Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_006949.1
Length=46900
Score E
Sequences producing significant alignments: (Bits) Value
seq725 217 4e-52
seq223 127 6e-25
seq25848 87.8 5e-13
>seq725
Length=236385
Score = 217 bits (240), Expect = 4e-52
Identities = 307/431 (71%), Gaps = 3/431 (1%)
Strand=Plus/Plus
Query 27245 GATGGCGGAGTAAATCTTCGTTTCGGTAATATCTTTCAACTGAATCCCTGCAAAATGCTG 27304
||| || | ||| || || | |||||||||||| ||||||| | |||| ||||||||
Sbjct 174199 GATCGCCGTGTAGATTTTGGCTTCGGTAATATCCTTCAACTTCACCCCTTCAAAATGCAT 174258
Query 27305 GAGCCAGAATCCTATCCGGCTTTTGTCATCGTCCAGCGACTTCTTATGCGCCTTCTCCTC 27364
||||||||||| ||||||||||||||||| ||||| || ||||| | ||| || ||
Sbjct 174259 CAGCCAGAATCCCATCCGGCTTTTGTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTC 174318
Query 27365 TAACCACCTGACACAGGCTTCCTCAAAAGTCATGTCAGGCGTCTCGCCTAATTTACTTAC 27424
|||||||| | |||||| || |||||||| | |||||| ||||| | ||
Sbjct 174319 CAACCACCTTAAACAGGCCTCTTCAAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTAT 174378
Query 27425 CCTCCATGCTTCGGCCTTCAGCCTGTCATGAAGCTCCGTGGCCTGCCTTTTGTCCTTTGT 27484
| ||| || | || |||| || |||||| |||| ||| |||| | |||
Sbjct 174379 TCGCCAGAGCTCTGATTTTCTTTTGTCGTGCAGCTCCTGTGCCTCCCTCTTGTTCGCTGT 174438
Query 27485 CCCAAGAGACTGCTTAAATCTTTTGCCGTCCGGCAATGTGAAACTGGCGTACCAGGTTTC 27544
||||||||| | |||| ||||| ||| |||||| | ||| || ||||||||| | |
Sbjct 174439 CCCAAGAGATTCTTTAAGTCTTTGCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTT 174498
Query 27545 ACCTCTGCGGAATAGTGACATTTCAGTTCCTCTGTTATGCCATCACCCGCGCTCACGGCG 27604
|||||| ||||| | ||||| | |||||| ||| |||||| | |||||||||
Sbjct 174499 ACCTCTACGGAAGATAGACATGTTTTTTCCTCGAGCATG---TCACCCTCACTCACGGCG 174555
Query 27605 ACAGTATGCATCGGAGACTGAAGAGCCGCAATGCAGGCTTGTCGTGTAGTGAGGTATGGG 27664
||||| | ||||| | || || ||||| || ||||| || || || ||| |||
Sbjct 174556 ACAGTGTTGATCGGTTTATTCAGTGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGG 174615
Query 27665 GATTTAGGTTT 27675
|| || |||||
Sbjct 174616 GACTTTGGTTT 174626
Score = 154 bits (170), Expect = 4e-33
Identities = 151/195 (77%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 26435 GTGGGACATATTTGGGACAGAAGTACCAAAAATCGAGTCAATTTGTCGAGCATGTTCAGT 26494
|||||||| ||||||||||||| |||||||| | ||| || || || || || ||
Sbjct 175480 GTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTCCGT 175539
Query 26495 CAGGTGATTTGGTGCCAGATGAGCATATCTGCGAACCATTTCGATAGACTCCCAGCCACC 26554
| ||||| || |||||||| || |||| || ||||| ||||| ||||||||||| ||
Sbjct 175540 TAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCCGCC 175599
Query 26555 CATTTCCTGCAATACCGAAATCGGAACGCCAGCCTGAACTAACCAACTTGCCCACGTGTG 26614
