Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_007023.1 Length=180500 Score E Sequences producing significant alignments: (Bits) Value seq785 206 3e-48 seq828 168 8e-37 seq35 116 4e-21 seq9405 102 9e-17 >seq785 Length=396209 Score = 206 bits (228), Expect = 3e-48 Identities = 1024/1592 (64%), Gaps = 85/1592 (5%) Strand=Plus/Minus Query 155729 CAACGAGAACGCGAACAAACAC-GCAAGGGTATTCCCGACACAGCGCAATTTGCTGGCGG 155787 ||||||||| || |||||| || |||| | || |||||| ||||| | ||||||||| Sbjct 143154 CAACGAGAATGCCAACAAAGACAGCAAAGTGAT-CCCGACCCAGCGTGACCTGCTGGCGG 143096 Query 155788 GTATTGTAGCGAAGCATTTCGCCCGTAATCATATCCTTCCGAAACATATCGTAGAAGCGC 155847 ||||||| || ||||||| |||| | ||||| | ||| || |||| |||| Sbjct 143095 GTATTGTCGCCAAGCATTACGCCAAACAGCATATTTTACCGCGTGATGTCGTGCTGGCGC 143036 Query 155848 ATGACTCCGGCGACATCCACTATCATGATCTGGATTACAGCCCGTTCACGCCATACACAA 155907 |||| ||||| ||||| |||||||| || ||||| ||||||| || | Sbjct 143035 ATGAGCGTGGCGAAATCCATTATCATGACCTCGATTATTCCCCGTTCTTCCCGATGTTTA 142976 Query 155908 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 155967 ||||| ||| | || | ||||| ||| || | | || ||||| |||||||| || | Sbjct 142975 ACTGCATGCTGATCGACCTTAAAGGCATGTTGAATCACGGTTTCAAAATGGGTAATGCGG 142916 Query 155968 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 156027 | || || | || || || || || || || | | || ||||| | ||| | Sbjct 142915 AAATTGACACGCCAAAGTCTATTTCCACCGCAACGGCCGTCACCGCGCAGATTATCGCGC 142856 Query 156028 AGATTGCTTCTCACCAGTACGGCGGGACAACCTTTGCAAACG--TGGATAAAGTGCTGGC 156085 || | || || |||||||| || ||| || || || | || |||| ||||| Sbjct 142855 AGGTCGCCAGCCATATTTACGGCGGCACGACCATT--AACCGCATCGACGAAGTACTGGC 142798 Query 156086 TCCGTATGCAGAAATGACA--TATGAAAAGCATGTTAAGGATGCTAAAAAGTATAAAATT 156143 ||| | | | | || | | || ||| | || ||| || ||| | ||| Sbjct 142797 GCCG--TTCGTCACCGCCAGCTTCAATAAACATCGTCAGACTGCCGAAGAGTGGCAGATT 142740 Query 156144 TCGTTAGATCGTACATATGCGATG-GAAAAG----ACTGAAAAAGATGTGTT-TGATGCT 156197 | |||| | || || || | || || |||||||| ||||| ||| || Sbjct 142739 GC---AGAT-GCGGAT-GGCTTTGCTCACAGCCGTACCGAAAAAGA-GTGTTATGACGCC 142686 Query 156198 TTCCAATCGTATGAATACGAAGTTAACACGCTGCATACTGCCAACGGACAAACACCTTTC 156257 ||||| ||| ||||| || ||||| |||||||| || |||||||| || || || || Sbjct 142685 TTCCAGTCGCTGGAATATGAGGTTAATACGCTGCACACCGCCAACGGCCAGACGCCGTTT 142626 Query 156258 GTTACTATTACTTTCGGTACTGGTAC-----GGGAATGTTTGAACGGATGATCCAGAAAG 156312 || || | ||| || || || |||||| || |||||||| || Sbjct 142625 GTCACCTTCGGTTTTGGCCTCGGCACATCCTGGGAAT-----CGCGCCTGATCCAGCAAT 142571 Query 156313 CTATTCTGAAAAACCGTATCCGTGGCCTGGGTAAAAAAGGTATTACTCCGGTATTCCCTA 156372 | |||||| ||||| || || ||||| ||||| | | || | |||||||| | Sbjct 142570 CAATTCTGCGTAACCGCATTGCCGGACTGGGCAAAAATCGCAAAACCGCTGTATTCCCAA 142511 Query 156373 AACTGGTTATGTTCATGGAAAAAGGCATTAACCTTGATCCAGAGGATCGCAACTATGACA 156432 ||||||| | ||| | ||| | || | | | | | || |||||| |||| Sbjct 142510 AACTGGTGTTTGCCATCCGTGACGGCCTGAATCATAAAGCCGGTGACGCCAACTACGACA 142451 Query 156433 TCAAACAACTGGCTCTGGAATGCGCTTCAAAACGTATGTACCCAGATATCATTAGTGCAT 156492 |||| |||||||| ||||||||||| || ||||||||||| || ||| | | | | Sbjct 142450 TCAAGCAACTGGCACTGGAATGCGCCAGCAAGCGTATGTACCCGGACATCCTCAAT---T 142394 Query 156493 ATAAT-AACCGTCGCA--TCACTGGTTCTAGCGTTCCTGTATCTCCTATGGGTTGTCGCA 156549 || || | | | | |||| |||| ||||| | | || ||||| || |||| Sbjct 142393 ATGATCAGGTGGTGAAAGTCACAGGTT----CGTTC--AAAACGCCGATGGGCTGCCGCA 142340 Query 156550 GTTTCCTTAGTGTGTGGCATGATGATAACGGTAATGAAG-TTCTGGATGGACGTAATAAC 156608 ||||||| | |||| |||| || || || | || | | | || || || ||||| Sbjct 142339 GTTTCCTGGGCGTGT---ATGAAGAAAATGGCGA-GATGATCCACGAGGGCCGCAATAAT 142284 Query 156609 CTGGGTGTGGTGACAATCAACCTCCCGCGTATTGCTCTTGAAGCACAATCGCAGGAAGAT 156668 | || ||| | | | || || ||||||||||| || ||||| || ||| || Sbjct 142283 ATCGGCGTGATCAGCCTGAATCTGCCGCGTATTGCGCTGGAAGC-GAACCGC-----GAC 142230 Query 156669 GAAGACGCACATGACGCATTCTGGCGTATCCTTGATGAACGTCTGGAACTGTGCTTTG-A 156727 |||| || || |||||| | || || || ||| || ||| || | | Sbjct 142229 GAAG-CG--------GCGTTCTGGGCACTGCTCGACGAGCGTTTGCTGCTG-GCGAAGAA 142180 Query 156728 AGCCCTGATGACTCGCATCGATAGCCTACGCGGTGTTAAAGCCAGTGTAGCCCCGATCCT 156787 ||| |||||||| ||||| | | || || | |||||| | || || || ||||| Sbjct 142179 AGCGCTGATGACCCGCATTGCACGTCTGGAAGGCATCAAAGCCCGCGTGGCGCCAATCCT 142120 Query 156788 GTACACGGAAGGTGCATTCGGTGTTCGTCTGAATCCTGATGATGA-AATCCTGGAACTGT 156846 ||||| ||||||||| | |||||| || ||||| |||| || || | | | || | | | Sbjct 142119 GTACATGGAAGGTGCGTGCGGTGTGCGCCTGAAAGCTGACGACGATATTTCCGGCA-TCT 142061 Query 156847 TCAAAAATGGGCGTAGCTCTATCAGTCTGGGTTATATCGGATTGCATGAAACGCTGTTAA 156906 |||||||||| ||| ||| || || || || || || ||||||||| | |||| Sbjct 142060 TCAAAAATGGCCGTGCCTCGATTTCGCTCGGATACATTGGCGTGCATGAAA--CCATTAA 142003 Query 156907 -----TGTTCGGC-TCCGGTCAACATCCGTTCGA--TCGTATTGGCTCTC-AAAATGTGG 156957 |||||||| || | | || |||||| || | | | |||| | | Sbjct 142002 CGCGCTGTTCGGCAACCAGAC-CCACGTGTTCGACGCCGGCCAGTTACGCGAAAAAGCCG 141944 Query 156958 GTAAACTGATTCTGGAATATCTACGCGCCGCGACCGAGGCATGGAAAAAGAAAACTGGAT 157017 | |||| ||| ||| || || ||||| |||||| | |||| || | Sbjct 141943 ---AGGCGATTGTGGCTCGTCTGAAAGCGGCAACCGAAAGCTGGAAAGACGAAACGGGCT 141887 Query 157018 TTGGTTTCAGTCTGTATTCAACCCCTGCCGAATCTCTCTGCCATCGCTTCTGTAAGCTGG 157077 |||||||| ||||| || || |||| || ||| | ||||||||| |||| Sbjct 141886 ACGGTTTCAGCCTGTACAGCACGCCGAGCGAAAACCTGTGCGACCGCTTCTGTCGTCTGG 141827 Query 157078 ACTTTGAGAAGTTCGGGAGTGTGAAAGGGATCACGGATAAAGGCTGGTACACAAACAGTT 157137 | | | |||||| ||| || | || |||||||| | ||||| ||||| | Sbjct 141826 ATAAAGCCGAATTCGGGCTGGTGGCCGGTGTGACTGATAAAGGTTACTACACCAACAGCT 141767 Query 157138 TCCATCTGGACGTAGACCGCACAGTGACACCGTTCGAGAAAATCGACTATGAAGCCGATT 157197 ||||||||||||| || | || | |||| ||| ||| |||||| ||||| | Sbjct 141766 TCCATCTGGACGTCGAGAAGAAGGTAAATCCGTACGAAAAACTCGACTTCGAAGCGCCGT 141707 Query 157198 AT-CATTACATTGCATCTGCTGGTCATATCAGTTATGTCGAATTCCCTGATATGAAAAAC 157256 || | || ||| | || ||| ||| | |||| ||||| |||| | || || || Sbjct 141706 ATCCGCCACTCAGCAACGGC-GGTTTCATCTGCTATGGCGAATACCCTAACCTGCAACAC 141648 Query 157257 AACCTGCAAGCCCTGGAAAAAGTCTGGGATTA 157288 || ||| |||| |||||| | || |||||||| Sbjct 141647 AATCTGAAAGCGCTGGAAGACGTGTGGGATTA 141616 >seq828 Length=218660 Score = 168 bits (186), Expect = 8e-37 Identities = 171/223 (77%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 51884 CGTGAAGTTGATATTGAGTTTCAACCGACTGTTAAAGTTGAAGGTGGACAGCACCTAAAC 51943 |||||||| || || |||| ||||| || || |||||||| |||||||| ||| Sbjct 42352 CGTGAAGTGCCAATGGAAGTTCAGCCGACCGTGCGCGTGGAAGGTGGTCAGCACCTGAAC 42293 Query 51944 GTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCTGTGAAACATCCTGAGAAGTACCCA 52003 || || || || ||||| ||||| ||||||||||| || |||||||||||||| |||||| Sbjct 42292 GTTAACGTACTGCGTCGTGAAACACTGGAAGATGCGGTTAAACATCCTGAGAAATACCCA 42233 Query 52004 CAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTTAATGCACTGACTCCAGAACAA 52063 ||| | || || || || || || ||||| || || || || |||||||| | ||||| Sbjct 42232 CAGCTGACTATTCGTGTGTCTGGCTATGCGGTACGTTTCAACTCACTGACTGCTGAACAG 42173 Query 52064 CAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATGTAAT 52106 ||||| ||||| || || | || || || |||||| |||||| Sbjct 42172 CAGCGTGACGTGATTACCCGTACTTTCACTGAAAGCCTGTAAT 42130 >seq35 Length=455554 Score = 116 bits (128), Expect = 4e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 40713 ATCATCGTTTCCGCATGGAACCCTGTTGATCTGGATAAAATGGCATTGCGTCCGTGTCAC 40772 || ||||| || ||||||||| | || |||||||| ||||| || || || ||| Sbjct 112509 ATTATCGTGTCTGCATGGAACGTGGGCGAACTGGATAAGATGGCGCTGGCACCTTGCCAC 112568 Query 40773 TGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCG 40832 ||||||||||||| || | |||||||| |||| ||| ||| ||||| || Sbjct 112569 GCTTTCTTCCAGTTCTATGTGGCCGACGGTAAATTGTCCTGCCAGCTGTACCAGCGCTCA 112628 Query 40833 GTTGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGACGCATATT 40892 ||| ||||| | || |||||||||||||||||| |||||| || ||| |||||| Sbjct 112629 TGCGATATCTTCCTCGGCTTGCCGTTCAATATCGCCAGCTACGCACTGCTGGTGCATATG 112688 Query 40893 ATCGCTGATATTTGCGGGTACGAAGTAGGTGATCTGGTTTGGACAGGTGGTGAT 40946 || || | |||| ||||| |||||| | || ||||| ||||| ||| Sbjct 112689 ATGGCGCAACAATGCGACCTTGAAGTGGGTGATTTTGTCTGGACGGGTGGCGAT 112742 >seq9405 Length=40329 Score = 102 bits (112), Expect = 9e-17 Identities = 275/413 (67%), Gaps = 12/413 (3%) Strand=Plus/Plus Query 42982 ATCAAAAAATATGGCTTGCGTAACTCAACTCTTTCCGCTTTAATGCCATGTGAGAGTAGT 43041 ||||||| | ||| |||||||||| || || || || | ||||| | |||| | Sbjct 35094 ATCAAAACGCACGGCCTGCGTAACTCCACGCTGTCTGCGCTGATGCCGTCCGAGACCTCT 35153 Query 43042 TCTCAAGTAAGCAACTCAACAAACGGGATTGAACCGCCTCGCGGTCCTGTGAGTGTGAAA 43101 || || | |||| | || ||||| || || || || ||||| | | | ||| | ||| Sbjct 35154 TCGCAGATCTCCAACGCTACCAACGGTATCGAGCCACCGCGCGGCCATATCAGTATTAAA 35213 Query 43102 TCTTCGAAAGAAGGT-TCATTCAACCAGGTAGTACCGAACCA-GAACGATCAGATTGATT 43159 | |||||||| || || | | | |||| || ||| | | || || || || ||| Sbjct 35214 GCGTCGAAAGACGGGATCCTGCGTC-AGGTCGTGCCGGAGTATGAGCG-TCTGAAAGATC 35271 Query 43160 TCTATGATTATCTCTGGACAATGGCAAAACGCGGTAATAAAGGTTATCTGTCTCATGTTG 43219 || || || ||| ||| | || || | || |||||| | |||| Sbjct 35272 AGTACGAACTGCTGTGGGATATGCCGAACAACG------ACGGCTATCTGCAACTGGTTG 35325 Query 43220 CTGTTATGCAGAAGTTTGTTGATCAAGCGATCTCTGCAAACACCAACTATGATCCGGCTA 43279 || |||||||| || | ||||| ||||| || | |||||||||||||| ||| | Sbjct 35326 GCGTGATGCAGAAATTCATCGATCAGGCGATTTCGTCCAACACCAACTATGACCCGTCGC 35385 Query 43280 ACTTCCCAGATGGTAAAGTGAAATCTGAAACCATCATTGAT-GACCTGCTTTATGCGAAC 43338 |||||| | |||||||| |||||| | |||| ||| |||| || || Sbjct 35386 GCTTCCCGAACAGTAAAGTGCCGA-TGAAACAGTTGTTGAAAGACTTGCTGACAGCCTAC 35444 Query 43339 TACTACGGCGTGAAAACTCTGTATTATCACAACACCCGCGACGGTGCAGGTGA 43391 | | ||||| ||||| ||||||||||| ||||||||||||||||| | ||| Sbjct 35445 AAATTTGGCGTCAAAACGCTGTATTATCAGAACACCCGCGACGGTGCTGATGA 35497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576975128654400