Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq742 338 8e-88 seq6691 136 5e-27 >seq742 Length=196864 Score = 338 bits (374), Expect = 8e-88 Identities = 1174/1809 (65%), Gaps = 41/1809 (2%) Strand=Plus/Minus Query 62034 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 62093 || |||||||| || || | || | |||| || || || || ||| || || || Sbjct 48873 TAATACATTCCAGTCTTCAAGCCCATCTTCCAGCCATAGAAGTGGATAGAAGTGAGCTTT 48814 Query 62094 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 62153 || | || ||||| | || || || | || |||||||| || || |||||||| Sbjct 48813 CCGTAGTTGGGCTCTGCCACGTGTATGTTGAAGGACTGACTTTGGTCAATAAAGGCTCCT 48754 Query 62154 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGG--AATTTCCCAAATAGTTTTATAAA 62211 | ||| || ||||| || || | || |||||| | ||||||||||| || || || | Sbjct 48753 CGGTCGGCTGCCATCTTGATCA--GTATTTTGTTGGAAATTTCCCAAACTGTCTTGTAGA 48696 Query 62212 C-TCGCTTAATATCTTCTGGAAGGTTTGTA--TTCTGAATGGATCCACCATCTGCCATAA 62268 || || | ||| | | | | | || ||||||||||| | || || | Sbjct 48695 GATCTCTGATGTGCTTGGGTATTCTGTCCAGGTTTTGAATGGATCCGTTGTTGGCAATGA 48636 Query 62269 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62328 | ||| || || || || | ||| || | |||||| ||| | | || ||||| Sbjct 48635 TGAGATTTTTCATGTCGTCGTCCCACAAATCAGCCTCGGTCAAATCACGCAGTAGATGGT 48576 Query 62329 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62388 |||| || || || |||||||||||||| || || | ||||| || || || | | Sbjct 48575 GATTCACAACCTGGAATTCTCCAGACAAGACCCTTCTGGTGTAGATGTTGGAAGTGAAGG 48516 Query 62389 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62448 |||| | || || || ||||| ||||| || || || || || || ||||| ||||| | Sbjct 48515 GTTCAAAGGATTCGTTGTTTCCTAAAATCTGGGCGGTGGAGGCGGTAGGCATGGGTGCGA 48456 Query 62449 CCAATAAACTATTTC-TAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTC 62507 || | | | ||| | | |||| | | ||| ||| |||| | | |||| ||| Sbjct 48455 G-AAGCAGCGAGTTCCTGACTCCGTGTATCGCGATCTTAGCTTTCAAGGCAGCCCAGTTC 48397 Query 62508 CAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTA 62566 || | ||| | || ||| ||||| || || ||| | | | Sbjct 48396 CACAAATCTGTAGGCTTCTTGTCCCACATCTCATATTGAAGAATCCCTTTGCTGACAGGA 48337 Query 62567 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 62626 | ||||| || || ||||||| || |||||||| || || || ||||| || || | Sbjct 48336 C-ATCCTGGGTACGTCTCGTATGTACCCTCCTTCTCGGCCAGCTCGCAACTTGCTTCCAG 48278 Query 62627 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATC 62686 ||||||||||| | || || || || | | ||| ||| || |||| || || Sbjct 48277 AGCACCGTAATACAATGTCTCAAATATTTGTTGATTCAGAAGCTGGGCTTTTTCACTCTC 48218 Query 62687 AAATGGATAAT----TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGA 62742 ||| || ||| |||||| || | || || || | ||||| | |||||||||| Sbjct 48217 AAAAGGC-AATCTCATTAAGACAAAA---GCATCTGCCAGGCCTTGTATTCCAATACCGA 48162 Query 62743 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 62802 | || | || | | | || || || ||||||||| | ||| ||| | |||| || | Sbjct 48161 TGGGGCGGTGACGCATGTTCGATGTTCTAGCTTCTGGTACAGGGTAAAAGTTAACGTCGA 48102 Query 62803 TAATTTTATTGAGATTT---CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT 62859 ||||||| || | |||| ||||| | ||| || |||||| || ||| | Sbjct 48101 TAATTTTGTTCAAATTTTTAGTGACAGT---CTTGGTTACGATCTTCAGCTTTTCAAAGT 48045 Query 62860 CAAATCGCCCATCTAT-TACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCT 62918 | ||| | || ||| ||||||||| || | || | ||| |||| ||| || || ||| Sbjct 48044 CGAATACCTTAT-TATCTACAAACATATTGACAGCGATAGAGGCCAAATTGCAGACAGCT 47986 Query 62919 ACCTCA--TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAG 62976 || ||| || | | | |||| | ||| || ||||| || ||||| ||||| |||| Sbjct 47985 ACTTCATCTTTGGA--AGTGTATTCAACTATTTCTGTGCAGAGGTTACTGCACTTAATAG 47928 Query 62977 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAG 63036 |||| | ||||||||| || |||||| ||| ||||| ||||| || || ||| | || | Sbjct 47927 TTCCCAGATTTTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGTACAGCATGTAGGGGG 47868 Query 63037 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA-GACGACTCGAGCCTTTATTATA 63095 | || ||||| | |||||||| || || || |||| | | || | ||||| || | Sbjct 47867 TTCCCGTTTCTACTTGAGATTCGATGATGGCCATCCACAAAGTCT-GCGCCTTGATCTTC 