Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq742 170 5e-37
>seq742
Length=196864
Score = 170 bits (188), Expect = 5e-37
Identities = 543/827 (66%), Gaps = 14/827 (2%)
Strand=Plus/Plus
Query 363443 TTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATG 363502
|||| ||| | ||||| || ||| | ||| | || || | |||||||| | ||
Sbjct 47151 TTGTAGAAAGACCGCAACACATGCTCATGAGGGTATCTGTCGGTATCCACGGGGAAGACA 47210
Query 363503 TTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTG-TA-TTCACGCACGCCAC 363560
||||| | || |||||||| || || ||||| || | || ||||| |||||||
Sbjct 47211 TTGATTCAGCCATTGAAACTTACAACCTTCT--GTCAGAGAAATACTTCACTCACGCCAG 47268
Query 363561 GCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAA 363620
|| || | | | || | || | ||| ||| ||||||||||||| || ||
Sbjct 47269 CCCTACTCTATTCTCCGCAGCCACGCCCCGTCCTCAGCTGTCTTCTTGCTTCCTACTGGC 47328
Query 363621 AATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTC 363680
|||| || ||| || || || |||| ||||| || ||| | ||||| || ||||
Sbjct 47329 CATGAGCGATGATAGTATTGAAGGGATCTACGACACCCTGAAGCAGTGTGCCCTGGTTTC 47388
Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGCACAGAACAGTTAC 363738
|||| ||| || || || || | || || ||| || | || || || |||
Sbjct 47389 CAAGTCTGCTGGAGGTATCGGCCT-TC-ATGTACACTGCATCCGAGCCAAGGGTTCCTAC 47446
Query 363739 ATTCGCGGC-ACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAA 363797
|| ||||| || ||| ||| |||||| |||| |||||||| ||||||| | ||
Sbjct 47447 AT-CGCGGGTACTAACGGAGTCTCCAATGGGTTGGTCCCCATGCTGCGTGTGTACAATAA 47505
Query 363798 TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCT 363857
|| || | || || |||||||| ||| ||| | || || || ||||| || |
Sbjct 47506 CACGGCCCGCTATGTAGACCAGGGAGGAAACAAGAGGCCCGGAGCTTTCGCTATTTACGT 47565
Query 363858 CGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGA 363917
||||| || || || || ||||| || | || | || || || ||||| ||
Sbjct 47566 TGAGCCGTGGCACGCGGACATATTTGAATTCTTAGACTTGAAAAAGAATACTGGAAAGGA 47625
Query 363918 GGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCG 363977
|||| | ||||||||||| | ||||| | | ||| | | || | || ||||||||
Sbjct 47626 GGAAGTTCGTGCACGTGACTTATTCTACGGCTTGTGGATCCCCGATCTGTTCATGAAGCG 47685
Query 363978 CGTGGAG-GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTC-C 364035
|| ||| ||| || ||||| ||| | ||||| ||||| ||| || ||| | |
Sbjct 47686 TGTCGAGAGCA-ACGAGGATTGGAGTCTCATGTGCCCCCACGATGCTCCCGG-CTTACAC 47743
Query 364036 GATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCT 364095
|| ||||| || || | || ||||| ||| | || ||| | || || ||
Sbjct 47744 GAGTGCTGGGGAGAAGAATTTGAGGCTCTGTACACACGCTACGAAGCCGAAGGTCGTTCT 47803
Query 364096 CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACA 364155
|||| || || |||| | ||| | |||||||| || || || | || ||
Sbjct 47804 AAGAAGAAGATCAAGGCGCAGACTTTGTGGATGGCCATCATCGAATCTCAAGTAGAAACG 47863
Query 364156 GGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTT 364215
||||| ||||| ||| ||||||| || |||||||||| ||| |||||| || | ||
Sbjct 47864 GGAACCCCCTACATGCTGTACAAGGACGCGTGCAACCGAAAGAGCAACCAACAAAATCTG 47923
Query 364216 GGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACAC 364262
|| || ||| || || ||||| || || || || ||||||||||
Sbjct 47924 GGAACTATTAAGTGCAGTAACCTCTGCACAGAAATAGTTGAATACAC 47970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1302204126028188
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |