Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq6760 280 4e-71 seq725 266 9e-67 >seq6760 Length=71796 Score = 280 bits (310), Expect = 4e-71 Identities = 362/500 (72%), Gaps = 0/500 (0%) Strand=Plus/Plus Query 1513 TGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAAT 1572 |||||||| || || ||||| || || || || || || || | || || ||||| | Sbjct 16337 TGTTTGGTCTCGATATAAATCCTTCCGATGTACTCACCTAGCACGCCAATACCTATTAGC 16396 Query 1573 TGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTT 1632 || | ||||| |||||||||| |||||| | | |||||| || ||| |||| || Sbjct 16397 TGGATTCCACCGAGGAAAAGAATAGAAACCAAGATAGACGGATAACCATGAACGGGGTTG 16456 Query 1633 CCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGACATACCTGCAATA 1692 ||||| || | | ||||||||||| || ||||||| ||| |||| ||| || | | Sbjct 16457 CCAAAAATGAGGGTGTCAATAATCATATATACACCGTAGGCGAAAGACAGACCGGCCACA 16516 Query 1693 AACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTATTCCCTCC 1752 || | || || || ||||| || || || ||||| |||||||| || ||||| || || Sbjct 16517 AAAAGACCTATATACGTCCACATTCGCAGTGGAAAAGTTGAGAACGATGTTATGCCTTCG 16576 Query 1753 AGCGCCAGGTTCCATAATTTCCAGCCGTTGAATTTCGAATCACCGGCCACGCGTTCGGCA 1812 || || |||||||| | |||||| || || ||||| | |||||| |||||||| | Sbjct 16577 AGAGCAAGGTTCCACAGTTTCCAACCATTAAATTTTGTCGAACCGGCAACGCGTTCATCT 16636 Query 1813 CGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCACACCCTTCATAAAC 1872 |||| ||||| ||||| || || || || |||||| || || || ||||| || Sbjct 16637 CGGGTATATTCGACAACTTCAGTGCGACCACCGACCCAAGACAGAACCCCTTTCATGAAT 16696 Query 1873 AAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAACCGAAAG 1932 ||||| ||||| || | || ||||| || || || || || |||||||| || Sbjct 16697 AAGTTTCGTTCAGGGAGCAACTTAATGTTTTCTACGACAGCGCGAGACATTAACCTGAAA 16756 Query 1933 TCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAGCTTATAAAACCAC 1992 |||||||| ||||| || || || || |||||||| | || || ||||||||||||||| Sbjct 16757 TCGCCAACGTTTTCCTCAATCTTAGGCTTGCTGATCATGTTATGGAGCTTATAAAACCAC 16816 Query 1993 TCAGCTGTCTTACGCTTCAA 2012 ||||| | |||||||| || Sbjct 16817 TCAGCGCTTTTACGCTTAAA 16836 >seq725 Length=236385 Score = 266 bits (294), Expect = 9e-67 Identities = 511/741 (69%), Gaps = 13/741 (2%) Strand=Plus/Plus Query 3675 CATTCATCAATCAACCTTTTTGCCTCGTGAGGCTCAAGCCAGCGGATACGCTTATTTTTC 3734 |||||||||| || | || || || | || || ||||| | || ||||||||||| Sbjct 173927 CATTCATCAACCAGGCGTTGCGCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTTTT 173986 Query 3735 GGCTGAGGAACTTTGATGATCGGAGCCTTATCCAGCATCTTCCATTCGCGTTCAGCAGCC 3794 | ||| || ||||| || | || || || |||||| ||||| || ||||| || || Sbjct 173987 GCCTGTGGGACTTTTATCACTGGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGGCG 174046 Query 3795 CGGAGGAGTGCCTTAATGAATGAAAGGTGAGTTGCTTTTGTGGCTACTGCTGCCGGCTTA 3854 || || || | ||| || | | ||||| |||| || |||||| ||||| | ||| Sbjct 174047 CGCAGCAGCGACTTCATCAGGGCGAGGTGTTTTGCCTTGGTGGCTG-TGCTGAC--CTTC 174103 Query 3855 -GGCTTGAATACTGGAG-GCTGCT-TCCCATTCTTCCTGCAAGCTTCATCCATT-AACTT 3910 ||| ||||| | ||| | |||| ||||| |||| | || ||| Sbjct 174104 