Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq66553 125 4e-24 seq3717 122 5e-23 seq26422 120 2e-22 seq205 120 2e-22 seq5866 118 6e-22 seq19657 114 7e-21 seq2097 113 2e-20 seq290 111 8e-20 seq57961 84.2 1e-11 >seq66553 Length=891 Score = 125 bits (138), Expect = 4e-24 Identities = 84/93 (90%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| ||||||| || |||||||||| |||||||||| ||||||||||||||||| Sbjct 144 AATTAAAAAAAAAT-AATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 86 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 85 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 53 >seq3717 Length=113120 Score = 122 bits (134), Expect = 5e-23 Identities = 83/93 (89%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||| |||| | ||||| ||||||||| |||||||||| ||||||||||||||||| Sbjct 80642 ATTAACAAAAGAGAAAATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 80701 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 80702 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 80734 >seq26422 Length=18158 Score = 120 bits (132), Expect = 2e-22 Identities = 83/95 (87%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||| |||| |||||| ||||||||||| |||||||||| ||||||||||||||| Sbjct 17563 AGATTTAAAAAAAAAAATGGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTAT 17504 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||||||||||||||||| Sbjct 17503 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 17469 >seq205 Length=216154 Score = 120 bits (132), Expect = 2e-22 Identities = 77/85 (91%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 119810 AAAAATAAACGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 119869 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 119870 CTCTAACCAACTGAGCTAATGGGCC 119894 >seq5866 Length=39533 Score = 118 bits (130), Expect = 6e-22 Identities = 80/89 (90%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| | || ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 26239 AATAAAATAG-AAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 26181 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 26180 GACGCTCTAACCAACTGAGCTAATGGGCC 26152 >seq19657 Length=19226 Score = 114 bits (126), Expect = 7e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 14742 AAAAAAAAACGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 14683 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 14682 CTCTAACCAACTGAGCTAATGGGCC 14658 >seq2097 Length=104662 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 40912 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 40971 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 40972 TGAGCTAATGGGCC 40985 >seq290 Length=170328 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| |||| |||||||||||||||||||||||| ||||| Sbjct 132368 TTGGCCCATGAGGGGATCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTAACCAA 132309 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 132308 CTGAGCTAATGGGCC 132294 >seq57961 Length=2170 Score = 84.2 bits (92), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 9/102 (9%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||| | || ||| | ||||| || ||||||||||| |||||||||| |||||||| Sbjct 128 AAATCAATAAATAAAATAAAATAGAAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTC 187 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| ||| ||||||||||||||| Sbjct 188 GCGTTATTAGCACGATGCT--------CTGAGCTAATGGGCC 221 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261271831273384