Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_006645.1 Length=21388 Score E Sequences producing significant alignments: (Bits) Value seq1691 120 4e-23 seq459 109 7e-20 seq9008 105 9e-19 seq3334 104 3e-18 seq800 100 4e-17 seq54811 98.7 1e-16 seq14984 98.7 1e-16 seq28799 93.3 6e-15 seq13867 93.3 6e-15 seq1100 93.3 6e-15 seq18177 89.7 7e-14 seq26942 87.8 2e-13 seq6516 87.8 2e-13 seq40 87.8 2e-13 >seq1691 Length=104654 Score = 120 bits (132), Expect = 4e-23 Identities = 164/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 6149 AGGCCTTATTACCCTACCGTAGTAAAATAAGACCTATTCGTAAGGTTTTTGAAAAAATTT 6208 ||||||| || |||||| ||||| |||||| |||| ||||||||| |||| ||| Sbjct 30948 AGGCCTTTTTGTCCTACCATAGTATAATAAGGCCTACAGACAAGGTTTTTAAAAATGTTT 31007 Query 6209 AATTTTGTGTTTGTTTATGGTGAAAATTACCATTACTCCATTATAGTTTATGGCTAGTGT 6268 | |||| |||||||||| || ||| | | ||| | | ||||||||| | | || Sbjct 31008 AGTTTTATGTTTGTTTACGGCAAAAGTGGCAATTTTTTGTTCATAGTTTATAGTAACTGA 31067 Query 6269 ATTGATATAAA-AATTAATGATACATTTCAATGATT-GAATGTAATATTTTCGATTTTAT 6326 || ||| | ||||||| |||| || ||||| | || || |||| ||||||| Sbjct 31068 TCTG-TATGATTAATTAATATTACAATTTGTTGATTCGGATATATGGTTTTT-ATTTTAT 31125 Query 6327 TCAAAATCTCCCTTAGCTAGGCCTTATTACCCGCCAGTACCTTA 6370 | ||||||| ||||| ||||||||||||||||| | ||||||| Sbjct 31126 TTCAAATCTCTCTTAGGTAGGCCTTATTACCCGCAACTACCTTA 31169 >seq459 Length=169091 Score = 109 bits (120), Expect = 7e-20 Identities = 176/246 (72%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 6127 ATTTTCAGTATGCTTAACCCGCAGGCCTTATTACCCTACCGTAGTAAAATAAGACCTATT 6186 ||||| ||| | | ||| | ||||||||||| ||||| ||||| |||||| |||| Sbjct 143867 ATTTTGAGTGT--TAAACTCTTAGGCCTTATTATCCTACTATAGTATAATAAGGCCTAAA 143924 Query 6187 CGTAAGGTTTTTGAAAAAATTTAATTTTGTGTTTGTTTATGGTGAAAATTACCATTACTC 6246 |||| |||| |||| |||||||||| ||||| |||| || | | | | || | Sbjct 143925 GACAAGGCTTTTTAAAACATTTAATTTTATGTTTATTTACGGCAATAGTGGC--TTTTTT 143982 Query 6247 CATTATAGTTTATGGCTAGTG-TATTGATATAAAAATTAATGATACATTTCAATGATT-G 6304 | ||| ||||| | | || | || |||| ||||||| |||| || ||||| | Sbjct 143983 GTTCATATTTTATAGTAATTGATCTTTATAT-TTAATTAATATTACAATTTGTTGATTCG 144041 Query 6305 AATGTAATATTTTCGATTTTATTCAAAATCTCCCTTAGCTAGGCCTTATTACCCGCCAGT 6364 || ||| ||| |||||||| ||||||||||||| ||||| ||||||||||| | Sbjct 144042 GAT-ACATAGTTTTCATTTTATTTCAAATCTCCCTTAGGTAGGCGTTATTACCCGCACCT 144100 Query 6365 ACCTTA 6370 |||||| Sbjct 144101 