Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_005859.1 Length=121750 Score E Sequences producing significant alignments: (Bits) Value seq785 104 2e-17 seq828 102 6e-17 >seq785 Length=396209 Score = 104 bits (114), Expect = 2e-17 Identities = 251/374 (67%), Gaps = 12/374 (3%) Strand=Plus/Minus Query 54501 ACTGAAAAAGAAGTCTATGATGCTTGTCAGGGTCTAGAGTATGAGATCAATACGATGTTC 54560 || |||||||| ||||| || | ||| || || |||||| | |||||| || | Sbjct 142709 ACCGAAAAAGAGTGTTATGACGCCTTCCAGTCGCTGGAATATGAGGTTAATACGCTGCAC 142650 Query 54561 AACTCTAATGGTCAGAGTCCATTTATTACTTTTGGTTTTGGTCTAGGAACTTCTTGGGAA 54620 | | | || || |||| || ||| | || || |||||||| || || || || |||||| Sbjct 142649 ACCGCCAACGGCCAGACGCCGTTTGTCACCTTCGGTTTTGGCCTCGGCACATCCTGGGAA 142590 Query 54621 GCACGTCTAATACAGAAAGCAATACTGAAAGTA--CGTATGGATGGCTTAGGCATCAAT- 54677 | || || || ||| || |||| ||| ||| || || | || | |||| ||| Sbjct 142589 TCGCGCCTGATCCAGCAATCAATTCTGC--GTAACCGCATTGCCGGACTGGGCAAAAATC 142532 Query 54678 --AAACGTACAGCTATCTTTCCGAAACTGGTGTTTGTTCTGCGTGATGGCGTAAAT-ATG 54734 ||| || ||| | || || ||||||||||||| | ||||| ||| | ||| || Sbjct 142531 GCAAA---ACCGCTGTATTCCCAAAACTGGTGTTTGCCATCCGTGACGGCCTGAATCATA 142475 Query 54735 AAGCCTGGAGATGTTAATTATGACATCAAGAAGTTAGCTATGAAATGTACTGCTGAACGT 54794 ||||| || || | || || ||||||||| | | || || |||| | | ||| Sbjct 142474 AAGCC-GGTGACGCCAACTACGACATCAAGCAACTGGCACTGGAATGCGCCAGCAAGCGT 142416 Query 54795 ATGTATCCAGACTATATCAGCTATGATAAGGTTGTGGAAGTTACTGGTGACTATAAAGTT 54854 ||||| || ||| ||| |||||| |||| ||| |||| || ||| | ||| Sbjct 142415 ATGTACCCGGACATCCTCAATTATGATCAGGTGGTGAAAGTCACAGGTTCGTTCAAAACG 142356 Query 54855 TCTATGGGCTGCCG 54868 | ||||||||||| Sbjct 142355 CCGATGGGCTGCCG 142342 >seq828 Length=218660 Score = 102 bits (112), Expect = 6e-17 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 27668 AGTAAATGTACGACTAATAACGTCGTTCTGCTGTTCACGCGTCAGTGCGTTAAAACGCAC 27727 ||| || ||||| |||| ||||| |||||||||| ||||||| ||| ||||| || Sbjct 42143 AGTGAAAGTACGGGTAATCACGTCACGCTGCTGTTCAGCAGTCAGTGAGTTGAAACGTAC 42202 Query 27728 AGCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTTCTGTGCATC 27787 || || || || ||||| ||||| | || |||||||| ||||||||||| ||||| Sbjct 42203 CGCATAGCCAGACACACGAATAGTCAGCTGTGGGTATTTCTCAGGATGTTTAACCGCATC 42262 Query 27788 CAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGTTGACCACCTTC 27838 || ||||||| | || || || || ||||| ||||||||||| Sbjct 42263 TTCCAGTGTTTCACGACGCAGTACGTTAACGTTCAGGTGCTGACCACCTTC 42313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 389148463656014