TGGCGCTCATACTTTGGCGCTTCGATCCCTCTCTTCGC-CAAGGACTGTGAATGCAACCG 174162 Query 3911 CCAGTTTTCCTCATGCCGCCGATTAGTCATCTTCTGGATGGCGGAGTAAATCTTCGTCTC 3970 ||||||| | ||| || ||| ||| || ||| || | ||| || || | || Sbjct 174163 ATGGTTTTCCGCTGCCCGGCGGTTAACCATTTTGCTGATCGCCGTGTAGATTTTGGCTTC 174222 Query 3971 GGTAATATCCTTCAACTGCATCCCTGCAAAATGCTGGAGCCAGAATCCTATCCGACTCTT 4030 ||||||||||||||||| || |||| |||||||| ||||||||||| ||||| || || Sbjct 174223 GGTAATATCCTTCAACTTCACCCCTTCAAAATGCATCAGCCAGAATCCCATCCGGCTTTT 174282 Query 4031 GTCATCATCCAGCGACTTCTTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCTCCTC 4090 |||||||||||| || ||||| | ||| || || |||||||| | ||||||||| || Sbjct 174283 GTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTCCAACCACCTTAAACAGGCCTCTTC 174342 Query 4091 AAAAGTCATGTCAGGCGTCTCTCCTAATTTATTTACCCTCCATGCTTCTGCCTTCAGTTT 4150 |||||| | |||||| || || | | || | ||| |||| || ||| Sbjct 174343 AAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTATTCGCCAGAGCTCTGATTTTCTTTT 174402 Query 4151 GTCATGAAGCT-CTGTGGCCTGCCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTTT 4209 ||| || |||| |||| |||| ||| |||| | |||||||||||| | |||| ||||| Sbjct 174403 GTCGTGCAGCTCCTGT-GCCTCCCTCTTGTTCGCTGTCCCAAGAGATTCTTTAAGTCTTT 174461 Query 4210 TGCCGTTCGGCAATGTGAAACTGGCGTACCAGGTTTCACCTCTGCGGAATAGTGACATTT 4269 ||| ||||| | ||| || ||||||||| | | |||||| ||||| | ||||| | Sbjct 174462 GCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTTACCTCTACGGAAGATAGACATGT 174521 Query 4270 CAGTTCCTCTGTTATGTCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGATTGAAG 4329 |||||| ||| |||||| | ||||| |||||| | | ||| | || Sbjct 174522 TTTTTCCTCGAGCATG---TCACCCTCACTCACGGCGACAGTGTTGATCGGTTTATTCAG 174578 Query 4330 TGCCGCAACGCAGGCTTGTCGTGTGGTGAGGTAAGGGGATTTAGGTTTGGAAGGGTCTTT 4389 ||| |||| || ||||| || ||| || ||||||||| || ||||| || || || || Sbjct 174579 TGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGGGACTTTGGTTTCGATGGATCCTT 174638 Query 4390 GCGTGTTGCCTGAAGGCGGCC 4410 ||| || |||| |||||| Sbjct 174639 GCGCTCGGCGTGAACGCGGCC 174659 Score = 255 bits (282), Expect = 2e-63 Identities = 551/820 (67%), Gaps = 28/820 (3%) Strand=Plus/Plus Query 16376 CGTCTGAGGAACGGAGAAGAGTCGGATACCCTGAAGACCGGAATCGAAGAGCTTGACGCT 16435 ||||| | ||||| || |||||||| || || || ||||| || ||||| |||| Sbjct 188784 CGTCTTAAAAACGGTGAGGAGTCGGACACGCTTAAAACCGGCATACCTGAGCTGGACGAA 188843 Query 16436 ATCACCGGAGGAATGAACGCAGAAGACCTTGTGATTATTGCTGCTCGTCCAGGTATGGGT 16495 || || || ||| ||||| || || || | || | |||||||| || |||||||| Sbjct 188844 ATTACAGGCGGACTGAACAACGAGGATCTGATCATCGTAGCTGCTCGCCCTGGTATGGGG 188903 Query 16496 AAAACCGAACTGGCGCTGAAGATAGCCGAAGGCGTGGCAAGTCGTGTTATTCCTGGTTCT 16555 |||||||| | || |||| | || ||||| || || || ||||| || || Sbjct 188904 AAAACCGAGTTTGCTCTGACCGTGGCTGAAGGTGTTGCGGAAAGTACTATTC--GGATC- 188960 Query 16556 GGCG---------TCCGGCGCGGTGTGTTGATTTTCTCGATGGAAATGAGCGCCATTCAG 16606 |||| | | |||||| ||| |||||||| |||||||||||||| ||| Sbjct 188961 GGCGATGAGGTGTTGCCGCGCGGCGTGCTGATTTTCAGCATGGAAATGAGCGCTCAGCAG 189020 Query 16607 GTTGTTGAGAGAGGGATTGCCGGCGCAGGAATGATGTCGGTCAGTGTGCTGCGTAACCCG 16666 || | || | | | || ||||| || ||| |||| || ||||| || || Sbjct 189021 GTCATAGAACGCCAGTTGGCTGGCGCCTCAAACATGCCGGTGTCTGCCCTGCGCAAACCT 189080 Query 16667 TCACGAATGGACGATGAAGGATGGGCGAGAGTTGCAAGCGGGATGAAG----TTGCTGGC 16722 ||||| ||| ||||||||| ||||| | | | | || || ||| | ||||| Sbjct 189081 TCACGTATGAACGATGAAGACTGGGCACGCATATCGATGGGCATTAAGCGTTTATCTGGC 189140 Query 16723 AGATCTGGATGTGTGGGTAGTTGACGCATCGCGTTTGTCTGTCGAAGAAATCAGGTCCAT 16782 ||| | |||||||| || || || ||| || | | || | ||| | | || Sbjct 189141 ----CTGCAGGTGTGGGTTGTCGATGCGTCGAAACTGACCATTGAGCAGATCCGCGCGAT 189196 Query 16783 TTCCGAACGCCACAAGCAGGAGCATCCTAATCTGTCACTGATTATGGCTGACTATCTCGG 16842 | | ||| | ||||| | | | | || ||||| || || || || || || || || Sbjct 189197 TGCGGAAAGGCACAAACGGAAATACCCAAATCTATCTCTCATCCTGTGCGATTACCTTGG 189256 Query 16843 GCTAATTGAGAAACCAAAAGCGGAACGTAATGACCTCGCCATAGCACATATCTCCGGTAG 16902 || || || || || || ||||| || ||||| || || || || |||||||| | Sbjct 189257 CCTGATCGAAAAGCCGCGTGCTGAACGAAACGACCTGGCGATCGCCCACATCTCCGGCGG 189316 Query 16903 CCTGAAAGCGATGGCGAAAGACCTGAAAACTCCAGTTATCTCCCTAAGCCAGCTTTCACG 16962 | ||||| |||||||| |||||||| || ||||| || || || || ||||| || || Sbjct 189317 CATGAAACGCATGGCGAAGGACCTGAAGACGCCAGTGATGTCACTTAGTCAGCTGTCCCG 189376 Query 16963 CGATGTTGAGAAGCGGCCAAAC------AAGCGCCCGACAAACGCAGATTTGCGTGATTC 17016 ||| || |||||||| ||||| || || ||| ||| | || |||| || Sbjct 189377 CGACGTGGAGAAGCGACCAAAGGGCCAGAAACGGCCGGTTAACTCTGACCTGCGCGACGG 189436 Query 17017 AGGAAGCATTGAACAGGATGCAGACTCAATCATCATGCTTTACCGTGAAGCGGTATACGA 17076 || ||||| || ||||| || ||| || ||||| ||||| |||| ||| || || Sbjct 189437 GGGGAGCATCGAGCAGGACGCCGACGGGATTTATATGCTGTACCGCGAAGGGGTGTATGA 189496 Query 17077 -CGAGAACAGTAGCGCCGCACCATTTGCTGAAATCATTGTGACGAAAAACCGTTTTGGCT 17135 | ||| || ||||| || || ||||||||||| ||||| || ||||| ||||| Sbjct 189497 ACCCGAA-AGCCCTGCCGCGCCGTTCGCTGAAATCATCGTGACCAAGAACCGATTTGGTG 189555 Query 17136 CGCTTGGTACGGTTTACCAGCGGTTCTGCAACGGACACTT 17175 ||| ||||| |||||||||| |||| ||||| ||||| Sbjct 189556 AGCTCGGTACCGTTTACCAGCAGTTCAAAAACGGGCACTT 189595 Score = 158 bits (174), Expect = 3e-34 Identities = 152/195 (78%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 3137 GTGGGACATATTTGGGACAGAAGTACCAAAAATCGAGTCAATTTGTCGAGCATGTTCAGT 3196 |||||||| ||||||||||||| |||||||| | ||| || || || || || || Sbjct 175480 GTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTCCGT 175539 Query 3197 CAGGTGATTTGGTGCCAGATGAGCATATCTGCGAACCATTTCGATAGACTCCCAGCCACC 3256 | ||||| || |||||||| || |||| || ||||| ||||| ||||||||||| || Sbjct 175540 TAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCCGCC 175599 Query 3257 CATTTCCTGCAATACCGAAATCGGAACGCCAGCCTGAACTAACCAGCTTGCCCACGTGTG 3316 ||||||||| | || || | ||| || || ||||||| | |||||||||||| ||||| Sbjct 175600 CATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGTGTG 175659 Query 3317 CCTCAGGTCATGAAA 3331 |||||||| ||||| Sbjct 175660 TCTCAGGTCGTGAAA 175674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132221433288724