ACCTTA 144106 >seq9008 Length=64931 Score = 105 bits (116), Expect = 9e-19 Identities = 163/227 (72%), Gaps = 13/227 (6%) Strand=Plus/Minus Query 6149 AGGCCTTATTACCCTACCGTAGTAAAATAAGACCTATTCGTAAGGTTTTTGAAAAAATTT 6208 ||||||||||| |||||| ||||| |||||| |||| ||||||||| | ||| Sbjct 37533 AGGCCTTATTATCCTACCATAGTATAATAAGGCCTAAAGACAAGGTTTTTAACGGCGTTT 37474 Query 6209 AATTTTGTGTTTGTTTATGGTGAAAATTACCATTACTCCATTATAGTTTATGGCTAGTGT 6268 | ||||||||||||||| || ||| | ||||| | ||| ||||| | || Sbjct 37473 A-TTTTGTGTTTGTTTACCGTAAAAGTGGCCATTTTGTGCTCATATTTTATAG-TA---- 37420 Query 6269 ATTGATATAAA---AATTAATGATACATTTCAATGATTGA---ATGTA-ATATTTTCGAT 6321 |||||| | ||||||| |||| || ||||| | ||||| ||| ||| || Sbjct 37419 ATTGATCTGTGTTTAATTAATATTACAATTTGTTGATTCAGATATGTACATAGTTTTTAT 37360 Query 6322 TTTATTCAAAATCTCCCTTAGCTAGGCCTTATTACCCGCCAGTACCT 6368 |||||| ||||||| ||||| ||||||||||||||||| ||||| Sbjct 37359 TTTATTTCAAATCTCTCTTAGGTAGGCCTTATTACCCGCACCTACCT 37313 >seq3334 Length=79645 Score = 104 bits (114), Expect = 3e-18 Identities = 161/224 (72%), Gaps = 7/224 (3%) Strand=Plus/Plus Query 6149 AGGCCTTATTACCCTACCGTAGTAAAATAAGACCTATTCGTAAGGTTTTTGAAAAAATTT 6208 ||||||||||| |||||||||||| |||| |||| |||||||||| | || ||| Sbjct 18120 AGGCCTTATTATCCTACCGTAGTA---TAAGGCCTAAAGATAAGGTTTTTAACAACGTTT 18176 Query 6209 AATTTTGTGTTTGTTTATGGTGAAAATTACCATTACTCCATTATAGTTTATGGCTAGTGT 6268 |||||| |||||||||| | ||| | ||||| | | ||| ||||| | | || Sbjct 18177 AATTTTATGTTTGTTTACCGCAAAAGTGGCCATTTTTTGTTCATATTTTATAGTAATTGA 18236 Query 6269 ATTGATATAAAAA-TTAATGATACATTTCAATGATT-GAATGTAATATTTTCGATTTTAT 6326 || ||| | | ||||| |||| || ||||| | || | |||| || || Sbjct 18237 TCTG-TATGATTAGTTAATATTACAATTTGTTGATTCGGATACATGGTTTTTTTTTAAAT 18295 Query 6327 TCAAAATCTCCCTTAGCTAGGCCTTATTACCCGCCAGTACCTTA 6370 ||||| |||||||||| ||||||||||||||||| ||||||| Sbjct 18296 TCAAA-TCTCCCTTAGGTAGGCCTTATTACCCGCACCTACCTTA 18338 >seq800 Length=120797 Score = 100 bits (110), Expect = 4e-17 Identities = 156/220 (71%), Gaps = 11/220 (5%) Strand=Plus/Plus Query 6149 AGGCCTTATTACCCTACCGTAGTAAAATAAGACCTATTCGTAAGGTTTTTGAAAAAATTT 6208 |||||||| || |||||| ||||| |||||| |||| ||||||||| |||| ||| Sbjct 30053 AGGCCTTAATATCCTACCATAGTATAATAAGGCCTAAAGACAAGGTTTTTAAAAACGTTT 30112 Query 6209 AATTTTGTGTTTGTTTATGGTGAAAATTACCATTACTCCATTATAGTTTATGGCTAGTGT 6268 |||||||||||||||| || ||| | || ||| || | | ||||| | ||| Sbjct 30113 