Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq223 596 9e-166 seq25848 104 1e-17 seq785 96.9 2e-15 >seq223 Length=511576 Score = 596 bits (660), Expect = 9e-166 Identities = 918/1304 (70%), Gaps = 12/1304 (1%) Strand=Plus/Minus Query 71337 GCAGAACAAGCTGTACTTGGTGGCTTAATGCTTGATAACTGCCGCTGGGATGAAGTTGCA 71396 || |||||| | || || || || | ||||| |||||| ||||||||| | || || Sbjct 475628 GCTGAACAATCCGTTCTGGGCGGGCTGATGCTGGATAACGAACGCTGGGATAACGTCGCC 475569 Query 71397 GATCGTATAGTTGCTGATGATTTTTATACCAGTGCTCATCGTGAAATTTTCAGTGAGATG 71456 || ||| | || |||| || | | | | | ||||| ||||||| || ||| Sbjct 475568 GAGCGTGTGGTCAGCAATGACTTCTTCAGCCGCCCGCATCGCCTGATTTTCACCGAAATG 475509 Query 71457 GAGAGGTTATTAAGTCATG-GCAAACCGATTGATTTGATAACACTTGCTGAAGCACTTGA 71515 || | || | | ||| |||||||||| || |||| || ||| ||||| | || || Sbjct 475508 CAGCGTTTGCTG-GAGATGAGCAAACCGATCGACCTGATTACGCTTTCTGAATCCCTGGA 475450 Query 71516 ACAGAACGGTAAATTAGAACGCGCCGGTGGTTTTGCGTACCTTGCGGAGATGTCAAAGAA 71575 |||||| || || | || || ||| ||||| || || || || ||| | || || || Sbjct 475449 ACAGAAAGGCGAACTGGATTCCGTCGGCGGTTTCGCCTATCTGGCAGAGCTCTCGAAAAA 475390 Query 71576 CACGCCCAGCTCGGCAAATATTTGTGCTTATGCGGATATCGTTCGTGAACGCGCGGTTGT 71635 ||| || || |||| ||||| | |||||||| || ||||| ||||||||||| || || Sbjct 475389 CACCCCAAGTGCGGCGAATATCGGCGCTTATGCCGACATCGTGCGTGAACGCGCAGTCGT 475330 Query 71636 TCGTGAAATGATTTCCGTCGCAAATGAAATAGCCGAAGCTGGATATG---CGCAGGATGG 71692 ||| ||||||||||||||||| |||||||| ||||| || || |||| |||||| | Sbjct 475329 TCGCGAAATGATTTCCGTCGCCAATGAAATTGCCGATGCGGGTTATGATCCGCAGGGGCG 475270 Query 71693 CAGGGGCAGCAATGAATTGCTGGATATGGCCGAGCGCCGCGTTTTTGAAATAGCTGAAAA 71752 ||| |||| | || ||||||| | ||||| |||||| || | || || ||| Sbjct 475269 CAG---CAGCGAAGACCTGCTGGACTTAGCCGAATCCCGCGTATTCCAGATTGCCGAATC 475213 Query 71753 ACGA--CAAAAGAGCGGTAGTGGTCCAAAAGATATCGCCAGCATTCTCGATGCAACGGTA 71810 || || | || | || | || ||| |||| | | ||||| || || || Sbjct 475212 CCGCGCCAGTAAAGACGAAG--GCCCGAAAAGCATCGACCGTATTCTGGAAAGCACCGTT 475155 Query 71811 TCTCGCATAGAAGAGTTGTTTCAGCGACCACATGATGGTGTAACGGGGCTTGATACGGGA 71870 || || || ||||| |||| ||||| || || || || ||||| || | || || Sbjct 475154 TCGCGTATCGAAGAACTGTTCCAGCGCCCGCACGACGGCGTAACCGGTGTGTCCACCGGC 475095 Query 71871 TTTACCGATCTCAATAAGAAGACGGCAGGGCTTCAGCCGTCCGATCTCATCATTGTCGCC 71930 | | | |||||| ||||||| || || || | || || ||||| ||||| || || Sbjct 475094 TATGCGGATCTCGATAAGAAAACCGCCGGTTTGCAAAAATCGGATCTGATCATCGTGGCG 475035 Query 71931 GCCCGCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTCGAAAATGCCGCAGTT 71990 || || || || ||||| || ||||||||||| ||||| |||| ||||||||| || | Sbjct 475034 GCACGTCCGTCGATGGGTAAAACCACGTTTGCAATGAACCTCGCCGAAAATGCGGCGATG 474975 Query 71991 CGTAACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCACCAGCTGATGATG 72050 | ||||| || || || | || || ||||||||||| || ||||| | |||||| Sbjct 474974 ATGCAGGATAAACCGGTCTTAATCTTCAGTCTTGAGATGCCCGGCGACCAGATCATGATG 474915 Query 72051 CGCTCACTGGCTTCTCTTGCACGCGTTGATCAGACTCGTATTCGGACAGGGCAACTTAAC 72110 || ||||| || ||| | ||||| || ||||| || || || || || ||| | Sbjct 474914 CGTATGCTGGCGTCGCTTTCCCGCGTCGACCAGACCAAAATCCGTACCGGTCAGCTTGAT 474855 Query 72111 GACGAGGATTGGGCGCGGGTTTCTGGCGCAATGGGTATTCTGTTGGACAAGCAGAATATT 72170 ||||| || |||||||| |||| || | ||||| || ||| | || || | || || Sbjct 474854 GACGAAGACTGGGCGCGAATTTCCAGCACCATGGGGATCCTGCTCGAAAAACGTAACATG 474795 Query 72171 TTTATTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTT 72230 | ||| |||||||| || ||||||||| || || | ||||| ||||| || ||| | Sbjct 474794 TATATCGATGACTCGTCCGGCCTGACGCCAACGGAAGTCCGTTCGCGCGCGCGCCGTATC 474735 Query 72231 TATAAAGAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCAACTTATGCGCGTC 72290 | ||| | || ||| |||| |||| ||||| ||||| || || || |||||||| Sbjct 474734 TTCCGTGAACACGGCGGTCTGAGTCTGATCATGATTGACTATCTCCAGCTGATGCGCGTT 474675 Query 72291 CCCGAGCTGCAAGATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCG 72350 || |||| |||||||| ||||||||||| ||||| || || ||||| || || ||| Sbjct 474674 CCGTCGCTGTCCGATAACCGTACGCTGGAAATCGCCGAAATCTCCCGCTCGCTTAAAGCG 474615 Query 72351 TTGGCGAAGGAATTACAAGTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAA 72410 ||||||| ||||| || || ||||||||||| |||| || ||||| ||| || || Sbjct 474614 CTGGCGAAAGAATTGCAGGTGCCGGTGGTGGCGCTGTCGCAGCTTAACCGAAGCCTGGAG 474555 Query 72411 CAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAG 72470 || ||||| || ||||| ||||| || || || |||||||||||||| | || |||||| Sbjct 474554 CAACGTGCCGATAAACGCCCGGTCAACTCCGACTTACGTGAATCAGGTTCCATCGAGCAG 474495 Query 72471 GACGCAGACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATG 72530 ||||| ||| | || ||||| | ||||| ||||| ||||||||| | || ||| Sbjct 474494 GACGCCGACTTAATCATGTTCATCTATCGTGACGAGGTTTATCACGATAACAGTGAAGAA 474435 Query 72531 AAGGGCATTGCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGA 72590 || ||||| || | | || |||| || ||||| || ||||| || || || || | Sbjct 474434 AAAGGCATCGCGCAAATCATCCTCGGTAAACAACGTAACGGCCCGATCGGTACCGTCCGC 474375 Query 72591 TTGGCTTTTAACGGCCAATACTCACGGTTTGATAACTATGCCGG 72634 || | |||||||| || | || || |||||||| || | ||| Sbjct 474374 CTGACCTTTAACGGTCAGTGGTCGCGATTTGATAATTACGGCGG 474331 Score = 185 bits (204), Expect = 5e-42 Identities = 247/343 (72%), Gaps = 3/343 (1%) Strand=Plus/Minus Query 21063 GGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGATCAGGTATATA 21122 || ||||||||||| || || | |||| ||||| ||||||||||| || | || || Sbjct 459875 GGCGTAAACAAAGTTATTCTCGTCGGTAATCTGGGACAAGACCCGGAAGTCCGCTACATG 459816 Query 21123 CCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATGAATCATGGCGCGACAAG 21182 || || ||||||||||| | | ||| | |||||| ||| ||||| ||||| Sbjct 459815 CCTAACGGCGGCGCGGTTGCCAACATCACTCTGGCAACGTCTGAGAGCTGGCGTGACAAA 459756 Query 21183 CAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAACTT 21242 || ||| | |||||||| |||| |||||||| || || |||||||| ||| | Sbjct 459755 GCCACCGGCGAGCAGAAAGAAAAAACGGAATGGCACCGTGTGGTGTTGTTCGGCAAATTA 459696 Query 21243 GCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGGAAACTT 21302 || ||| | || | || || | |||||||||||||||||||||||||| ||| Sbjct 459695 GCAGAAGTCGCAGGCGAATACCTGAAGAAAGGTTCTCAGGTCTACATCGAAGGCGCACTG 459636 Query 21303 AAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACACGACGGAAATTATCGTC 21362 |||||||||| ||||| ||| | || || || ||| ||||| || ||| | |||| Sbjct 459635 CAAACCCGTAAATGGACCGATCAGGCTGGCGTTGAAAAATACACCACCGAAGTCGTCGTT 459576 Query 21363 AGCCAGGGCGGCACCATGCAAATGATCGGCGCTCGCCGTGACG 21405 | | ||||||||||||||| ||| |||||| |||||| || Sbjct 459575 AACGTGGGCGGCACCATGCAGATGCTCGGCG---GCCGTGCCG 459536 >seq25848 Length=116905 Score = 104 bits (114), Expect = 1e-17 Identities = 232/343 (68%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 21052 TGGCACAACGCGGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGA 21111 ||||| |||| || | |||||||||||| | | |||| | || || | |||||| Sbjct 107981 TGGCAGAACGTGGAATTAACAAAGTCATCATCGTGGGTAATTTAGGTCAGGCACCGGAGC 108040 Query 21112 TCAGGTATATACCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATGAATCAT 21171 | | || || || || ||||||||||| | || || | | || ||| ||| | Sbjct 108041 TGCGCTACATGCCGAACGGCGGCGCGGTGGCGAGCCTGACGCTGGCCACGTCCGAAAACT 108100 Query 21172 GGCGCGACAAGCAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGT 21231 |||| ||||| || ||| | ||| || |||| || ||||| || || ||| Sbjct 108101 GGCGTGACAAAGCCACCGGCGAGCAGCGCGAAAAAACCGAGTGGCACCGCGTGGTCGTGT 108160 Query 21232 TCGGAAAACTTGCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCG 21291 ||||||| || || |||||||| |||| || | || || | | |||||||||| Sbjct 108161 TCGGAAAGCTGGCCGAAATTGCCGGTGAATACCTGACCAAGGGCGCAAAAGTCTACATCG 108220 Query 21292 AAGGGAAACTTAAAACCCGTAAGTGGACAGATGACGC-CGGTGTAGAACGTTACACGACG 21350 |||| | || | ||||| || ||| |||| ||| ||| | || |||||||| ||| Sbjct 108221 AAGGCCAGCTGCAGACCCGCAAATGGCAGGATG-CGCAGGGTATCGACCGTTACACCACG 108279 Query 21351 GAAATTATCGTC-AGCCAGGGCGGCACCATGCAAATGATCGGC 21392 |||||| ||| || || |||||| ||||| ||| | ||| Sbjct 108280 GAAATTGCGGTCAAGGCA-AACGGCACGATGCAGATGCTGGGC 108321 >seq785 Length=396209 Score = 96.9 bits (106), Expect = 2e-15 Identities = 72/83 (87%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 70932 CGGCCCTTTAGCTCAGT-GGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAA 70990 ||||||||||||||||| ||||||||| ||||||||||||||| |||| | ||||||| Sbjct 187972 CGGCCCTTTAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTGGTCGCTGGTTCAA 187913 Query 70991 GTCCGGTAGGGGCCACCATATTT 71013 |||| | | ||||||||| |||| Sbjct 187912 GTCCAGCAAGGGCCACCAAATTT 187890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 302980811631714