Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq725 217 4e-52 seq223 127 6e-25 seq25848 87.8 5e-13 >seq725 Length=236385 Score = 217 bits (240), Expect = 4e-52 Identities = 307/431 (71%), Gaps = 3/431 (1%) Strand=Plus/Plus Query 27245 GATGGCGGAGTAAATCTTCGTTTCGGTAATATCTTTCAACTGAATCCCTGCAAAATGCTG 27304 ||| || | ||| || || | |||||||||||| ||||||| | |||| |||||||| Sbjct 174199 GATCGCCGTGTAGATTTTGGCTTCGGTAATATCCTTCAACTTCACCCCTTCAAAATGCAT 174258 Query 27305 GAGCCAGAATCCTATCCGGCTTTTGTCATCGTCCAGCGACTTCTTATGCGCCTTCTCCTC 27364 ||||||||||| ||||||||||||||||| ||||| || ||||| | ||| || || Sbjct 174259 CAGCCAGAATCCCATCCGGCTTTTGTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTC 174318 Query 27365 TAACCACCTGACACAGGCTTCCTCAAAAGTCATGTCAGGCGTCTCGCCTAATTTACTTAC 27424 |||||||| | |||||| || |||||||| | |||||| ||||| | || Sbjct 174319 CAACCACCTTAAACAGGCCTCTTCAAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTAT 174378 Query 27425 CCTCCATGCTTCGGCCTTCAGCCTGTCATGAAGCTCCGTGGCCTGCCTTTTGTCCTTTGT 27484 | ||| || | || |||| || |||||| |||| ||| |||| | ||| Sbjct 174379 TCGCCAGAGCTCTGATTTTCTTTTGTCGTGCAGCTCCTGTGCCTCCCTCTTGTTCGCTGT 174438 Query 27485 CCCAAGAGACTGCTTAAATCTTTTGCCGTCCGGCAATGTGAAACTGGCGTACCAGGTTTC 27544 ||||||||| | |||| ||||| ||| |||||| | ||| || ||||||||| | | Sbjct 174439 CCCAAGAGATTCTTTAAGTCTTTGCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTT 174498 Query 27545 ACCTCTGCGGAATAGTGACATTTCAGTTCCTCTGTTATGCCATCACCCGCGCTCACGGCG 27604 |||||| ||||| | ||||| | |||||| ||| |||||| | ||||||||| Sbjct 174499 ACCTCTACGGAAGATAGACATGTTTTTTCCTCGAGCATG---TCACCCTCACTCACGGCG 174555 Query 27605 ACAGTATGCATCGGAGACTGAAGAGCCGCAATGCAGGCTTGTCGTGTAGTGAGGTATGGG 27664 ||||| | ||||| | || || ||||| || ||||| || || || ||| ||| Sbjct 174556 ACAGTGTTGATCGGTTTATTCAGTGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGG 174615 Query 27665 GATTTAGGTTT 27675 || || ||||| Sbjct 174616 GACTTTGGTTT 174626 Score = 154 bits (170), Expect = 4e-33 Identities = 151/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 26435 GTGGGACATATTTGGGACAGAAGTACCAAAAATCGAGTCAATTTGTCGAGCATGTTCAGT 26494 |||||||| ||||||||||||| |||||||| | ||| || || || || || || Sbjct 175480 GTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTCCGT 175539 Query 26495 CAGGTGATTTGGTGCCAGATGAGCATATCTGCGAACCATTTCGATAGACTCCCAGCCACC 26554 | ||||| || |||||||| || |||| || ||||| ||||| ||||||||||| || Sbjct 175540 TAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCCGCC 175599 Query 26555 CATTTCCTGCAATACCGAAATCGGAACGCCAGCCTGAACTAACCAACTTGCCCACGTGTG 26614 ||||||||| | || || | ||| || || ||||||| | ||| |||||||| ||||| Sbjct 175600 CATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGTGTG 175659 Query 26615 CCTCAGGTCATGAAA 26629 |||||||| ||||| Sbjct 175660 TCTCAGGTCGTGAAA 175674 >seq223 Length=511576 Score = 127 bits (140), Expect = 6e-25 Identities = 235/345 (68%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 32899 GCCACCAAGCATTTGCATGGTTCCACTAACGCCAACGATGACTTCGGTAGTGAACCGATT 32958 ||| || ||||| |||||||| || | ||| ||||| ||||||||| ||| | | Sbjct 459543 GCCGCCGAGCATCTGCATGGTGCCGCCCACGTTAACGACGACTTCGGTGGTGTATTTTTC 459602 Query 32959 CTGTCCACTTTGGTCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGA 33018 ||| || || |||||| | || ||| | |||||| | || |||| ||| Sbjct 459603 AACGCCAGCCTGATCGGTCCATTTACGGGTTTGCAGTGCGCCTTCGATGTAGACCTGAGA 459662 Query 33019 GCCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGGTG 33078 ||||| ||| || |||| || | |||||| | ||| ||| || |||||||||||| Sbjct 459663 ACCTTTCTTCAGGTATTCGCCTGCGACTTCTGCTAATTTGCCGAACAACACCACACGGTG 459722 Query 33079 CCACTCCGTCTGCTCCTTTTGCTCGCCAGTATTTTTATCTCGCCATTGTTCTGACGTAGC 33138 ||| ||||| | || || |||||||| || ||| || ||||| || ||||| || Sbjct 459723 CCATTCCGTTTTTTCTTTCTGCTCGCCGGTGGCTTTGTCACGCCAGCTCTCAGACGTTGC 459782 Query 33139 TATTGTCAGGTTAGCGAACGCTGTTCCTGATGGTGAGTATCTAACTTCCGGGTCTTGTCC 33198 | || | ||| || | ||| || || ||| | ||||||||||||||||| Sbjct 459783 CAGAGTGATGTTGGCAACCGCGCCGCCGTTAGGCATGTAGCGGACTTCCGGGTCTTGTCC 459842 Query 33199 AACCCGACAAAGGATAATCACCTTATTTACGCCTCTGCTTGCCAT 33243 | || | || ||| || || |||||||||||||| ||||| Sbjct 459843 CAGATTACCGACGAGAATAACTTTGTTTACGCCTCTGCTGGCCAT 459887 >seq25848 Length=116905 Score = 87.8 bits (96), Expect = 5e-13 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 32972 TCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAGCCTTTTCGCAGA 33031 ||||||||||| | ||| ||| | |||||| | || || | | ||| || ||| Sbjct 108251 TCCTGCCATTTGCGGGTCTGCAGCTGGCCTTCGATGTAGACTTTTGCGCCCTTGGTCAGG 108192 Query 33032 TACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGGTGCCACTCCGTCTGC 33091 || || | ||||||||| ||||| || ||| || ||||| ||||||||||| || | Sbjct 108191 TATTCACCGGCAATTTCGGCCAGCTTTCCGAACACGACCACGCGGTGCCACTCGGTTTTT 108132 Query 33092 TCCTTTTGCTCGCCAGTATTTTTATCTCGCCATTGTTCTGACGTAGCTATTGTCAGGTTA 33151 || |||||||| || ||| || ||||| | ||| ||||| || | |||||| | Sbjct 108131 TCGCGCTGCTCGCCGGTGGCTTTGTCACGCCAGTTTTCGGACGTGGCCAGCGTCAGGCTC 108072 Query 33152 GCGAACGC 33159 || | ||| Sbjct 108071 GCCACCGC 108064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149835823441496