Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_005856.1
Length=94800
Score E
Sequences producing significant alignments: (Bits) Value
seq223 596 9e-166
seq25848 104 1e-17
seq785 96.9 2e-15
>seq223
Length=511576
Score = 596 bits (660), Expect = 9e-166
Identities = 918/1304 (70%), Gaps = 12/1304 (1%)
Strand=Plus/Minus
Query 71337 GCAGAACAAGCTGTACTTGGTGGCTTAATGCTTGATAACTGCCGCTGGGATGAAGTTGCA 71396
|| |||||| | || || || || | ||||| |||||| ||||||||| | || ||
Sbjct 475628 GCTGAACAATCCGTTCTGGGCGGGCTGATGCTGGATAACGAACGCTGGGATAACGTCGCC 475569
Query 71397 GATCGTATAGTTGCTGATGATTTTTATACCAGTGCTCATCGTGAAATTTTCAGTGAGATG 71456
|| ||| | || |||| || | | | | | ||||| ||||||| || |||
Sbjct 475568 GAGCGTGTGGTCAGCAATGACTTCTTCAGCCGCCCGCATCGCCTGATTTTCACCGAAATG 475509
Query 71457 GAGAGGTTATTAAGTCATG-GCAAACCGATTGATTTGATAACACTTGCTGAAGCACTTGA 71515
|| | || | | ||| |||||||||| || |||| || ||| ||||| | || ||
Sbjct 475508 CAGCGTTTGCTG-GAGATGAGCAAACCGATCGACCTGATTACGCTTTCTGAATCCCTGGA 475450
Query 71516 ACAGAACGGTAAATTAGAACGCGCCGGTGGTTTTGCGTACCTTGCGGAGATGTCAAAGAA 71575
|||||| || || | || || ||| ||||| || || || || ||| | || || ||
Sbjct 475449 ACAGAAAGGCGAACTGGATTCCGTCGGCGGTTTCGCCTATCTGGCAGAGCTCTCGAAAAA 475390
Query 71576 CACGCCCAGCTCGGCAAATATTTGTGCTTATGCGGATATCGTTCGTGAACGCGCGGTTGT 71635
||| || || |||| ||||| | |||||||| || ||||| ||||||||||| || ||
Sbjct 475389 CACCCCAAGTGCGGCGAATATCGGCGCTTATGCCGACATCGTGCGTGAACGCGCAGTCGT 475330
Query 71636 TCGTGAAATGATTTCCGTCGCAAATGAAATAGCCGAAGCTGGATATG---CGCAGGATGG 71692
||| ||||||||||||||||| |||||||| ||||| || || |||| |||||| |
Sbjct 475329 TCGCGAAATGATTTCCGTCGCCAATGAAATTGCCGATGCGGGTTATGATCCGCAGGGGCG 475270
Query 71693 CAGGGGCAGCAATGAATTGCTGGATATGGCCGAGCGCCGCGTTTTTGAAATAGCTGAAAA 71752
||| |||| | || ||||||| | ||||| |||||| || | || || |||
Sbjct 475269 CAG---CAGCGAAGACCTGCTGGACTTAGCCGAATCCCGCGTATTCCAGATTGCCGAATC 475213
Query 71753 ACGA--CAAAAGAGCGGTAGTGGTCCAAAAGATATCGCCAGCATTCTCGATGCAACGGTA 71810
|| || | || | || | || ||| |||| | | ||||| || || ||
Sbjct 475212 CCGCGCCAGTAAAGACGAAG--GCCCGAAAAGCATCGACCGTATTCTGGAAAGCACCGTT 475155
Query 71811 TCTCGCATAGAAGAGTTGTTTCAGCGACCACATGATGGTGTAACGGGGCTTGATACGGGA 71870
|| || || ||||| |||| ||||| || || || || ||||| || | || ||
Sbjct 475154 TCGCGTATCGAAGAACTGTTCCAGCGCCCGCACGACGGCGTAACCGGTGTGTCCACCGGC 475095
Query 71871 TTTACCGATCTCAATAAGAAGACGGCAGGGCTTCAGCCGTCCGATCTCATCATTGTCGCC 71930
| | | |||||| ||||||| || || || | || || ||||| ||||| || ||
Sbjct 475094 TATGCGGATCTCGATAAGAAAACCGCCGGTTTGCAAAAATCGGATCTGATCATCGTGGCG 475035
Query 71931 GCCCGCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTCGAAAATGCCGCAGTT 71990
|| || || || ||||| || ||||||||||| ||||| |||| ||||||||| || |
Sbjct 475034 GCACGTCCGTCGATGGGTAAAACCACGTTTGCAATGAACCTCGCCGAAAATGCGGCGATG 474975
Query 71991 CGTAACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCACCAGCTGATGATG 72050
| ||||| || || || | || || ||||||||||| || ||||| | ||||||