47809 Query 63096 GATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAA 63155 || | | | ||| |||||| |||| |||| || || || |||||||| Sbjct 47808 TTCTTAGAACGACCTTCGGCTTCGTAGCGTGTGTACAGAGCCTCAAATTCTTCTCCCCAG 47749 Query 63156 ACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 63215 | || || || ||| || | || ||||| | ||| || ||| || Sbjct 47748 CACTCGTGTAAGCCGGGAGCATCGTGGGGGCACATGAGACTCCAATCCTCGTTGCTCTCG 47689 Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 63274 || || ||||| || ||||| || ||||| | ||| || |||| || | | | | Sbjct 47688 ACACGCTTCATGAACAGATCGGGGATCCACA-AGCCGTAGAATAAGTCACGTGCACGAAC 47630 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 |||||| ||||| ||||||||||| | || | ||| | | || || | |||||||| Sbjct 47629 TTCCTCCTTTCCAGTATTCTTTTTCAAGTCTAAGAATTCAAATATGTCCGCGTGCCACGG 47570 Query 63335 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63394 || | ||| || || | | |||| |||| |||||||||||||| |||| || | || Sbjct 47569 CTCAACGTAAATAGCGAAAGCTCCGGGCCTCTTGTTTCCTCCCTGGTCTACATAGCGGGC 47510 Query 63395 GGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGA 63454 |||||||| || || | || ||| || | | || || || | || || ||||| | Sbjct 47509 CGTGTTATTGTACACACGCAGCATGGGGACCAACCCATTGGAGACTCCGTTAGTACCCGC 47450 Query 63455 GATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATT 63512 ||| ||| || |||| || || | | || ||| || || || || || || Sbjct 47449 GATGTAGGAACCCTTGGCTCGGATGCAGT-GTACATGA-AGGCCGATACCTCCAGCAGAC 47392 Query 63513 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATC 63572 || || | | || || | || | ||||| ||||| || || || ||||||||| || Sbjct 47391 TTGGAAACCAGGGCACACTGCTTCAGGGTGTCGTAGATCCCTTCAATACTATCATCGCTC 47332 Query 63573 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 63632 ||| ||||| || || ||||| || |||| || | || |||| ||| Sbjct 47331 ATGGCCAGTAGGAAGCAAGAAGACAGCTGAGGACGGGGCGTGGCTGCGGAGAATAGAGTA 47272 Query 63633 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63692 || ||||| || || |||| || || || || ||||| || ||||| ||||| || Sbjct 47271 GGGCTGGCGTGAGTGAAGTATTTCTCTGACAGAAGGTTGTAAGTTTCAATGGCTGAATCA 47212 Query 63693 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 63752 || || || || || || | || | ||| | |||||| || |||||||| || Sbjct 47211 ATGTCTTCCCCGTGGATACCGACAGATACCCTCATGAGCATGTGTTGCGGTCTTTCTACA 47152 Query 63753 ATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 63812 | || | || |||| || || || ||||| |||||||| ||||| ||||| Sbjct 47151 ACTTTCCCTTCGATCTTCAGCAGATATGAGCGCTCCAAGGTTTTAAATCCAAAGTAGTTA 47092 Query 63813 TA--TGAAA 63819 || ||||| Sbjct 47091 TAATTGAAA 47083 >seq6691 Length=42033 Score = 136 bits (150), Expect = 5e-27 Identities = 263/386 (68%), Gaps = 3/386 (1%) Strand=Plus/Plus Query 33139 TCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 33198 || || || ||||| ||||| ||||| || || ||||| || | ||| | || Sbjct 14045 TCGGCCACAAATTCAATATACTGCGACATCAGGTCGCAGTTCATGCCCAGTAGTCTGACG 14104 Query 33199 GGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTA 33258 || || || | || ||||| |||||||||||| || ||||| | | |||| | Sbjct 14105 GGCAGGGCGTCGGTGAGAAACTCTTGTTCAATGATGACAGCATCCTTGACGATAGCTAGG 14164 Query 33259 ACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAG 33318 || | | || ||| || | ||| ||||| ||||| | || || || |||||| Sbjct 14165 ACTCGTGCGGGGCTGGGTTTCTGTACTAAGTGTTTGAACATGAGGCAGGCAAAGTCGCAG 14224 Query 33319 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 33378 || ||||||||||||| || | |||||| || || | |||||||| |||||| Sbjct 14225 TGGAGACCCTCGTCTCGGGAGATCAACTCGTTGCTGAAGGTCAAGCCGGGCATGAGGCCA 14284 Query 33379 CGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCA 33438 ||||| || |||||||| ||||| || || || || ||||||||||||||||| | Sbjct 14285 CGCTTCTTCAGCCAAAAGATGGAGGCAAAACTGCCGGAGAAGAAGATTCCTTCTACGCAA 14344 Query 33439 GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC-ATG--TATCCACTTTTGAGCC 33495 || ||||| | | | ||| || | ||| |||| || ||||||| | ||| Sbjct 14345 GCGAAGGCCACCACACGCTCCCCGAAGGTGGCCGTGTCGCTGCCGATCCACTGCAGGGCC 14404 Query 33496 CAATCGGCCTTCTTTTTTACACAAGG 33521 || || |||||||| || ||||| || Sbjct 14405 CAGTCTGCCTTCTTCTTCACACACGG 14430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622411200655440