Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq15643 141 8e-29 seq8521 113 4e-20 seq48539 107 2e-18 seq8056 104 2e-17 seq4062 91.5 1e-13 >seq15643 Length=27379 Score = 141 bits (156), Expect = 8e-29 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | ||| | ||| ||||| | || || ||||| || | || ||||| | Sbjct 12273 CCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATC--TG 12216 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || | |||||| |||||||||||| | ||||| || || ||||||||||||| Sbjct 12215 AAAGGGTACGTCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAG 12156 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||||||||| | || || || ||||| ||| |||||||| | | || | Sbjct 12155 GGATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTA 12096 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| ||||||||||| || ||||| || ||||| || |||||||| Sbjct 12095 CCTCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 12047 >seq8521 Length=40141 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| | |||| | ||| || ||||| |||||| Sbjct 2443 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTTCCG 2384 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| || || ||||||||||| || |||||||| ||||| | ||||| |||||| Sbjct 2383 GCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTGTCCTGGATTTTGGCCTTG 2324 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | | |||| | | | || || || | || ||||| || || || | ||| Sbjct 2323 ACATTCTCAATACTGTCCGAGGGTTCAACCTCCAGTGTAATGGTCTTGCCGGTCAAAGTC 2264 Query 94991 TTCACAAAGATCTGCAT 95007 || |||||||||||||| Sbjct 2263 TTGACAAAGATCTGCAT 2247 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| |||||| | ||||| || || ||||||||||| ||||||||||| || Sbjct 2630 ATCTTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTT 2571 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| || | | ||||| | | | || || || | ||||| Sbjct 2570 GTCTTGGATCTTGGCCTTAACATTCTCTATGGTGTCGGAGGGCTCAACCTCGAGGGTGAT 2511 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| ||||| || || ||||||||||| Sbjct 2510 TGTCTTCCCAGTCAGAGTCTTGACGAAGATCTGCAT 2475 Score = 100 bits (110), Expect = 3e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | ||| || ||||| || | |||||| || | || || | ||| | Sbjct 2227 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAG--AGAGGGTACGTCCATCTT 2170 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||||| |||||| | ||||| || || ||||||||||| || |||||||| || || | Sbjct 2169 CCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCCT 2110 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || || || || | | ||||||| | | || || || | ||||| || | Sbjct 2109 GGATCTTGGCTTTCACATTCTCAATTGTGTCAGAGGGCTCAACCTCTAGGGTGATTGTCT 2050 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || ||||| || ||||| || |||||||| Sbjct 2049 TGCCGGTAAGGGTCTTCACGAAAATCTGCAT 2019 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | || || || ||||| | ||| || ||| | || || | ||| | Sbjct 2911 ACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGG--AAAGGGTACGTCCATCTT 2854 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| || ||||| ||||||| || || ||||||||||| || |||||||| || || | Sbjct 2853 CCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCCT 2794 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || || || || | | ||||| | | | || || || | |||||||| | Sbjct 2793 GGATCTTGGCTTTCACATTCTCAATTGTGTCTGAGGGCTCAACCTCTAGGGTGATGGTCT 2734 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || ||||| |||||||||||||| Sbjct 2733 TCCCGGTCAGGGTTTTGACAAAGATCTGCAT 2703 >seq48539 Length=7100 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | || | ||||||||| | || ||||||||||| | || |||||| Sbjct 6485 CCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGG-- 6428 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || ||| | || |||| ||| || || | || || | || ||||||||||||| Sbjct 6427 AGAGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAG 6368 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | |||||||||||||| | |||||||||||| ||| | | || || | | || | Sbjct 6367 GGATACCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCA 6308 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || | || || || || ||||| | |||||||| || ||||||||| Sbjct 6307 CCTCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATG 6258 Score = 107 bits (118), Expect = 2e-18 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||| || | || || | |||||||| | |||||||| ||||| | Sbjct 6726 AAAAATCTGCATTCCACCACGCAGACGGAGGACCAAGTGAAGGGTAGATTCTTTTTGGAT 6667 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || || ||| | ||| |||||||| ||| ||||| | ||||| || || || Sbjct 6666 ATTGTAGTCGGAAAGGGTGCGTCCATCCTCCAACTGCTTTCCTGCGAAGATCAACCTCTG 6607 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||||||||| || ||||| ||||| | || || || ||||| | | ||||| Sbjct 6606 CTGATCTGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCAATTGTGTC 6547 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || | || || || ||||| ||||| || || || ||||||||||| Sbjct 6546 AGAAGGCTCAACTTCTAGAGTAATAGTCTTTCCGGTAAGGGTCTTTACGAAGATCTGCAT 6487 Query 95008 GC 95009 || Sbjct 6486 GC 6485 Score = 107 bits (118), Expect = 2e-18 Identities = 167/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||| || | || || | |||||||| | || || |||||||| | ||| | Sbjct 6949 TTTGCATTCCACCACGCAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGT 6890 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || | || || | ||| |||| || ||||| ||||||| || || ||||| Sbjct 6889 AGTCCG--AAAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTG 6832 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 |||||| ||||| ||||| ||||| | ||| || ||||| || | | || || | Sbjct 6831 ATCTGGGGGAATTCCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCTGA 6772 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||||||||| |||||||| || || ||||| |||||||| Sbjct 6771 GGGTTCAACTTCCAAGGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATCTGCAT 6715 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || || || || ||||||| || || ||||||||||| ||||||||||| || Sbjct 7098 ATCTTCAAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTT 7039 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || || || || | | || || | | | || || || | || || Sbjct 7038 GTCTTGGATCTTGGCTTTAACATTTTCAATGGTATCTGAGGGCTCAACCTCGAGTGTTAT 6979 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| ||||| ||||| || || ||||| ||||| Sbjct 6978 GGTTTTACCAGTCAGAGTCTTGACGAAGATTTGCAT 6943 >seq8056 Length=34938 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | || | |||||| || | || || ||||| || | || |||||| Sbjct 32129 CCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGG-- 32072 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || || ||| || | |||||||| | ||||| | | ||| ||||| |||| Sbjct 32071 AAAGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAG 32012 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| ||||||||||| | |||||| ||||| || ||| || || | | | || | Sbjct 32011 GAATTCCTTCTTTGTCTTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAA 31952 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 | || | ||||| || ||||| || | ||||||||| || ||||||||| || Sbjct 31951 CCTCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCATGATT 31899 Score = 100 bits (110), Expect = 3e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | ||||| || | || | |||||||| || || | ||| || ||| Sbjct 32357 CCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGG-- 32300 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || | ||| |||||||| || || | || || || || ||||||||||| | Sbjct 32299 AGAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGG 32240 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| || || | |||||| ||||||||| | | ||| || | | | |||| Sbjct 32239 GGATGCCTTCCTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGA 32180 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | ||||| || || ||||| | || || || ||||||||||||| Sbjct 32179 CCTCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCATGC 32129 >seq4062 Length=67394 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 94795 CAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGT--TGGAA 94852 || ||||| ||| | || || ||||| || | ||| || || | ||||| || | Sbjct 48376 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCG--AAAGTGTCCTGCCA 48319 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || ||| | ||||| | || ||||| ||||| || || ||||| || Sbjct 48318 TCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATTCCTTCCTTA 48259 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| ||| ||||||| | || || || | ||||| Sbjct 48258 TCTTGGATCTTGGCCTTGACATGTTCGATGGTGTCAGAAGGCTCCACCTCGAGGGTGATA 48199 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || ||||| |||||||||||| Sbjct 48198 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 48163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447905479044240