Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_006552.1
Length=65195
Score E
Sequences producing significant alignments: (Bits) Value
seq223 104 1e-17
seq25848 100 1e-16
>seq223
Length=511576
Score = 104 bits (114), Expect = 1e-17
Identities = 228/339 (67%), Gaps = 12/339 (4%)
Strand=Plus/Plus
Query 11164 GCCGCCGAGCAGTTGCATGTTGCCGTTGATGTCGACCACTACCTCGGTGCTGTAGTGGTC 11223
||||||||||| |||||| ||||| | || || || || |||||| |||| | ||
Sbjct 459543 GCCGCCGAGCATCTGCATGGTGCCGCCCACGTTAACGACGACTTCGGTGGTGTATTTTTC 459602
Query 11224 CTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGA 11283
||| |||| | ||| || ||||| | || |||||||||||||||||| ||
Sbjct 459603 AACGCCAGCCTGATCGGTCCATTTACGGGTTTGCAGTGCGCCTTCGATGTAGACCTGAGA 459662
Query 11284 GCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTG 11343
|| || |||||||| |||||| ||| || | ||| || | ||| || |||||
Sbjct 459663 ACCTTTCTTCAGGTATTCGCCTGCGACTTCTGCTAATTTGCCGAACAACACCACACGGTG 459722
Query 11344 CCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTGGC 11403
||| || || || | ||||| |||||| ||||| |||||| || || ||
Sbjct 459723 CCATTCCGTTTTTTCTTTCTGCTCGCCGGTGGCTTTGTCACGCCAGCTCTCAGACGTTGC 459782
Query 11404 CAGACTGAGGGAGGTGACCGCCTTTCCGCCCGGGGTAG--ATCTTGCG----TCTGGATC 11457
|||| ||| | || ||||| ||||| | ||| || | ||| || || ||
Sbjct 459783 CAGAGTGATGTTGGCAACCGC---GCCGCC---GTTAGGCATGTAGCGGACTTCCGGGTC 459836
Query 11458 CTGGCCCAGATGGCCGACCAGGATTACCTTGTTCACTCC 11496
|| ||||||| ||||| || || || ||||| || ||
Sbjct 459837 TTGTCCCAGATTACCGACGAGAATAACTTTGTTTACGCC 459875
>seq25848
Length=116905
Score = 100 bits (110), Expect = 1e-16
Identities = 168/243 (69%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 11164 GCCGCCGAGCAGTTGCATGTTGCCGTTGATGTCGACCACTACCTCGGTGCTGTAGTGGTC 11223
|| ||| |||| ||||| ||||||| | |||| | | || ||| |||| ||||
Sbjct 108324 GCTGCCCAGCATCTGCATCGTGCCGTTTGCCTTGACCGCAATTTCCGTGGTGTAACGGTC 108265
Query 11224 CTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGA 11283
|| | | ||||||| |||||||| | || ||||||||||||||| | |
Sbjct 108264 GATACCCTGCGCATCCTGCCATTTGCGGGTCTGCAGCTGGCCTTCGATGTAGACTTTTGC 108205
Query 11284 GCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTG 11343
|||||| |||||||| | || |||||||||||| || || | || || |||||
Sbjct 108204 GCCCTTGGTCAGGTATTCACCGGCAATTTCGGCCAGCTTTCCGAACACGACCACGCGGTG 108145
Query 11344 CCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTGGC 11403
||||||||| || |||||| |||||| ||||| |||| ||||| |||||
Sbjct 108144 CCACTCGGTTTTTTCGCGCTGCTCGCCGGTGGCTTTGTCACGCCAGTTTTCGGACGTGGC 108085
Query 11404 CAG 11406
|||
Sbjct 108084 CAG 108082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 208324287023944
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |