Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq66553 125 4e-24
seq3717 122 5e-23
seq26422 120 2e-22
seq205 120 2e-22
seq5866 118 6e-22
seq19657 114 7e-21
seq2097 113 2e-20
seq290 111 8e-20
seq57961 84.2 1e-11
>seq66553
Length=891
Score = 125 bits (138), Expect = 4e-24
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
|||||| ||||||| || |||||||||| |||||||||| |||||||||||||||||
Sbjct 144 AATTAAAAAAAAAT-AATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 86
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||| ||||||||||||||||||||
Sbjct 85 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 53
>seq3717
Length=113120
Score = 122 bits (134), Expect = 5e-23
Identities = 83/93 (89%), Gaps = 1/93 (1%)
Strand=Plus/Plus
Query 11438 ATTAATAAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
||||| |||| | ||||| ||||||||| |||||||||| |||||||||||||||||
Sbjct 80642 ATTAACAAAAGAGAAAATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 80701
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||| ||||||||||||||||||||
Sbjct 80702 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 80734
>seq26422
Length=18158
Score = 120 bits (132), Expect = 2e-22
Identities = 83/95 (87%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494
||| |||| |||||| ||||||||||| |||||||||| |||||||||||||||
Sbjct 17563 AGATTTAAAAAAAAAAATGGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTAT 17504
Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||| ||||||||||||||||||||
Sbjct 17503 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 17469
>seq205
Length=216154
Score = 120 bits (132), Expect = 2e-22
Identities = 77/85 (91%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
|||||| || |||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 119810 AAAAATAAACGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 119869
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| ||||||||||||||||||||
Sbjct 119870 CTCTAACCAACTGAGCTAATGGGCC 119894
>seq5866
Length=39533
Score = 118 bits (130), Expect = 6e-22
Identities = 80/89 (90%), Gaps = 1/89 (1%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
||||||| | || ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 26239 AATAAAATAG-AAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 26181
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||
Sbjct 26180 GACGCTCTAACCAACTGAGCTAATGGGCC 26152
>seq19657
Length=19226
Score = 114 bits (126), Expect = 7e-21
Identities = 76/85 (89%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| || |||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 14742 AAAAAAAAACGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 14683
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| ||||||||||||||||||||
Sbjct 14682 CTCTAACCAACTGAGCTAATGGGCC 14658
>seq2097
Length=104662
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 40912 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 40971
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 40972 TGAGCTAATGGGCC 40985
>seq290
Length=170328
Score = 111 bits (122), Expect = 8e-20
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||||||| |||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct 132368 TTGGCCCATGAGGGGATCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTAACCAA 132309
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 132308 CTGAGCTAATGGGCC 132294
>seq57961
Length=2170
Score = 84.2 bits (92), Expect = 1e-11
Identities = 80/102 (78%), Gaps = 9/102 (9%)
Strand=Plus/Plus
Query 11429 AAATATAGAATTAATAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487
|||| | || ||| | ||||| || ||||||||||| |||||||||| ||||||||
Sbjct 128 AAATCAATAAATAAAATAAAATAGAAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTC 187
Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||| ||| |||||||||||||||
Sbjct 188 GCGTTATTAGCACGATGCT--------CTGAGCTAATGGGCC 221
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261271831273384
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |