Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq223 104 1e-17 seq25848 100 1e-16 >seq223 Length=511576 Score = 104 bits (114), Expect = 1e-17 Identities = 228/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 11164 GCCGCCGAGCAGTTGCATGTTGCCGTTGATGTCGACCACTACCTCGGTGCTGTAGTGGTC 11223 ||||||||||| |||||| ||||| | || || || || |||||| |||| | || Sbjct 459543 GCCGCCGAGCATCTGCATGGTGCCGCCCACGTTAACGACGACTTCGGTGGTGTATTTTTC 459602 Query 11224 CTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGA 11283 ||| |||| | ||| || ||||| | || |||||||||||||||||| || Sbjct 459603 AACGCCAGCCTGATCGGTCCATTTACGGGTTTGCAGTGCGCCTTCGATGTAGACCTGAGA 459662 Query 11284 GCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTG 11343 || || |||||||| |||||| ||| || | ||| || | ||| || ||||| Sbjct 459663 ACCTTTCTTCAGGTATTCGCCTGCGACTTCTGCTAATTTGCCGAACAACACCACACGGTG 459722 Query 11344 CCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTGGC 11403 ||| || || || | ||||| |||||| ||||| |||||| || || || Sbjct 459723 CCATTCCGTTTTTTCTTTCTGCTCGCCGGTGGCTTTGTCACGCCAGCTCTCAGACGTTGC 459782 Query 11404 CAGACTGAGGGAGGTGACCGCCTTTCCGCCCGGGGTAG--ATCTTGCG----TCTGGATC 11457 |||| ||| | || ||||| ||||| | ||| || | ||| || || || Sbjct 459783 CAGAGTGATGTTGGCAACCGC---GCCGCC---GTTAGGCATGTAGCGGACTTCCGGGTC 459836 Query 11458 CTGGCCCAGATGGCCGACCAGGATTACCTTGTTCACTCC 11496 || ||||||| ||||| || || || ||||| || || Sbjct 459837 TTGTCCCAGATTACCGACGAGAATAACTTTGTTTACGCC 459875 >seq25848 Length=116905 Score = 100 bits (110), Expect = 1e-16 Identities = 168/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 11164 GCCGCCGAGCAGTTGCATGTTGCCGTTGATGTCGACCACTACCTCGGTGCTGTAGTGGTC 11223 || ||| |||| ||||| ||||||| | |||| | | || ||| |||| |||| Sbjct 108324 GCTGCCCAGCATCTGCATCGTGCCGTTTGCCTTGACCGCAATTTCCGTGGTGTAACGGTC 108265 Query 11224 CTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGA 11283 || | | ||||||| |||||||| | || ||||||||||||||| | | Sbjct 108264 GATACCCTGCGCATCCTGCCATTTGCGGGTCTGCAGCTGGCCTTCGATGTAGACTTTTGC 108205 Query 11284 GCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTG 11343 |||||| |||||||| | || |||||||||||| || || | || || ||||| Sbjct 108204 GCCCTTGGTCAGGTATTCACCGGCAATTTCGGCCAGCTTTCCGAACACGACCACGCGGTG 108145 Query 11344 CCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTGGC 11403 ||||||||| || |||||| |||||| ||||| |||| ||||| ||||| Sbjct 108144 CCACTCGGTTTTTTCGCGCTGCTCGCCGGTGGCTTTGTCACGCCAGTTTTCGGACGTGGC 108085 Query 11404 CAG 11406 ||| Sbjct 108084 CAG 108082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208324287023944