AATTTTGTGTTTGTTTGCGGCAAAAGTGACAATT-----TTTTTCATATATGGAT-CTGT 30166 Query 6269 ATTGATATAAAAATTAATGATACATTTCAATGATTGAATGTAATATTTTCGATTTTATTC 6328 | || | |||| || |||| || ||||| | ||| ||| |||||||| Sbjct 30167 A-TGTT----TAATTGATATTACAATTTGTTGATTCGAACACATAGTTTTTATTTTATTT 30221 Query 6329 AAAATCTCCCTTAGCTAGGCCTTATTACCCGCCAGTACCT 6368 |||||||| |||| |||||||| |||||||| ||||| Sbjct 30222 CAAATCTCCATTAGGTAGGCCTTTTTACCCGCACCTACCT 30261 >seq54811 Length=3919 Score = 98.7 bits (108), Expect = 1e-16 Identities = 160/224 (71%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 6149 AGGCCTTATTACCCTACCGTAGTAAAATAAGACCTATTCGTAAGGTTTTTGAAAAAATTT 6208 ||| ||||||| || ||| ||||| |||||| |||| ||||||||| |||| ||| Sbjct 2236 AGGACTTATTATCCAACCATAGTATAATAAGGCCTAAAGACAAGGTTTTTAAAAACGTTT 2177 Query 6209 AATTTTGTGTTTGTTTATGGTGAAAATTACCATTACTCCATTATAGTTTATGGCTAGTGT 6268 |||||| |||||||||||| ||| | ||||| | | ||| ||||| | || Sbjct 2176 AATTTTACGTTTGTTTATGGCAAAAGTGGCCATT-TTTGTTCATATTTTATATTAATTGA 2118 Query 6269 ATTGATAT-AAAAATTAATGATACATTTCAATGATT-GAATGTAATATTTTCGATTTTAT 6326 || ||| ||||||| |||| || ||||| | || ||| ||| ||||||| Sbjct 2117 CCTG-TATGTTTAATTAATATTACAATTTGTTGATTCGGAT-ACATAGTTTATATTTTAT 2060 Query 6327 TCAAAATCTCCCTTAGCTAGGCCTTATTACCCGCCAGTACCTTA 6370 | | ||||||||||| ||||| |||||| |||| ||||||| Sbjct 2059 TTCATATCTCCCTTAGGTAGGCTTTATTATCCGCACCTACCTTA 2016 >seq14984 Length=21134 Score = 98.7 bits (108), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 2433 GCGTCACGTAGAAAGAGACAAACATATATATCTGTAGGATTGAACGTACAAAAGAATGAG 2492 ||| ||| || |||||| |||||| | | |||| | ||||| | | | | | || ||||| Sbjct 4513 GCGACAC-TAAAAAGAGTCAAACACAAAAATCTATTGGATTTAGCCTGCCAGAGCATGAG 4455 Query 2493 ATGGAATACATTACACAGCGTATATTATTCTCGGGGTCTCCTCTTTGTTCGATGCTTCGT 2552 || ||||||||||||||| || | |||| || |||||||||||||| || |||||||| Sbjct 4454 ATAGAATACATTACACAGTGTTTCCTATTATCTCGGTCTCCTCTTTGTGCGGTGCTTCGT 4395 Query 2553 A 2553 | Sbjct 4394 A 4394 >seq28799 Length=9344 Score = 93.3 bits (102), Expect = 6e-15 Identities = 161/228 (71%), Gaps = 12/228 (5%) Strand=Plus/Plus Query 6149 AGGCCTTATTACCCTACCGTAGTAAAATAAGACCTATTCGTAAGGTTTTTGAAAAAATTT 6208 ||||||||||| ||| || ||||| |||| | |||| |||||||||| ||||| || Sbjct 1360 AGGCCTTATTATCCTGCCATAGTATAATAGG-CCTAAAGATAAGGTTTTTAAAAAACGTT 1418 Query 6209 AATTTTGTGTTTGTTTATGGTGAAAATTACCATTACTCCATTATAGTTTATGGCTAGTGT 6268 | ||| ||| |||| | || ||| | ||||| | | ||| ||||| | || | Sbjct 1419 TAATTTATGTGTGTTGACGGCAAAAGTGGCCATTTTTTGTTCATATTTTATAG-TAAT-- 1475 Query 6269 ATTGATATAAA-----AATTAATGATACATTTCAATGATT-GAATGTAATATTTTCGATT 6322 ||||| | | ||||||| || | || | ||||| | | || | ||| ||| Sbjct 1476 -TTGATCTGCATGTTTAATTAATATTAAAATTTATTGATTCGGACACAA-AGTTTATATT 1533 Query 6323 TTATTCAAAATCTCCCTTAGCTAGGCCTTATTACCCGCCAGTACCTTA 6370 ||||| |||||||||||| ||||||||||||||||| ||||||| Sbjct 1534 TTATTTCAAATCTCCCTTAAGTAGGCCTTATTACCCGCACCTACCTTA 1581 >seq13867 Length=31017 Score = 93.3 bits (102), Expect = 6e-15 Identities = 97/126 (77%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 2433 GCGTCACGTAGAAAGAGACAAACATATATATCTGTAGGATTGAACGTACAAAAGAATGAG 2492 ||| ||| || ||||||||||||| || || | || |||| | | | | | ||||||| Sbjct 13876 GCGACAC-TAAAAAGAGACAAACACTTACATTTATAAGATTTAGCCTGCGACGGAATGAG 13818 Query 2493 ATGGAATACATTACACAGCGTATATTATTCTCGGGGTCTCCTCTTTGTTCGATGCTTCGT 2552 || |||||||||| |||| || | ||| || |||||||||||||| || |||||||| Sbjct 13817 ATAGAATACATTATACAGTGTTTCCCATTATCTCGGTCTCCTCTTTGTGCGGTGCTTCGT 13758 Query 2553 AGTATC 2558 || ||| Sbjct 13757 AGCATC 13752 >seq1100 Length=131892 Score = 93.3 bits (102), Expect = 6e-15 Identities = 151/212 (71%), Gaps = 8/212 (4%) Strand=Plus/Minus Query 6163 TACCGTAGTAAAATAAGACCTATTCGTAAGGTTTTTGAAAAAATTTAATTTTGTGTTTGT 6222 |||| ||||| |||||| |||| |||| |||| | || ||||||||| ||||| | Sbjct 92620 TACCATAGTATAATAAGGCCTAAAGACAAGGATTTTAACAATGTTTAATTTTATGTTTTT 92561 Query 6223 TTATGGTGAAAATTACCATTACTCCATTATAGTTTATGGCTAGTGTATTGATATAAA-AA 6281 ||| | ||||| ||||| | ||| ||||| | | || || |||| || Sbjct 92560 TTACCGCAAAAATGGCCATTTTTTGTGCATATTTTATAGTAATTGATCTG-TATATTTAA 92502 Query 6282 TTAATGATACATTTCAATGATTGAATGTAATATTTTCGATTTTATTCAAAATCTCCCTTA 6341 ||||| |||| || || |||| | ||| ||| |||||||| |||||| ||||| Sbjct 92501 TTAATATTACAATT---TG-TTGATTCGGATACTTT--ATTTTATTTCAAATCTTCCTTA 92448 Query 6342 GCTAGGCCTTATTACCCGCCAGTACCTTATAT 6373 | ||||||||||||||||| |||||||||| Sbjct 92447 GGTAGGCCTTATTACCCGCACCTACCTTATAT 92416 >seq18177 Length=15360 Score = 89.7 bits (98), Expect = 7e-14 Identities = 95/124 (77%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 2431 AGGCGTCACGTAGAAAGAGACAAACATATATATCTGTAGGATTGAACGTACAAAAGAATG 2490 ||||| ||| || ||| ||||||||||||| ||| ||||||| | | | | |||||| Sbjct 8302 AGGCGACAC-TAAAAAAAGACAAACATATACCTCTATAGGATTTAGCCTGTGAGAGAATG 8360 Query 2491 AGATGGAATACATTACACAGCGTATATTATTCTCGGGGTCTCCTCTTTGTTCGATGCTTC 