Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq223 260 1e-64 seq48539 113 4e-20 seq8056 104 2e-17 seq7907 95.1 1e-14 seq8521 84.2 2e-11 >seq223 Length=511576 Score = 260 bits (288), Expect = 1e-64 Identities = 359/502 (72%), Gaps = 0/502 (0%) Strand=Plus/Plus Query 96502 TGTTGCCGAGCGTCGGGTTGGCGCCTTTACCGCCCGGAAATTCCCAGTCGATGTCCACTC 96561 || |||| |||| |||||| | || ||||||||||||||||||||| || ||||| | Sbjct 113469 TGCTGCCCAGCGCCGGGTTTTCACCGCCACCGCCCGGAAATTCCCAGTCAATATCCACAC 113528 Query 96562 CGTCGAAAAATTTCCAAACCTGCAAAAATTCTCTGACGGAGTCTACAAACACGCGCCGTT 96621 |||| || || ||||| |||| |||||| | || ||| |||| || ||| ||| | Sbjct 113529 CGTCAAAGAACTTCCAGGTTTGCAGGAATTCTTTTACCGAGGCTACGAAGACGTCCCGCT 113588 Query 96622 TTTCCGCGTCGTGCATGTAATAGAACGGGTCGGACAGTGTCCAGCCGCCGATAGACGGCA 96681 | || || | |||| ||||||||||||| |||| |||||||| ||||| || || | Sbjct 113589 TCGCCTTATCCTTCATGAAATAGAACGGGTCTGACAACGTCCAGCCACCGATGGAAGGGA 113648 Query 96682 GAATTTTAAGGTGTGGATTAGCCAGTTTGGCCGCCATCAACTGACCAAAGTTGCCTTTGT 96741 |||||| |||| ||||| || ||| |||||||| ||||||||| || ||||| | Sbjct 113649 CAATTTTCAGGTTTGGATAGGCTTTTTTCAGCGCCATCAGCTGACCAAAATTACCTTTAT 113708 Query 96742 AGGGCTCGTTCCAAGCAGACACGCCCTTTTGCGGTTTTTGTACTGCGGCCCAAGGGTCGT 96801 | || | | || ||||| | || || | || || || ||||| || |||| Sbjct 113709 AAGGTGCTGAATATTCACTGACGCCTTGCTGAGGCATCTGCACCGCAGCCCAGGGATCGT 113768 Query 96802 GAATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAGCGTTGCAGCGCTTCAAAACTAC 96861 | || |||||||||||||| ||| ||| || | |||||||| || | |||||| | Sbjct 113769 GTATCGCAACTTTAAAATCCTGACGCCCCGCACAGGCGCGTTGCAAGGCCTGAAAACTGC 113828 Query 96862 CGGGTATGGTTTTAAGGGCATCGTTAAGGCCGTCGCCGCCACAAATGGGTATAAACCCGT 96921 | ||| |||| | ||||||| ||||| ||||| ||||| || | || |||| Sbjct 113829 CCTCAATGCTTTTTAAACTGTCGTTAATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGT 113888 Query 96922 ACAACAAATGTGACAAGTTGGGCAGCGGCACTTTGTCCACCGGAAAGTTACGACCATACA 96981 |||| | ||||| || ||| || || | ||| ||||| | || |||||||||| Sbjct 113889 ACAAGATATGTGTCAGGTTCTGCGCAGGGATTTTATCCACGGAGAATCCGCGACCATACA 113948 Query 96982 CGCCCCATTCCACAAAATACGC 97003 ||||||| || |||||||| || Sbjct 113949 CGCCCCACTCAACAAAATATGC 113970 >seq48539 Length=7100 Score = 113 bits (124), Expect = 4e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | || |||| || || ||||| |||||||| || ||||| |||| Sbjct 6485 CCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAG 6426 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | |||| ||||| || ||||| || |||| |||| ||| || || ||| Sbjct 6425 AGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGG 6366 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || |||||||| ||||| |||||| | | | || ||| |||||| Sbjct 6365 ATACCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACC 6306 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGCCT 16945 |||| || || || || || |||| ||||| || ||||||||||| |||| |||| Sbjct 6305 TCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATGTTGTTGCCT 6249 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||||||||| ||||||||||| | | ||| | || Sbjct 6926 AGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTACGTCCATCT 6867 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||| || || ||| | || | || ||| || || || | || || ||||| Sbjct 6866 TCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCT 6807 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | || || ||| || ||||| |||||||||| Sbjct 6806 TGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAACTTCCAAGGTGATGGTT 6747 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || || || || |||||||||||||||||| Sbjct 6746 TTGCCAGTAAGGGTCTTGACAAAAATCTGCATT 6714 >seq8056 Length=34938 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | || |||| ||| || || |||||||| || || ||||| |||| Sbjct 32129 CCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAA 32070 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || || |||||||| || || | ||||| || ||||| ||| ||| Sbjct 32069 AGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGA 32010 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || |||||||| ||||| | ||| || | | | || || |||||| Sbjct 32009 ATTCCTTCTTTGTCTTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAACC 31950 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || |||||||||| ||||| || ||||||||||| Sbjct 31949 TCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 31903 >seq7907 Length=104607 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 29343 CGGCGGCGTGGGGCTGAATCTAACGGGCGGCAACCACCTCGTTTTGTTGGAGCCGCACTG 29402 |||||| ||||||||||| || | || |||||||| || | || |||| | |||||| Sbjct 83867 CGGCGGAGTGGGGCTGAACCTGATCGGGGGCAACCATCTGCTGCTGCTGGACCTGCACTG 83808 Query 29403 GAACCCGCAGGTGGAGTTGCAGGCGCAGGGCCGCATCCACCGTTTGGGCCAGCGCAAACG 29462 ||| || ||| ||||| |||||||||| | | ||| |||| |||| ||| ||||| Sbjct 83807 GAATCCACAGCTGGAGGCCCAGGCGCAGGACAGGATCTACCGGGTGGGGCAGATCAAACC 83748 Query 29463 CGCGCACGTGTACAA 29477 || |||| | ||||| Sbjct 83747 CGTGCACATTTACAA 83733 >seq8521 Length=40141 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||| ||||| ||||||||||||| | ||| | || Sbjct 2914 AGGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGAAAGGGTACGTCCATCT 2855 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||||||| || || ||| | || | || ||| || || || | || || || || Sbjct 2854 TCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCC 2795 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | ||||| |||||| || | |||||||| Sbjct 2794 TGGATCTTGGCT--TTCACATTCTCAATTGTGTCTGAGGGCTCAACCTCTAGGGTGATGG 2737 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| ||||||||||| |||||||| Sbjct 2736 TCTTCCCGGTCAGGGTTTTGACAAAGATCTGCAT 2703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404748165853660