Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq18006 129 1e-25 >seq18006 Length=16927 Score = 129 bits (142), Expect = 1e-25 Identities = 275/404 (68%), Gaps = 10/404 (2%) Strand=Plus/Plus Query 5318 CCACATTTTC-GTCTTAAGTGTTCTATTGAAACGTTCACATATGGATGCTTTGAGATTGC 5376 |||||||| | || |||| |||||||||||||||||| ||| || ||||| | |||| Sbjct 16289 CCACATTTCCTGTTTTAA-TGTTCTATTGAAACGTTCTACTATAGAAGCTTTCA--TTGC 16345 Query 5377 --TGAATGTTGAATACAGATTTATCTTGTGCTGCTTCATCAGATCTTTGAATTCTTTGTT 5434 || | || ||||| |||| || || | ||||| | || | || | | || Sbjct 16346 ACTGTAAGTAGAATAATGATTAATTTTATAAGTTTTCATTAAATTCTGAAAATGAATATT 16405 Query 5435 GTAAAACTCTTTACCCTGATCAACATGGAGATTCTTAGGGATACGACCTTGCTGAAGTAC 5494 | || ||||| || ||||| || | ||| |||| || | |||||| | | Sbjct 16406 AAAGAATTCTTTTCCTTGATCGGTTTGTAAATTTGTAGGTATCCTCTCTTGCTTTAAAAT 16465 Query 5495 AGACTTCATAGCACTTGTGACATCTACACCACTTTTAGACTTAATTGGAACTGCCCAGGC 5554 ||||||||||| || | |||| || | |||||| ||||| | | |||||| || Sbjct 16466 TAACTTCATAGCATTTATTACATTATTACTAGATTTAGATTTAATCGATATTGCCCAAGC 16525 Query 5555 ATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATC--CTTTATTGACTGTT 5612 |||||| || |||| ||| || | ||| | || || || | | || | ||||| | Sbjct 16526 ATATTTAGAGAATACATCAATAACTGTTAACAAGTATTTTTGGCCACTGTTTTGAC--GT 16583 Query 5613 GCATATGGAATCATCTCAACCAAGTCAGCTTGCCAAGTCTCATCGAGACCTCGGATATCA 5672 ||||| || |||||||| || |||||||| |||||||| ||||| | || || | | Sbjct 16584 GCATAAGGTATCATCTCTACTAAGTCAGCCTGCCAAGTATCATCCAATCCACGTTGAATA 16643 Query 5673 ACATGACGACGTTTATAGTTTCTACGAGCTGGTTTGTGAAGCTC 5716 || | | || ||||||| |||| || ||||| || ||||| Sbjct 16644 ACCCGCCTTCGAGGATAGTTTTTACGTGCAGGTTTATGGAGCTC 16687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97894315358036