2550 | || ||||||||||||||| || | |||| || ||| || ||||||| | ||| || Sbjct 8361 ATATAGAATACATTACACAGTGTTTCCTATTATCTCGGTATCATCTTTGTGCTGTGCATC 8420 Query 2551 GTAG 2554 |||| Sbjct 8421 GTAG 8424 >seq26942 Length=18700 Score = 87.8 bits (96), Expect = 2e-13 Identities = 94/122 (77%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 2433 GCGTCACGTAGAAAGAGACAAACATATATATCTGTAGGATTGAACGTACAAAAGAATGAG 2492 ||| ||| || ||||||||||| | ||| |||| ||||||| | | | | | ||||| || Sbjct 5820 GCGACAC-TAAAAAGAGACAAATACATACATCTATAGGATTTAGCCTGCGAGAGAATAAG 5762 Query 2493 ATGGAATACATTACACAGCGTATATTATTCTCGGGGTCTCCTCTTTGTTCGATGCTTCGT 2552 || ||||||||| |||| || | |||| || | |||||||||||| |||||||| | Sbjct 5761 ATAGAATACATTGTACAGTGTTTCCTATTATCTCGATCTCCTCTTTGT--GATGCTTCAT 5704 Query 2553 AG 2554 || Sbjct 5703 AG 5702 >seq6516 Length=35796 Score = 87.8 bits (96), Expect = 2e-13 Identities = 91/119 (76%), Gaps = 9/119 (8%) Strand=Plus/Plus Query 2441 TAGAAAGAGACAAACATATATATCTGTAGGATTGAACGT-----ACAAAAGAATGAGATG 2495 || ||||||||| |||| || || |||||| | | | ||| |||||||||| Sbjct 22111 TAAAAAGAGACATACATTTACAT----AGGATTTAGCCTGAGATACATTAGAATGAGATA 22166 Query 2496 GAATACATTACACAGCGTATATTATTCTCGGGGTCTCCTCTTTGTTCGATGCTTCGTAG 2554 |||||||||| |||| |||| |||| || |||||||||||||| || |||||||||| Sbjct 22167 GAATACATTATACAGTGTATCCTATTATCCCGGTCTCCTCTTTGTGCGGTGCTTCGTAG 22225 >seq40 Length=272405 Score = 87.8 bits (96), Expect = 2e-13 Identities = 159/228 (70%), Gaps = 21/228 (9%) Strand=Plus/Minus Query 6149 AGGCCTTATTACCCTACCGTAGTAAAATAAGACCTATTCGTAAGGTTTTTGAAAAAATTT 6208 ||||||||||| |||||| ||| | ||||| ||||||||| |||| ||| Sbjct 245771 AGGCCTTATTATCCTACCATAGGCCTA-AAGAC--------AAGGTTTTTAAAAACGTTT 245721 Query 6209 AATTTTGTGTTTGTTTATGGTGAAAATTACCATTACTCCATTATAGTTTATGGCTAGTGT 6268 |||||| |||||||||||| ||| | ||||| | | ||| |||| |||| Sbjct 245720 AATTTTACGTTTGTTTATGGCAAAAGTGGCCATTTTTTGTTCATATTTTA----TAGT-A 245666 Query 6269 ATTGATATAAA-----AATTAATGATACATTTCAATGATT-GAATGTAATATTTTCGATT 6322 |||||| | | ||||||| || | || |||| | || ||| ||| ||| Sbjct 245665 ATTGATCTGTATGTTTAATTAATATTATAATTTGTCGATTCGGAT-ACATAGTTTTTATT 245607 Query 6323 TTATTCAAAATCTCCCTTAGCTAGGCCTTATTACCCGCCAGTACCTTA 6370 ||||| ||||||||||||| ||||| ||||||||||| ||||||| Sbjct 245606 TTATTTCAAATCTCCCTTAGGTAGGCTTTATTACCCGCACCTACCTTA 245559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 68268822034842