Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq25848 504 2e-138 seq6488 217 4e-52 seq19589 104 6e-18 seq223 100 7e-17 >seq25848 Length=116905 Score = 504 bits (558), Expect = 2e-138 Identities = 879/1266 (69%), Gaps = 21/1266 (2%) Strand=Plus/Minus Query 32879 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTT-TCCGA 32937 |||||||||||||||||||||||||| | ||||||||||||||| | | || || || Sbjct 68787 TGAAGTGGTCAACAAAAACTGGCCACGGCTTTAGAGTTTTTCCAGAA-CAATCGCTCTGA 68729 Query 32938 TTCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCAAC 32997 ||| || || | ||| || |||||||||| ||| ||||| || |||||||| |||| Sbjct 68728 TTCATTGGGTGTTAAGCCGCCGTTATATTGGTGGGGTCTGAGCTGGCTGTAATAACCAAT 68669 Query 32998 GATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCAT 33057 ||| || | |||||| | | ||| ||||| || | |||| || ||| | Sbjct 68668 GATGTAATTCGTTATTGATCTATTTGCTTCGCTAAAATTAGCGTATCCACAGTTCGGTAC 68609 Query 33058 CCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCC 33117 |||||| ||||| || | || || ||||||||||||||||| ||||||||||| || Sbjct 68608 CCATTCTGATTTCAGGCTGCGAAAAAATCGTTCCATTGGGCTGTTGTCCCAGCAGTTCCC 68549 Query 33118 GCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGCCTGCT 33177 || || ||||| || || | || | || ||||||| |||| | | ||| | |||||| Sbjct 68548 ACGTCGACTCATGCTTTGCTTTATACGATAACGCCACAGTAACCGTCTGAATTCCCTGCT 68489 Query 33178 CGTATAATGACTGCCCTGATCGCTGTGGAACATCAC-CCCGCCGGGCTTACCACGGGTTT 33236 ||||| ||||| || ||||| || |||| || | ||||| || || | || || Sbjct 68488 GGTATAGTGACTTCCTTGATCAGAATGATACATAACGTCAGCCGGTTTTCCCCCTGGCTT 68429 Query 33237 CCCATGCCATTTCCAGCGCTTTCATGGTGAG-CCTGCTGTCCGGCGAGAACGACATGGCC 33295 |||| ||||| | ||||| || || ||| ||||||| || |||||||| ||| Sbjct 68428 CCCAGGCCATCGTTAATGCTTTTCCTGTCAGAGCTG-TGTCCGGAGAAAACGACATCGCC 68370 Query 33296 CAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTTA 33355 ||||| | ||| || | | || | || |||||||| || || || ||||| || || Sbjct 68369 CAGCCTATTGGCTTGCGGGAAAATAAATCCAGAACAACCGCCAGATAAGCCCACCGTTTG 68310 Query 33356 CCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAAC 33415 |||||||||||||||||||| || |||||||| |||||| || || || || || ||| Sbjct 68309 CCCGTCCAGATATAGGTCACGTCGCCGCACCAGGTCTGATTAGGTTCCGTTACTGCAAAC 68250 Query 33416 TGCCTTTCAAGGTAGTTAGGGATAGCAACATGTTCATGACCACCACGTTTATACCGGTGA 33475 || | || || | ||||||||| | ||||| || | | ||| || || || Sbjct 68249 TGGCGATCCAGATGATTAGGGATATCCACATGCTCTTTTGTCGCTTTTTTGTAGCGATGC 68190 Query 33476 GTCGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAGCAAGCCAGCGT 33535 ||| ||||| || || || | |||||||||||| | | | | || ||||||| Sbjct 68189 TCCGGTTGCTGGCAACTAACAATATTCAGCTCTTTCATTATCTTACTGGCCCGCCAGCGA 68130 Query 33536 CCCATCTGGTAGCCTCTCCGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCCGAACCG 33595 | || | | | ||| | | | |||| ||| ||||| | || || || || || Sbjct 68129 CTCAACGGAAAACCTTTTTCGCTGACCATATCGGCAATGCTCCGGGCCCCCGCAGAGCCA 68070 Query 33596 TGGCTG--ATGCCATGTAGCTCAAGTACCTGACTGCGTAATACAGCCCGTCTGCCGTCTG 33653 | ||| ||| ||| | ||| | ||| | || ||| || || | | || | Sbjct 68069 TTACTGGCATG--ATGAACTTCACGAACCAGGCTAAGTATAACGATATGTTTTGCATCAG 68012 Query 33654 GTTTTTCAGGACGGTTTTTCCAGTATCTGTAGCTGCTGCGATGAACCCCGAACACATGGC 33713 |||| | || ||| || |||||| | ||||| |||||||| | ||||||||||| || Sbjct 68011 GTTTCTGCGGTCGGCTTAGCCAGTACCGATAGCTACTGCGATGGATCCCGAACACATTGC 67952 Query 33714 AGAGTGTGACCACAGGATAATGCGCTCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGA 33773 | | | | |||||| | ||| || |||||| | | || |||||| |||||||||| Sbjct 67951 AAATAAAGGCAACAGGAAACCGCGTCCTCAGTTTCTCAACTAACGAGAATTGTTCAGGGA 67892 Query 33774 GTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCTCCATTTCAATGCGTTG 33833 |||||||||||||||||||||||||||||||||||| || || |||||||||| ||||| Sbjct 67891 GTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATATCGTTTTCCATTTCAACACGTTG 67832 Query 33834 TAG-CTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAATGGGGGAGGCTTTTG 33892 || | |||| || | ||||| || || ||| || || || || || ||| | |||| Sbjct 67831 CAGCCGTTTTTCT-AATTCACGAATGCGAAGTTGCTCAGGCGTCATCGGAGAGACCTTTG 67773 Query 33893 GTGTTTTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGC 33952 | | ||| || || || || || || |||||| | ||| ||||| | Sbjct 67772 GGGATTTACCTGCGCGTTCTTCTTTAAGCTGGCGAACCCATTTATCCATCGTGGATTTAC 67713 Query 33953 CAACATCCATAGCTTTGGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAG 34012 | |||| ||| || | || || | || || ||||| | ||| || | || || || | Sbjct 67712 CTACATTCATTGCCGTTGCAGCGGCGGCAACGGTGTAGTGCTGATCGAGTACAAGCTGGG 67653 Query 34013 CGGATTCGCGTTTAAACTCTGCGCTAAAATT---TCtttt------tttCATTGGAGCAC 34063 | | || || ||||| | ||||||||| ||| || |||| ||| Sbjct 67652 CAGCCTCAAGTCGGAACTCGGGGCTAAAATTGCGTCTGTTACGTCCGGTCATAATGTCAC 67593 Query 34064 CTGTGTTG-TTCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCA 34122 |||| ||| | |||||||| ||||||||||| |||||||||||| ||| ||| | ||| Sbjct 67592 CTGTTTTGACTATGAGGTGATGATATCACCTCTATTCAGGTGGCCAGATTTAGTATTCCA 67533 Query 34123 CTTCAA 34128 |||||| Sbjct 67532 CTTCAA 67527 Score = 412 bits (456), Expect = 9e-111 Identities = 752/1091 (69%), Gaps = 19/1091 (2%) Strand=Plus/Minus Query 33052 CGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCA 33111 ||| | |||||| ||||| || | || || ||||||||||||||||| |||||||| Sbjct 46411 CGGTACCCATTCTGATTTCAGGCTGCGAAAAAATCGTTCCATTGGGCTGTTGTCCCAGCA 46352 Query 33112 GTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTG 33171 ||| || || || ||||| || || | || | || ||||||| |||| | | ||| | Sbjct 46351 GTTCCCACGTCGACTCATGCTTTGCTTTATACGATAACGCCACAGTAACCGTCTGAATTC 46292 Query 33172 CCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCC-GCCGGGCTTACCAC 33230 |||||| ||||| ||||| || ||||| || |||| || | ||||| || || | Sbjct 46291 CCTGCTGGTATAGTGACTTCCTTGATCAGAATGATACATAACGTCAGCCGGTTTTCCCCC 46232 Query 33231 GGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGC-CTGCTGTCCGGCGAGAACGAC 33289 || |||||| ||||| | ||||| || || ||| ||||||| || |||||| Sbjct 46231 TGGCTTCCCAGGCCATCGTTAATGCTTTTCCTGTCAGAGCTG-TGTCCGGAGAAAACGAC 46173 Query 33290 ATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAG 33349 || |||||||| | ||| || | | || | || |||||||| || || || ||||| Sbjct 46172 ATCGCCCAGCCTATTGGCTTGCGGGAAAATAAATCCAGAACAACCGCCAGATAAGCCCAC 46113 Query 33350 CGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACG 33409 || || |||||||||||||||||||| || |||||||| |||||| || || || || Sbjct 46112 CGTTTGCCCGTCCAGATATAGGTCACGTCGCCGCACCAGGTCTGATTAGGTTCCGTTACT 46053 Query 33410 GCGAACTGCCTTTCAAGGTAGTTAGGGATAGCAACATGTTCATGACCACCACGTTTATAC 33469 || ||||| | || || | ||||||||| | ||||| || | | ||| || Sbjct 46052 GCAAACTGGCGATCCAGATGATTAGGGATATCCACATGCTCTTTTGTCGCTTTTTTGTAG 45993 Query 33470 CGGTGAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAGCAAGC 33529 || || ||| ||||| || || || | |||||||||||| | | | | || || Sbjct 45992 CGATGCTCCGGTTGCTGGCAACTAACAATATTCAGCTCTTTCATTATCTTACTGGCCCGC 45933 Query 33530 CAGCGTCCCATCTGGTAGCCTCTCCGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCC 33589 ||||| | || | | | ||| | | | |||| ||| ||||| | || || || Sbjct 45932 CAGCGACTCAACGGAAAACCTTTTTCGCTGACCATATCGGCAATGCTCCGGGCCCCCGCA 45873 Query 33590 GAACCGTGGCTG--ATGCCATGTAGCTCAAGTACCTGACTGCGTAATACAGCCCGTCTGC 33647 || || | ||| ||| ||| | ||| | ||| | || ||| || || | Sbjct 45872 GAGCCATTACTGGCATG--ATGAACTTCACGAACCAGGCTAAGTATAACGATATGTTTTG 45815 Query 33648 CGTCTGGTTTTTCAGGACGGTTTTTCCAGTATCTGTAGCTGCTGCGATGAACCCCGAACA 33707 | || ||||| | || ||| || |||||| | ||||| |||||||| | |||||||| Sbjct 45814 CATCAGGTTTCTGCGGTCGGCTTAGCCAGTACCGATAGCTACTGCGATGGATCCCGAACA 45755 Query 33708 CATGGCAGAGTGTGACCACAGGATAATGCGCTCTGAGTTTCCCGATTATCGAGAACTGTT 33767 ||| ||| | | | |||||| | ||| || |||||| | | || |||||| |||| Sbjct 45754 CATTGCAAATAAAGGCAACAGGAAACCGCGTCCTCAGTTTCTCAACTAACGAGAATTGTT 45695 Query 33768 CAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCTCCATTTCAAT 33827 |||||||||||||||||||||||||||||||||||||||||| || || |||||||||| Sbjct 45694 CAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATATCGTTTTCCATTTCAAC 45635 Query 33828 GCGTTGTAG-CTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAATGGGGGAGG 33886 ||||| || | |||| || | ||||| || || ||| || || || || || ||| Sbjct 45634 ACGTTGCAGCCGTTTTTCT-AATTCACGAATGCGAAGTTGCTCAGGCGTCATCGGAGAGA 45576 Query 33887 CTTTTGGTGTTTTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGG 33946 | ||||| | ||| || || || || || || |||||| | ||| |||| Sbjct 45575 CCTTTGGGGATTTACCTGCGCGTTCTTCTTTAAGCTGGCGAACCCATTTATCCATCGTGG 45516 Query 33947 AAAGGCCAACATCCATAGCTTTGGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCA 34006 | || |||| ||| || | || || | || || ||||| | ||| || | || | Sbjct 45515 ATTTACCTACATTCATTGCCGTTGCAGCGGCGGCAACGGTGTAGTGCTGATCGAGTACAA 45456 Query 34007 GTTGAGCGGATTCGCGTTTAAACTCTGCGCTAAAATT---TCtttt------tttCATTG 34057 | || || | || || ||||| | ||||||||| ||| || |||| Sbjct 45455 GCTGGGCAGCCTCAAGTCGGAACTCGGGGCTAAAATTGCGTCTGTTACGTCCGGTCATAA 45396 Query 34058 GAGCACCTGTGTTG-TTCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGT 34116 ||||||| ||| | |||||||| ||||||||||| |||||||||||| ||| ||| Sbjct 45395 TGTCACCTGTTTTGACTATGAGGTGATGATATCACCTCTATTCAGGTGGCCAGATTTAGT 45336 Query 34117 GTGCCACTTCA 34127 | |||||||| Sbjct 45335 ATTCCACTTCA 45325 Score = 87.8 bits (96), Expect = 4e-13 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 21638 ATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAGCCTTTTCGCAG 21697 |||||||||||| | ||| ||| | |||||| | || || | | ||| || ||| Sbjct 108252 ATCCTGCCATTTGCGGGTCTGCAGCTGGCCTTCGATGTAGACTTTTGCGCCCTTGGTCAG 108193 Query 21698 ATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTGCCACTCCGTCTG 21757 ||||| | ||||||||| ||||| || ||| || ||||||||||||||||| || | Sbjct 108192 GTATTCACCGGCAATTTCGGCCAGCTTTCCGAACACGACCACGCGGTGCCACTCGGTTTT 108133 Query 21758 CTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGC 21805 || ||||| || || || |||||||| | ||| ||||| || Sbjct 108132 TTCGCGCTGCTCGCCGGTGGCTTTGTCACGCCAGTTTTCGGACGTGGC 108085 >seq6488 Length=277817 Score = 217 bits (240), Expect = 4e-52 Identities = 196/248 (79%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 32948 GGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCAACGATATAGTCC 33007 ||| |||| |||||| |||||||| | || || || |||||||| ||||||||||| | Sbjct 221914 GGTGACCCGCCGTTACATTCGTGCAGCCTGAGCGCGCTGTAATACCCAACGATATAAGCT 221973 Query 33008 GTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCATCCATTCGTTC 33067 ||||| | || || || |||||||||||||| ||||| |||| |||| ||| || ||| Sbjct 221974 GTTATTTCATGGGCAGCATCGCTGAAGCTTACCTAACCAGCCACTGGCACCCACTCATTC 222033 Query 33068 TTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCCGCGCCGGCTC 33127 || ||| ||||||||||||| |||| ||||||||||||||||||||||| || || ||| Sbjct 222034 TTAAGAGTCCTGAAGAAGCGCGCCATCGGGCTGTTATCCCAGCAGTTTCCACGTCGACTC 222093 Query 33128 ATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGCCTGCTCGTATAATGA 33187 ||||||||| || | | || ||||| | | ||||||||||| ||||||||| Sbjct 222094 ATACTCTGTTTGCCCCGATACCGCCAAA---------GTAACTGCCTGCTTGTATAATGA 222144 Query 33188 CTGCCCTG 33195 | |||||| Sbjct 222145 CAGCCCTG 222152 >seq19589 Length=24186 Score = 104 bits (114), Expect = 6e-18 Identities = 222/331 (67%), Gaps = 3/331 (1%) Strand=Plus/Plus Query 31943 ACAAGGACTGCTGGCAAACGCCGCTTTGGCTTTTTGATGCACTGGATATTGAGTTTGGAT 32002 |||| ||| ||||||| |||||| | | || ||| |||||| |||||||||| | Sbjct 12366 ACAAAGACCGCTGGCAGACGCCGATGGAAGTATTCACTGCGCTGGATCTTGAGTTTGGTT 12425 Query 32003 TCTGGCTGGATTCGGCAGCGAGCGACAAAAATGCTCTGTGTGCTCACTGGCTAACTTAGG 32062 | | || || | || | | || | || || || || || | | || || | | Sbjct 12426 TTTATCTTGACGCCGCTGA---CCACCAGAACGCGCTTTGCGCCCGGTACCTGACAGAAG 12482 Query 32063 CCGACGACGCGCTCAATTCTGAGTGGGTAAGCCACGGTGCAATCTGGAATAACCCACCGT 32122 |||| || ||||| | || |||| || |||| ||||||||| |||||| || | Sbjct 12483 CCGATGATGCGCTGGCCACCGAATGGGAGAGTTACGGCGCAATCTGGTGTAACCCGCCAT 12542 Query 32123 ACAGCAATATCAGGCCGTGGGTGGAAAAAGCCGCTGAGCAGTGCATACAACAGCGACAGA 32182 ||||| |||| ||||||||| || || ||||| ||||| ||| ||| ||| Sbjct 12543 ACAGCTCGATCACGCCGTGGGTTGAGAAGGCCGCCGAGCAATGCCGCGCCCAGTACCAGC 12602 Query 32183 CGGTAGTTATGCTTGTGCCAGAGGATATATCAGTCGGATGGTTCAGCAAGGCTCTGGAGA 32242 |||| || ||||| |||| | |||| ||| || |||||| ||| ||| | Sbjct 12603 CGGTGGTAATGCTGCTGCCCGCCGATACCTCAACAGGCTGGTTCTCGCTGGCGCTGACTA 12662 Query 32243 GTGTCGACGAAGTTCGCATTATCACTGATGG 32273 | ||||||| | ||| ||||||||||||| Sbjct 12663 CAGCCGACGAAATCCGCTTTATCACTGATGG 12693 >seq223 Length=511576 Score = 100 bits (110), Expect = 7e-17 Identities = 229/345 (66%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 21566 GCCACCAAGCATTTGCATGGTTCCACCAACGCCTACGATAACTTCGGTAGTGAACCTATC 21625 ||| || ||||| |||||||| || || ||| |||| |||||||| ||| | | || Sbjct 459543 GCCGCCGAGCATCTGCATGGTGCCGCCCACGTTAACGACGACTTCGGTGGTGTATTTTTC 459602 Query 21626 CTGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGA 21685 || ||||| |||||| | || ||| | |||||| | || |||| ||| Sbjct 459603 AACGCCAGCCTGATCGGTCCATTTACGGGTTTGCAGTGCGCCTTCGATGTAGACCTGAGA 459662 Query 21686 GCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTG 21745 ||||| ||| ||||||| || | |||||| | ||| ||| || ||||| ||||| Sbjct 459663 ACCTTTCTTCAGGTATTCGCCTGCGACTTCTGCTAATTTGCCGAACAACACCACACGGTG 459722 Query 21746 CCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGC 21805 ||| ||||| | || || ||||| || || || |||||||| || ||||| || Sbjct 459723 CCATTCCGTTTTTTCTTTCTGCTCGCCGGTGGCTTTGTCACGCCAGCTCTCAGACGTTGC 459782 Query 21806 AACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCATGCCC 21865 | || | ||| |||| || || || || | || ||| || || || || Sbjct 459783 CAGAGTGATGTTGGCAACCGCGCCGCCGTTAGGCATGTAGCGGACTTCCGGGTCTTGTCC 459842 Query 21866 AAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 21910 || ||| | | || || || |||||||||||||| ||||| Sbjct 459843 CAGATTACCGACGAGAATAACTTTGTTTACGCCTCTGCTGGCCAT 459887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124713974933540