Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq223 260 1e-64
seq48539 113 4e-20
seq8056 104 2e-17
seq7907 95.1 1e-14
seq8521 84.2 2e-11
>seq223
Length=511576
Score = 260 bits (288), Expect = 1e-64
Identities = 359/502 (72%), Gaps = 0/502 (0%)
Strand=Plus/Plus
Query 96502 TGTTGCCGAGCGTCGGGTTGGCGCCTTTACCGCCCGGAAATTCCCAGTCGATGTCCACTC 96561
|| |||| |||| |||||| | || ||||||||||||||||||||| || ||||| |
Sbjct 113469 TGCTGCCCAGCGCCGGGTTTTCACCGCCACCGCCCGGAAATTCCCAGTCAATATCCACAC 113528
Query 96562 CGTCGAAAAATTTCCAAACCTGCAAAAATTCTCTGACGGAGTCTACAAACACGCGCCGTT 96621
|||| || || ||||| |||| |||||| | || ||| |||| || ||| ||| |
Sbjct 113529 CGTCAAAGAACTTCCAGGTTTGCAGGAATTCTTTTACCGAGGCTACGAAGACGTCCCGCT 113588
Query 96622 TTTCCGCGTCGTGCATGTAATAGAACGGGTCGGACAGTGTCCAGCCGCCGATAGACGGCA 96681
| || || | |||| ||||||||||||| |||| |||||||| ||||| || || |
Sbjct 113589 TCGCCTTATCCTTCATGAAATAGAACGGGTCTGACAACGTCCAGCCACCGATGGAAGGGA 113648
Query 96682 GAATTTTAAGGTGTGGATTAGCCAGTTTGGCCGCCATCAACTGACCAAAGTTGCCTTTGT 96741
|||||| |||| ||||| || ||| |||||||| ||||||||| || ||||| |
Sbjct 113649 CAATTTTCAGGTTTGGATAGGCTTTTTTCAGCGCCATCAGCTGACCAAAATTACCTTTAT 113708
Query 96742 AGGGCTCGTTCCAAGCAGACACGCCCTTTTGCGGTTTTTGTACTGCGGCCCAAGGGTCGT 96801
| || | | || ||||| | || || | || || || ||||| || ||||
Sbjct 113709 AAGGTGCTGAATATTCACTGACGCCTTGCTGAGGCATCTGCACCGCAGCCCAGGGATCGT 113768
Query 96802 GAATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAGCGTTGCAGCGCTTCAAAACTAC 96861
| || |||||||||||||| ||| ||| || | |||||||| || | |||||| |
Sbjct 113769 GTATCGCAACTTTAAAATCCTGACGCCCCGCACAGGCGCGTTGCAAGGCCTGAAAACTGC 113828
Query 96862 CGGGTATGGTTTTAAGGGCATCGTTAAGGCCGTCGCCGCCACAAATGGGTATAAACCCGT 96921
| ||| |||| | ||||||| ||||| ||||| ||||| || | || ||||
Sbjct 113829 CCTCAATGCTTTTTAAACTGTCGTTAATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGT 113888
Query 96922 ACAACAAATGTGACAAGTTGGGCAGCGGCACTTTGTCCACCGGAAAGTTACGACCATACA 96981
|||| | ||||| || ||| || || | ||| ||||| | || ||||||||||
Sbjct 113889 ACAAGATATGTGTCAGGTTCTGCGCAGGGATTTTATCCACGGAGAATCCGCGACCATACA 113948
Query 96982 CGCCCCATTCCACAAAATACGC 97003
||||||| || |||||||| ||
Sbjct 113949 CGCCCCACTCAACAAAATATGC 113970
>seq48539
Length=7100
Score = 113 bits (124), Expect = 4e-20
Identities = 167/237 (70%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|||||||| || | || |||| || || ||||| |||||||| || ||||| ||||
Sbjct 6485 CCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAG 6426
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| |||| | |||| ||||| || ||||| || |||| |||| ||| || || |||
Sbjct 6425 AGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGG 6366
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| || |||||||| ||||| |||||| | | | || ||| ||||||
Sbjct 6365 ATACCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACC 6306
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGCCT 16945
|||| || || || || || |||| ||||| || ||||||||||| |||| ||||
Sbjct 6305 TCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATGTTGTTGCCT 6249
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || || ||||||||||| ||||||||||| | | ||| | ||
Sbjct 6926 AGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTACGTCCATCT 6867
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|||||||| || || ||| | || | || ||| || || || | || || |||||
Sbjct 6866 TCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCT 6807
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
||| | ||| || | | | || || ||| || ||||| ||||||||||
Sbjct 6806 TGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAACTTCCAAGGTGATGGTT 6747
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|| || || || || ||||||||||||||||||
Sbjct 6746 TTGCCAGTAAGGGTCTTGACAAAAATCTGCATT 6714
>seq8056
Length=34938
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|||||||| || | || |||| ||| || || |||||||| || || ||||| ||||
Sbjct 32129 CCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAA 32070
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | || || |||||||| || || | ||||| || ||||| ||| |||
Sbjct 32069 AGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGA 32010
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| || |||||||| ||||| | ||| || | | | || || ||||||
Sbjct 32009 ATTCCTTCTTTGTCTTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAACC 31950
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||||| || |||||||||| ||||| || |||||||||||
Sbjct 31949 TCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 31903
>seq7907
Length=104607
Score = 95.1 bits (104), Expect = 1e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 29343 CGGCGGCGTGGGGCTGAATCTAACGGGCGGCAACCACCTCGTTTTGTTGGAGCCGCACTG 29402
|||||| ||||||||||| || | || |||||||| || | || |||| | ||||||
Sbjct 83867 CGGCGGAGTGGGGCTGAACCTGATCGGGGGCAACCATCTGCTGCTGCTGGACCTGCACTG 83808
Query 29403 GAACCCGCAGGTGGAGTTGCAGGCGCAGGGCCGCATCCACCGTTTGGGCCAGCGCAAACG 29462
||| || ||| ||||| |||||||||| | | ||| |||| |||| ||| |||||
Sbjct 83807 GAATCCACAGCTGGAGGCCCAGGCGCAGGACAGGATCTACCGGGTGGGGCAGATCAAACC 83748
Query 29463 CGCGCACGTGTACAA 29477
|| |||| | |||||
Sbjct 83747 CGTGCACATTTACAA 83733
>seq8521
Length=40141
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/214 (69%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || || ||||| ||||| ||||||||||||| | ||| | ||
Sbjct 2914 AGGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGAAAGGGTACGTCCATCT 2855
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||||||| || || ||| | || | || ||| || || || | || || || ||
Sbjct 2854 TCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCC 2795
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || ||| ||||| | | | ||||| |||||| || | ||||||||
Sbjct 2794 TGGATCTTGGCT--TTCACATTCTCAATTGTGTCTGAGGGCTCAACCTCTAGGGTGATGG 2737
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || |||||||| ||||||||||| ||||||||
Sbjct 2736 TCTTCCCGGTCAGGGTTTTGACAAAGATCTGCAT 2703
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404748165853660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |