Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq223 111 1e-19 seq48539 82.4 6e-11 >seq223 Length=511576 Score = 111 bits (122), Expect = 1e-19 Identities = 276/415 (67%), Gaps = 8/415 (2%) Strand=Plus/Minus Query 30292 AACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGAT 30351 ||||| || ||| | ||||| ||||| ||| | ||||| || || || || ||||| Sbjct 113907 AACCTGACACATATCTTGTACGGCTTCACGCCGATTTGCGGCGGGGACGGGATTAACGAC 113848 Query 30352 AGCTTAAAGCAAG--TGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTGCGCGGGTCGAG 30409 || ||||| ||| | ||| ||| |||| || ||| | || ||||| || Sbjct 113847 AGTTTAAA--AAGCATTGAGGGCAGTTTTCAGGCCTTGCAACGCGCCTGTGCGGGGCGTC 113790 Query 30410 AGGATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAG 30469 ||||||||||||| |||| |||||| |||| || | || | || || |||| | Sbjct 113789 AGGATTTTAAAGTTGCGATACACGATCCCTGGGCTGCGGTGCAGATGCCTCAGCAAGGCG 113730 Query 30470 TGGGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAAAGAC 30529 | | | | | || |||||||| |||||||| || ||||||||| | |||| | Sbjct 113729 TCAGTGAATATTCAGCACCTTATAAAGGTAATTTTGGTCAGCTGATGGCGCTGAAAAAAG 113670 Query 30530 ACAATCCCGACCTTACGATTTTACCGTCTATTGGCGGGTGGACACTTAGCGACCCTTTCT 30589 | |||| |||| | ||| | || || || || || ||||| | ||||| |||| Sbjct 113669 CCTATCCAAACCTGAAAATTGTCCCTTCCATCGGTGGCTGGACGTTGTCAGACCCGTTCT 113610 Query 30590 TTAAATTGA--GTTCTGCCGAAAATCGCGCCGTTTTCGTTGAGTCCGCACGAGAGTATTT 30647 | ||| | | | |||| || | ||| ||||| | || | | ||| | | Sbjct 113609 ATTTCATGAAGGATAAGGCGAAG--CGGGACGTCTTCGTAGCCTCGGTAAAAGAATTCCT 113552 Query 30648 GCGCACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGGT 30702 || || ||||| || |||||||| | || || |||||||| |||||||||||| Sbjct 113551 GCAAACCTGGAAGTTCTTTGACGGTGTGGATATTGACTGGGAATTTCCGGGCGGT 113497 >seq48539 Length=7100 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || ||| |||||||| || |||||||| | | ||| |||| || Sbjct 6468 CACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAGAGGGTTCGGCCGTCTTC 6409 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| || || |||| | | ||||||||| || | || ||| ||||| Sbjct 6408 CAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGGATACCTTCTTTGTCTTG 6349 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 |||||| ||| | | || ||||||| || |||| ||| | ||||| || || Sbjct 6348 AATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACCTCCAAAGTTATCGTCTT 6289 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | |||||||| ||||||||||| Sbjct 6288 GCCAGTCAAGGTTTTCACGAAAATCTGCAT 6259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420897806312834