Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq223 111 1e-19
seq48539 82.4 6e-11
>seq223
Length=511576
Score = 111 bits (122), Expect = 1e-19
Identities = 276/415 (67%), Gaps = 8/415 (2%)
Strand=Plus/Minus
Query 30292 AACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGAT 30351
||||| || ||| | ||||| ||||| ||| | ||||| || || || || |||||
Sbjct 113907 AACCTGACACATATCTTGTACGGCTTCACGCCGATTTGCGGCGGGGACGGGATTAACGAC 113848
Query 30352 AGCTTAAAGCAAG--TGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTGCGCGGGTCGAG 30409
|| ||||| ||| | ||| ||| |||| || ||| | || ||||| ||
Sbjct 113847 AGTTTAAA--AAGCATTGAGGGCAGTTTTCAGGCCTTGCAACGCGCCTGTGCGGGGCGTC 113790
Query 30410 AGGATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAG 30469
||||||||||||| |||| |||||| |||| || | || | || || |||| |
Sbjct 113789 AGGATTTTAAAGTTGCGATACACGATCCCTGGGCTGCGGTGCAGATGCCTCAGCAAGGCG 113730
Query 30470 TGGGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAAAGAC 30529
| | | | | || |||||||| |||||||| || ||||||||| | |||| |
Sbjct 113729 TCAGTGAATATTCAGCACCTTATAAAGGTAATTTTGGTCAGCTGATGGCGCTGAAAAAAG 113670
Query 30530 ACAATCCCGACCTTACGATTTTACCGTCTATTGGCGGGTGGACACTTAGCGACCCTTTCT 30589
| |||| |||| | ||| | || || || || || ||||| | ||||| ||||
Sbjct 113669 CCTATCCAAACCTGAAAATTGTCCCTTCCATCGGTGGCTGGACGTTGTCAGACCCGTTCT 113610
Query 30590 TTAAATTGA--GTTCTGCCGAAAATCGCGCCGTTTTCGTTGAGTCCGCACGAGAGTATTT 30647
| ||| | | | |||| || | ||| ||||| | || | | ||| | |
Sbjct 113609 ATTTCATGAAGGATAAGGCGAAG--CGGGACGTCTTCGTAGCCTCGGTAAAAGAATTCCT 113552
Query 30648 GCGCACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGGT 30702
|| || ||||| || |||||||| | || || |||||||| ||||||||||||
Sbjct 113551 GCAAACCTGGAAGTTCTTTGACGGTGTGGATATTGACTGGGAATTTCCGGGCGGT 113497
>seq48539
Length=7100
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| || || || ||| |||||||| || |||||||| | | ||| |||| ||
Sbjct 6468 CACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAGAGGGTTCGGCCGTCTTC 6409
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|| |||||| || || |||| | | ||||||||| || | || ||| |||||
Sbjct 6408 CAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGGATACCTTCTTTGTCTTG 6349
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|||||| ||| | | || ||||||| || |||| ||| | ||||| || ||
Sbjct 6348 AATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACCTCCAAAGTTATCGTCTT 6289
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || | |||||||| |||||||||||
Sbjct 6288 GCCAGTCAAGGTTTTCACGAAAATCTGCAT 6259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420897806312834
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |