Length=7100 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| || ||||| ||||| || || || | || || || | || ||||| Sbjct 6683 GTAGATTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGTCCATCCTCCAACTGCTTTCCT 6624 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | |||||| ||||| ||||| |||||||| || || || ||||| ||||| Sbjct 6623 GCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTG 6564 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || || ||| || || ||||| ||||||||||| || ||||| || Sbjct 6563 ACATTTTCAATTGTGTCAGAAGGCTCAACTTCTAGAGTAATAGTCTTTCCGGTAAGGGTC 6504 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || |||||||| Sbjct 6503 TTTACGAAGATCTGCAT 6487 >seq8056 Length=34938 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| ||||| | ||||||||||||||||| || ||||| || || || | || ||||| Sbjct 32340 TACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAGAGGGTACGTCCATCTTC 32281 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || || || ||||| ||||| | |||||| ||||| || || || ||||| ||||| || Sbjct 32280 CAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGGGATGCCTTCCTTATCTTG 32221 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| || || || || ||||| | ||||| ||||| ||||| || || || ||||| Sbjct 32220 AATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGACCTCCAGGGTGATTGTCTT 32161 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||| || || || |||||||| Sbjct 32160 GCCAGTTAATGTCTTGACGAAGATCTGCAT 32131 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || | ||| | || || || ||||| ||||| || || Sbjct 32132 ATGCCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCG 32073 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||||| |||||||||||| || || || | |||||||| ||| Sbjct 32072 GAAAGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGA 32013 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| || ||||| || || ||||||||||| | ||||| || || Sbjct 32012 GGAATTCCTTCTTTGTCTTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCA 31953 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||| || ||||| || || | ||||| || || |||||||| Sbjct 31952 ACCTCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 31903 >seq15643 Length=27379 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || |||| || | ||| |||| || | ||| || || ||||| ||||| || || || Sbjct 12273 CCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGAA 12214 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || || | || || || || |||||||| || || || | |||||| ||||| ||||| Sbjct 12213 AGGGTACGTCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGG 12154 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||||||||| || || ||||| ||||| |||||||| | || || || |||||| Sbjct 12153 ATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTACC 12094 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || || || ||||| || || || || ||||||||| || Sbjct 12093 TCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATTGTG 12043 >seq8521 Length=40141 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| ||||||||||| || || | || ||||| || || ||||| Sbjct 2215 GTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGTCCATCTTCCAGCTGCTTTCCG 2156 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | |||||| ||||| || || || ||||| |||||||| ||||| ||||| Sbjct 2155 GCGAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGGATCTTGGCTTTC 2096 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || || |||||||| || || ||||| || ||||| || Sbjct 2095 ACATTCTCAATTGTGTCAGAGGGCTCAACCTCTAGGGTGATTGTCTTGCCGGTAAGGGTC 2036 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 2035 TTCACGAAAATCTGCAT 2019 >seq6691 Length=42033 Score = 93.3 bits (102), Expect = 1e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 269153 GTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212 |||||||| || ||||| || || ||||||| | ||||||||| ||||||| | ||| Sbjct 14340 GTAGAAGGAATCTTCTTCTCCGGCAGTTTTGCCTCCATCTTTTGGCTGAAGAAGCGTGGC 14281 Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGC 269272 || ||||| || || || ||| ||||| ||||| | | ||||| ||| | |||||| Sbjct 14280 CTCATGCCCGGCTTGACCTTCAGCAACGAGTTGATCTCCCGAGACGAGGGTCTCCACTGC 14221 Query 269273 GACTTCGCTTG 269283 ||||| || || Sbjct 14220 GACTTTGCCTG 14210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150382940732472