Sbjct 474974 ATGCAGGATAAACCGGTCTTAATCTTCAGTCTTGAGATGCCCGGCGACCAGATCATGATG 474915
Query 72051 CGCTCACTGGCTTCTCTTGCACGCGTTGATCAGACTCGTATTCGGACAGGGCAACTTAAC 72110
|| ||||| || ||| | ||||| || ||||| || || || || || ||| |
Sbjct 474914 CGTATGCTGGCGTCGCTTTCCCGCGTCGACCAGACCAAAATCCGTACCGGTCAGCTTGAT 474855
Query 72111 GACGAGGATTGGGCGCGGGTTTCTGGCGCAATGGGTATTCTGTTGGACAAGCAGAATATT 72170
||||| || |||||||| |||| || | ||||| || ||| | || || | || ||
Sbjct 474854 GACGAAGACTGGGCGCGAATTTCCAGCACCATGGGGATCCTGCTCGAAAAACGTAACATG 474795
Query 72171 TTTATTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTT 72230
| ||| |||||||| || ||||||||| || || | ||||| ||||| || ||| |
Sbjct 474794 TATATCGATGACTCGTCCGGCCTGACGCCAACGGAAGTCCGTTCGCGCGCGCGCCGTATC 474735
Query 72231 TATAAAGAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCAACTTATGCGCGTC 72290
| ||| | || ||| |||| |||| ||||| ||||| || || || ||||||||
Sbjct 474734 TTCCGTGAACACGGCGGTCTGAGTCTGATCATGATTGACTATCTCCAGCTGATGCGCGTT 474675
Query 72291 CCCGAGCTGCAAGATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCG 72350
|| |||| |||||||| ||||||||||| ||||| || || ||||| || || |||
Sbjct 474674 CCGTCGCTGTCCGATAACCGTACGCTGGAAATCGCCGAAATCTCCCGCTCGCTTAAAGCG 474615
Query 72351 TTGGCGAAGGAATTACAAGTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAA 72410
||||||| ||||| || || ||||||||||| |||| || ||||| ||| || ||
Sbjct 474614 CTGGCGAAAGAATTGCAGGTGCCGGTGGTGGCGCTGTCGCAGCTTAACCGAAGCCTGGAG 474555
Query 72411 CAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAG 72470
|| ||||| || ||||| ||||| || || || |||||||||||||| | || ||||||
Sbjct 474554 CAACGTGCCGATAAACGCCCGGTCAACTCCGACTTACGTGAATCAGGTTCCATCGAGCAG 474495
Query 72471 GACGCAGACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATG 72530
||||| ||| | || ||||| | ||||| ||||| ||||||||| | || |||
Sbjct 474494 GACGCCGACTTAATCATGTTCATCTATCGTGACGAGGTTTATCACGATAACAGTGAAGAA 474435
Query 72531 AAGGGCATTGCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGA 72590
|| ||||| || | | || |||| || ||||| || ||||| || || || || |
Sbjct 474434 AAAGGCATCGCGCAAATCATCCTCGGTAAACAACGTAACGGCCCGATCGGTACCGTCCGC 474375
Query 72591 TTGGCTTTTAACGGCCAATACTCACGGTTTGATAACTATGCCGG 72634
|| | |||||||| || | || || |||||||| || | |||
Sbjct 474374 CTGACCTTTAACGGTCAGTGGTCGCGATTTGATAATTACGGCGG 474331
Score = 185 bits (204), Expect = 5e-42
Identities = 247/343 (72%), Gaps = 3/343 (1%)
Strand=Plus/Minus
Query 21063 GGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGATCAGGTATATA 21122
|| ||||||||||| || || | |||| ||||| ||||||||||| || | || ||
Sbjct 459875 GGCGTAAACAAAGTTATTCTCGTCGGTAATCTGGGACAAGACCCGGAAGTCCGCTACATG 459816
Query 21123 CCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATGAATCATGGCGCGACAAG 21182
|| || ||||||||||| | | ||| | |||||| ||| ||||| |||||
Sbjct 459815 CCTAACGGCGGCGCGGTTGCCAACATCACTCTGGCAACGTCTGAGAGCTGGCGTGACAAA 459756
Query 21183 CAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAACTT 21242
|| ||| | |||||||| |||| |||||||| || || |||||||| ||| |
Sbjct 459755 GCCACCGGCGAGCAGAAAGAAAAAACGGAATGGCACCGTGTGGTGTTGTTCGGCAAATTA 459696
Query 21243 GCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGGAAACTT 21302
|| ||| | || | || || | |||||||||||||||||||||||||| |||
Sbjct 459695 GCAGAAGTCGCAGGCGAATACCTGAAGAAAGGTTCTCAGGTCTACATCGAAGGCGCACTG 459636
Query 21303 AAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACACGACGGAAATTATCGTC 21362
|||||||||| ||||| ||| | || || || ||| ||||| || ||| | ||||
Sbjct 459635 CAAACCCGTAAATGGACCGATCAGGCTGGCGTTGAAAAATACACCACCGAAGTCGTCGTT 459576
Query 21363 AGCCAGGGCGGCACCATGCAAATGATCGGCGCTCGCCGTGACG 21405
| | ||||||||||||||| ||| |||||| |||||| ||
Sbjct 459575 AACGTGGGCGGCACCATGCAGATGCTCGGCG---GCCGTGCCG 459536
>seq25848
Length=116905
Score = 104 bits (114), Expect = 1e-17
Identities = 232/343 (68%), Gaps = 4/343 (1%)
Strand=Plus/Plus
Query 21052 TGGCACAACGCGGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGA 21111
||||| |||| || | |||||||||||| | | |||| | || || | ||||||
Sbjct 107981 TGGCAGAACGTGGAATTAACAAAGTCATCATCGTGGGTAATTTAGGTCAGGCACCGGAGC 108040
Query 21112 TCAGGTATATACCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATGAATCAT 21171
| | || || || || ||||||||||| | || || | | || ||| ||| |
Sbjct 108041 TGCGCTACATGCCGAACGGCGGCGCGGTGGCGAGCCTGACGCTGGCCACGTCCGAAAACT 108100
Query 21172 GGCGCGACAAGCAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGT 21231
|||| ||||| || ||| | ||| || |||| || ||||| || || |||
Sbjct 108101 GGCGTGACAAAGCCACCGGCGAGCAGCGCGAAAAAACCGAGTGGCACCGCGTGGTCGTGT 108160
Query 21232 TCGGAAAACTTGCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCG 21291
||||||| || || |||||||| |||| || | || || | | ||||||||||
Sbjct 108161 TCGGAAAGCTGGCCGAAATTGCCGGTGAATACCTGACCAAGGGCGCAAAAGTCTACATCG 108220
Query 21292 AAGGGAAACTTAAAACCCGTAAGTGGACAGATGACGC-CGGTGTAGAACGTTACACGACG 21350
|||| | || | ||||| || ||| |||| ||| ||| | || |||||||| |||
Sbjct 108221 AAGGCCAGCTGCAGACCCGCAAATGGCAGGATG-CGCAGGGTATCGACCGTTACACCACG 108279
Query 21351 GAAATTATCGTC-AGCCAGGGCGGCACCATGCAAATGATCGGC 21392
|||||| ||| || || |||||| ||||| ||| | |||
Sbjct 108280 GAAATTGCGGTCAAGGCA-AACGGCACGATGCAGATGCTGGGC 108321
>seq785
Length=396209
Score = 96.9 bits (106), Expect = 2e-15
Identities = 72/83 (87%), Gaps = 1/83 (1%)
Strand=Plus/Minus
Query 70932 CGGCCCTTTAGCTCAGT-GGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAA 70990
||||||||||||||||| ||||||||| ||||||||||||||| |||| | |||||||
Sbjct 187972 CGGCCCTTTAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTGGTCGCTGGTTCAA 187913
Query 70991 GTCCGGTAGGGGCCACCATATTT 71013
|||| | | ||||||||| ||||
Sbjct 187912 GTCCAGCAAGGGCCACCAAATTT 187890
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 302980811631714
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