||||||||| | || || | ||| || || ||||||| | ||| |||||||| |||||
Sbjct 175600 CATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGTGTG 175659
Query 26615 CCTCAGGTCATGAAA 26629
|||||||| |||||
Sbjct 175660 TCTCAGGTCGTGAAA 175674
>seq223
Length=511576
Score = 127 bits (140), Expect = 6e-25
Identities = 235/345 (68%), Gaps = 0/345 (0%)
Strand=Plus/Plus
Query 32899 GCCACCAAGCATTTGCATGGTTCCACTAACGCCAACGATGACTTCGGTAGTGAACCGATT 32958
||| || ||||| |||||||| || | ||| ||||| ||||||||| ||| | |
Sbjct 459543 GCCGCCGAGCATCTGCATGGTGCCGCCCACGTTAACGACGACTTCGGTGGTGTATTTTTC 459602
Query 32959 CTGTCCACTTTGGTCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGA 33018
||| || || |||||| | || ||| | |||||| | || |||| |||
Sbjct 459603 AACGCCAGCCTGATCGGTCCATTTACGGGTTTGCAGTGCGCCTTCGATGTAGACCTGAGA 459662
Query 33019 GCCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGGTG 33078
||||| ||| || |||| || | |||||| | ||| ||| || ||||||||||||
Sbjct 459663 ACCTTTCTTCAGGTATTCGCCTGCGACTTCTGCTAATTTGCCGAACAACACCACACGGTG 459722
Query 33079 CCACTCCGTCTGCTCCTTTTGCTCGCCAGTATTTTTATCTCGCCATTGTTCTGACGTAGC 33138
||| ||||| | || || |||||||| || ||| || ||||| || ||||| ||
Sbjct 459723 CCATTCCGTTTTTTCTTTCTGCTCGCCGGTGGCTTTGTCACGCCAGCTCTCAGACGTTGC 459782
Query 33139 TATTGTCAGGTTAGCGAACGCTGTTCCTGATGGTGAGTATCTAACTTCCGGGTCTTGTCC 33198
| || | ||| || | ||| || || ||| | |||||||||||||||||
Sbjct 459783 CAGAGTGATGTTGGCAACCGCGCCGCCGTTAGGCATGTAGCGGACTTCCGGGTCTTGTCC 459842
Query 33199 AACCCGACAAAGGATAATCACCTTATTTACGCCTCTGCTTGCCAT 33243
| || | || ||| || || |||||||||||||| |||||
Sbjct 459843 CAGATTACCGACGAGAATAACTTTGTTTACGCCTCTGCTGGCCAT 459887
>seq25848
Length=116905
Score = 87.8 bits (96), Expect = 5e-13
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 32972 TCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAGCCTTTTCGCAGA 33031
||||||||||| | ||| ||| | |||||| | || || | | ||| || |||
Sbjct 108251 TCCTGCCATTTGCGGGTCTGCAGCTGGCCTTCGATGTAGACTTTTGCGCCCTTGGTCAGG 108192
Query 33032 TACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGGTGCCACTCCGTCTGC 33091
|| || | ||||||||| ||||| || ||| || ||||| ||||||||||| || |
Sbjct 108191 TATTCACCGGCAATTTCGGCCAGCTTTCCGAACACGACCACGCGGTGCCACTCGGTTTTT 108132
Query 33092 TCCTTTTGCTCGCCAGTATTTTTATCTCGCCATTGTTCTGACGTAGCTATTGTCAGGTTA 33151
|| |||||||| || ||| || ||||| | ||| ||||| || | |||||| |
Sbjct 108131 TCGCGCTGCTCGCCGGTGGCTTTGTCACGCCAGTTTTCGGACGTGGCCAGCGTCAGGCTC 108072
Query 33152 GCGAACGC 33159
|| | |||
Sbjct 108071 GCCACCGC 108064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 149835823441496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |