Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq223 159 3e-34 seq742 122 7e-23 seq48539 105 6e-18 seq8056 104 2e-17 seq15643 93.3 4e-14 >seq223 Length=511576 Score = 159 bits (176), Expect = 3e-34 Identities = 326/482 (68%), Gaps = 2/482 (0%) Strand=Plus/Minus Query 55822 TCGTTGCCGCATATTTTGTCGAGTGGGGTGTTTATCATAGAAACTTTCCTGTCACTCGAG 55881 |||||| |||||||||||| |||||||| || ||| | | || | || | | Sbjct 113978 TCGTTGGCGCATATTTTGTTGAGTGGGGCGTGTATGGTCGCGGATTCTCCGTGGATAAAA 113919 Query 55882 TTCCCACTCCTAATCTGTCACACATTCTCTACGGATTCATACCGATATGCGGCGGCGACG 55941 | || | | || ||| |||| || | ||||| |||| ||||| |||||||| |||| Sbjct 113918 TCCCTGCGCAGAACCTGACACATATCTTGTACGGCTTCACGCCGATTTGCGGCGGGGACG 113859 Query 55942 GCATTAACGACAGTCTCAAGACGATAACCGGTAGTTTTGAAGCGCTTCAGCGATCGTGTT 56001 | |||||||||||| | || | || || |||||| | || | || || | ||| Sbjct 113858 GGATTAACGACAGTTTAAAAAGCATTGAGGGCAGTTTTCAGGCCTTGCAACGCGCCTGTG 113799 Query 56002 CGGGTCGAGACGACTTCAAAGTGTCGATTCATGACCCGTGGGCTGCGGTCCAAAAGCCCC 56061 |||| || | || || ||||| |||| || || || ||||||||||| || | ||| | Sbjct 113798 CGGGGCGTCAGGATTTTAAAGTTGCGATACACGATCCCTGGGCTGCGGTGCAGATGCCTC 113739 Query 56062 AAAAACAAGTGACCGCATGGAACGAACCATACAAAGGCAACTTTGGACAATTGATGGCAG 56121 | || || | | || | ||| || ||||| || ||||| || ||||||| | Sbjct 113738 AGCAAGGCGTCAGTGAATATTCAGCACCTTATAAAGGTAATTTTGGTCAGCTGATGGC-G 113680 Query 56122 CT-AAACTGGCGAATCCCCATGTTAAAGTGCTGCCTTCGATCGGTGGCTGGACTTTATCC 56180 || ||| || |||| | | ||| | | ||||| |||||||||||||| || || Sbjct 113679 CTGAAAAAAGCCTATCCAAACCTGAAAATTGTCCCTTCCATCGGTGGCTGGACGTTGTCA 113620 Query 56181 GATCCGTTCTTTTACTTTCACGATGCGGTCAAACGCAAAATTTTTGTCGATTCTGTCGTC 56240 || ||||||| || | | | ||| || || || | | || || | || || Sbjct 113619 GACCCGTTCTATTTCATGAAGGATAAGGCGAAGCGGGACGTCTTCGTAGCCTCGGTAAAA 113560 Query 56241 GAGTTTTTACAGACCTGGAAATTTTTCGATGGTGTCGACATCGACTGGGAGTTTCCCGGC 56300 || || | || |||||||| || || || ||||| || || |||||||| ||||| ||| Sbjct 113559 GAATTCCTGCAAACCTGGAAGTTCTTTGACGGTGTGGATATTGACTGGGAATTTCCGGGC 113500 Query 56301 GG 56302 || Sbjct 113499 GG 113498 >seq742 Length=196864 Score = 122 bits (134), Expect = 7e-23 Identities = 902/1426 (63%), Gaps = 48/1426 (3%) Strand=Plus/Minus Query 131864 ACGGTGAATTGAATTGTATTCGCAGCAGGCTTAGTTCTTAAATAATACATGCCCGTCTTC 131923 |||||||| || || | ||| | |||||||| ||||| || |||||||| || |||||| Sbjct 48915 ACGGTGAACTGGATAGCATTTACGGCAGGCTTTGTTCTCAAGTAATACATTCCAGTCTTC 48856 Query 131924 AAGCCTTTCTCCCAAGAATAATTGTGTATGGACGATAAAATTTTGTAGCTGGGATTGGCC 131983 ||||| ||| ||| ||| ||| || || | | || |||| |||| | ||| Sbjct 48855 AAGCCCATCTTCCAGCCATAGAAGTGGATAGAAGTGAGCTTTCCGTAGTTGGGCTCTGCC 48796 Query 131984 ACAAACAGATTGAGCGATTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCATATTC 132043 || | |||| || ||||| || || || | | ||| | ||| || ||||| || Sbjct 48795 ACGTGTATGTTGAAGGACTGACTTTGGTCAATAAAGGCTCCTCGGTCGGCTGCCATCTTG 48736 Query 132044 AACAATACTTTCTGCTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGACGTCGTGTGGA 132103 | || || ||| | |||||||||| | |||||| |||| | ||| || | || Sbjct 48735 ATCAGTATTTTGTTGGAAATTTCCCAAACTGTCTTGTAGAGATCTCTGATGTGCTTGGGT 48676 Query 132104 ATGTCATCGATATTCTGTACAGATCCGTTGTT---TTTGATAATTTTCATCATCAGTTCT 132160 || || | || || | ||||||||||| |||| | || |||| || Sbjct 48675 ATTCTGTCCAGGTTTTGAATGGATCCGTTGTTGGCAATGATGAGATTTTTCAT--GT--C 48620 Query 132161 GTCGAGTACACGTTGCAGTCTACGAGTTTATCGACG----AGATGTTGATTTACTATTTG 132216 |||| ||| ||| || || || | ||| ||||| ||||| || | || Sbjct 48619 GTCG-TCCCACAAATCAGCCT-CG-GTCAAATCACGCAGTAGATGGTGATTCACAACCTG 48563 Query 132217 ATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAACGATTC 132276 |||| || || ||||| |||| ||| | || ||| || || || || ||||| Sbjct 48562 GAATTCTCCAGACAAGACCCTTCTGGTGTAGATGTTGGAAGTGAAGGGTTCAAAGGATTC 48503 Query 132277 GTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAGGCAATCAATAATGAATT 132336 ||||||||| || || || || || | || || |||||| || | | | || || Sbjct 48502 GTTGTTTCCTAAAATCTGGGCGGTGGAGGCGGTAGGCATGGGTGCGAGAAGCAGCGAGTT 48443 Query 132337 GCGCAGCCCGTGTATGGCCAT-TTGCCGTTTAAGCTCGTCCCAGTTCCACAGATCATTCG 132395 | | |||||||| || || || | || ||| | |||||||||||| ||| | | Sbjct 48442 CCTGACTCCGTGTATCGCGATCTTAGCTTTCAAG-GCAGCCCAGTTCCACAAATCTGTAG 48384 Query 132396 ATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTACTTGCAGGAGATCCGTTAT 132455 | | | ||||| ||| | || | | || | || ||||| |||| | Sbjct 48383 ---GCTTCTTGTCCCACATCTCATATTGAAGAATCCCTTTGCTGACAGGACATCCTGGGT 48327 Query 132456 AAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCTCTGACT-CAGGGCACCATAA 132514 | | ||||||| || | | ||| || || || || | ||| ||||| ||| Sbjct 48326 ACGTCTCGTATGTACCCTCCTTCTCGGCCAGCTCGCAACT-TGCTTCCAGAGCACCGTAA 48268 Query 132515 TAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTTGTTGACTGTCGTAGGGCAAA 132574 || | ||||| | |||| | ||||| | |||| || ||| || | ||||| Sbjct 48267 TACAATGTCTCAAATATTTGTTGATTCAGAAGCTGGGCTTTTTCACTCTCAAAAGGCAAT 48208 Query 132575 TTTAAAATAGCGAACGCATCGGCAAGTCCCTGAATGCCGATACCGATGGGTCTATGTTTA 132634 | | | | || ||||| || || || || || || ||||||||||| | || Sbjct 48207 CTCATTAAGACAAAAGCATCTGCCAGGCCTTGTATTCCAATACCGATGGGGCGGTGACGC 48148 Query 132635 AAATTCGATACTTGTGC-GCTAGTCAGCGGATAAAAGTTTTTGTCTATTATTTTATTGAG 132693 | |||||| | || || || | || |||||||| ||| || ||||| || | Sbjct 48147 ATGTTCGATGTTCTAGCTTCTGGT-ACAGGGTAAAAGTTAACGTCGATAATTTTGTTCAA 48089 Query 132694 ATTGTTAGTGACAACTCTAGCCACTTTATATAGCGATTCAAAGTCAAAGTTTTTAGTCCT 132753 ||| ||||||||| | | || | | ||| ||||||||| || || ||| Sbjct 48088 ATTTTTAGTGACAGTCTTGGTTACGATCTTCAGCTTTTCAAAGTCGAA-----TA--CCT 48036 Query 132754 T-TTGTTGGCAAAACAATTGACGGCAATCGAGGCCAAATTGCATACGGCTGTCTCTTTAT 132812 | || | |||| |||||| || || |||||||||||||| || ||| || | | Sbjct 48035 TATTATCTACAAACATATTGACAGCGATAGAGGCCAAATTGCAGACAGCTACTTCATCTT 47976 Query 132813 TATCGCTATACTGTACGATTTCTGCACACAAATTACTGTTTCGAATAACTCCCAAGtttt 132872 | | || | || ||||||| || | |||||| |||| ||||| |||| Sbjct 47975 TGGAAGTGTATTCAACTATTTCTGTGCAGAGGTTACTGCACTTAATAGTTCCCAGATTTT 47916 Query 132873 tttGATTGTTTTTCTCGTTT--ACGTTATCTTTATGCAACATGTACGGACCTCCGGTTTC 132930 ||| ||| | || ||| || ||| || || | || |||||| || ||| ||||| Sbjct 47915 GTTGGTTGCTCTT-TCGGTTGCACG-CGTCCTTGTACAGCATGTAGGGGGTTCCCGTTTC 47858 Query 132931 GACCTGAATTTCGATAAT--TTTTCTGTGAAGATCTAACGCCAAAAT-TTGTTCTTTAAA 132987 || ||| |||||| || || ||| ||| |||| || || ||||| || Sbjct 47857 TACTTGAGATTCGATGATGGCCATCCACAAAG-TCT-GCGCCTTGATCTTCTTCTTAGAA 47800 Query 132988 CTTGCCCTGAGTC-TCGTAACTTTCGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGT 133046 | | ||| | | ||||| | | ||| | |||||||||||| || |||| |||| Sbjct 47799 C--GACCTTCGGCTTCGTAGCGTGTGTACAGAGCCTCAAATTCTTCTCCCCAGCACTCGT 47742 Query 133047 TCAAACCGGGACACTCGTCAGGACACATCAATGACCATTTTTCTCCTGCGCTC-ACCCTT 133105 || |||||| |||| || ||||| | ||| | || ||| ||| || | Sbjct 47741 GTAAGCCGGGAGCATCGTGGGGGCACATGAGACTCCAATCCTC-GTTGCTCTCGACACGC 47683 Query 133106 TTCATGAACAACGAAGGTGTCCACATGGCAAAAAATAAATCGCGAGCCTTCATATCTTCC 133165 |||||||||| || |||||| | | | ||||| || || || | || ||| Sbjct 47682 TTCATGAACAGATCGGGGATCCACAAGCCGTAGAATAAGTCACGTGCACGAACTTCCTCC 47623 Query 133166 GCGCCCATATTTCGTTTCAAGTCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATA 133225 || |||| ||||||||| || || ||| ||||| || ||||| ||||| | Sbjct 47622 TTTCCAGTATTCTTTTTCAAGTCTAAGAATTCAAATATGTCCGCGTGCCACGGCTCAACG 47563 Query 133226 TATACGGCCAAAGCGCC---TTTCCTTTTACCTCCCTGATCCACAT 133268 || | || ||||| || || | || |||||||| || |||| Sbjct 47562 TAAATAGCGAAAGCTCCGGGCCTCTTGTTTCCTCCCTGGTCTACAT 47517 >seq48539 Length=7100 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 23985 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAG 24044 ||||| ||||| | || || ||||| || ||||| || |||| || | || || ||| Sbjct 6253 AACAACATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATAACTTTGGAGGTGGAG 6312 Query 24045 GCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCC 24104 | ||| || || || | || || ||| ||| ||||||||||| || ||||| Sbjct 6313 CCTTCCGATACGATTGAAAACGTGAAGGCAAAAATTCAAGACAAAGAAGGTATCCCTCCA 6372 Query 24105 GATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGAT 24164 ||||| ||||| ||||||| || |||||||| | ||||| | | ||| | || |||| Sbjct 6373 GATCAGCAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGACGGCCGAACCCTCTCCGAT 6432 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || ||||| ||||| || | || || ||| Sbjct 6433 TACAATATCCAAAAGGAATCCACCCTCCACTTGGTG 6468 >seq8056 Length=34938 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||||||||||| || | || ||| | || ||||| || Sbjct 32131 ATGCAGATCTTCGTCAAGACATTAACTGGCAAGACAATCACCCTGGAGGTCGAACCCTCA 32190 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | ||||| || ||| || || |||||||| || || ||||| Sbjct 32191 GATACTATTGAAAACGTCAAGGCCAAAATTCAAGATAAGGAAGGCATCCCCCCAGATCAG 32250 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| || |||||||| || ||||||| | | | || ||| || ||| Sbjct 32251 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGACGTACCCTCTCCGACTACAAC 32310 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||| ||||||||||| ||||| | || || Sbjct 32311 ATTCAGAAAGAATCTACCCTTCATCTTGTATT 32342 >seq15643 Length=27379 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || |||||| | || || || || | || || ||| | || ||| | || || ||| | Sbjct 12043 CACAATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACCCTTGAGGTAGAGCC 12102 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||| ||||| | |||||| ||||| ||||||||||| || ||||| || Sbjct 12103 CTCTGACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCTCCAGA 12162 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||||| |||| | || ||| || || ||||| |||| | | | | ||||| Sbjct 12163 TCAGCAGAGGTTGATCTTCGCCGGAAAACAGCTCGAGGATGGACGTACCCTTTCAGATTA 12222 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || ||| |||| |||||| | || | ||||||| Sbjct 12223 CAATATCCAGAAGGAGTCCACACTTCACTTAGTGCTTCGACTCCGAGGAGG 12273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429575320509270