Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8056 138 8e-28 seq14843 136 3e-27 seq18382 116 2e-21 seq48539 113 3e-20 seq1236 111 1e-19 seq1190 104 2e-17 seq2424 102 5e-17 seq1513 96.9 2e-15 seq8521 89.7 3e-13 seq15643 87.8 1e-12 >seq8056 Length=34938 Score = 138 bits (152), Expect = 8e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||| | ||| | ||||||||| || || |||||| || ||||||||||| || Sbjct 32129 CCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAA 32070 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || |||||||||||||| || || || || ||||||||||| | || Sbjct 32069 AGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGA 32010 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| |||||| ||| ||||| | || |||||| ||||| Sbjct 32009 ATTCCTTCTTTGTCTTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAACC 31950 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || ||||| || || || || ||||| ||||||||||| ||||||||| || Sbjct 31949 TCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCATGATT 31899 >seq14843 Length=30539 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 24382 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 24323 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 24322 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 24288 >seq18382 Length=19407 Score = 116 bits (128), Expect = 2e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTG 6497 ||||| ||||||||||||||||| | || || || ||||||||||| ||||| | || Sbjct 13873 TTTATCCGCAAGTTTGTGCTGTGCCCCGAGTGTGACAACCCGGAGACAGAGCTGCTGGTC 13814 Query 6498 TCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTG 6557 |||||| | |||||||||||||||||| || ||||| | ||| || ||| Sbjct 13813 AGCGCCAAGAAGGGGAACATCTCTCAGGGCTGCAAGGCTTGCGGCTTCCACGGGGCTCTG 13754 Query 6558 GATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || || ||||| || ||||||||||| ||||||||||| || Sbjct 13753 GACTTCAATCACAAGCTGAACACCTTCATCCTGAAGAATCCACC 13710 >seq48539 Length=7100 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||| | ||| | |||||| || || ||| |||||||| ||||||||||| || Sbjct 6485 CCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAG 6426 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || || || || || || || || || | || ||||| | ||| Sbjct 6425 AGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGG 6366 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| ||||||| |||||| || | | ||||| | || || Sbjct 6365 ATACCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACC 6306 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || || || || || ||||||||||||||||| ||||||||||| Sbjct 6305 TCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATGTT 6256 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | || ||| | ||||| ||||| || |||||||||||| ||||| | Sbjct 6945 CATT-CCACCACGCAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGT 6887 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | |||| | || || ||||| ||||| ||||| || | | || ||||| | Sbjct 6886 CCGAAAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTG 6827 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | ||||| ||||| ||| || ||| ||||| | | |||||| || Sbjct 6826 GGGGAATTCCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTT 6767 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| || || || ||||| || || | ||| || || || |||||||| Sbjct 6766 CAACTTCCAAGGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATCTGCAT 6715 >seq1236 Length=109634 Score = 111 bits (122), Expect = 1e-19 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct 32291 TTACTCTCTCTTCAAAGTACTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGACT 32350 Query 20004 CGCGGTAATATTTAGCCTT 20022 || | || ||||||||||| Sbjct 32351 CGTGCTAGTATTTAGCCTT 32369 Score = 96.9 bits (106), Expect = 2e-15 Identities = 68/78 (87%), Gaps = 6/78 (8%) Strand=Plus/Plus Query 25920 GTGGTTTCGCTAGATAGTAGATAGGG------GGTAATCTCGTTAATCCTTTCATGCGCG 25973 || ||||| ||||||||||||||||| || |||||||||||||| |||||||||| Sbjct 22250 GTAGTTTCACTAGATAGTAGATAGGGACAGATGGGAATCTCGTTAATCCATTCATGCGCG 22309 Query 25974 TCACTAATTAGATGACGA 25991 |||||||||||||||||| Sbjct 22310 TCACTAATTAGATGACGA 22327 >seq1190 Length=154610 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| | |||||||||||||||| ||||||||||||||||||||| |||||||||||| | Sbjct 147951 CTCTATTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTC 148010 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 148011 ACTTATATTTAGCCTTA 148027 >seq2424 Length=91058 Score = 102 bits (112), Expect = 5e-17 Identities = 69/78 (88%), Gaps = 6/78 (8%) Strand=Plus/Plus Query 25920 GTGGTTTCGCTAGATAGTAGATAGGG------GGTAATCTCGTTAATCCTTTCATGCGCG 25973 || ||||||||||||||||||||||| || |||||||||||||| |||||||||| Sbjct 4006 GTAGTTTCGCTAGATAGTAGATAGGGACAGATGGGAATCTCGTTAATCCATTCATGCGCG 4065 Query 25974 TCACTAATTAGATGACGA 25991 |||||||||||||||||| Sbjct 4066 TCACTAATTAGATGACGA 4083 >seq1513 Length=104945 Score = 96.9 bits (106), Expect = 2e-15 Identities = 68/78 (87%), Gaps = 6/78 (8%) Strand=Plus/Minus Query 25920 GTGGTTTCGCTAGATAGTAGATAGGG------GGTAATCTCGTTAATCCTTTCATGCGCG 25973 || ||||||||||||||||||||||| || |||||||||||||| |||||||| | Sbjct 90565 GTAGTTTCGCTAGATAGTAGATAGGGACAGATGGGAATCTCGTTAATCCATTCATGCGGG 90506 Query 25974 TCACTAATTAGATGACGA 25991 |||||||||||||||||| Sbjct 90505 TCACTAATTAGATGACGA 90488 >seq8521 Length=40141 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | || | ||| || ||| |||||| || || ||||| || | Sbjct 2475 TACCACCACGCAGACGTAGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGG 2416 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || ||||||||||| || | | || ||||| | || Sbjct 2415 AGAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGGG 2356 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| |||||| ||||| ||| ||||||| | | | || ||||| Sbjct 2355 GGATACCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATACTGTCCGAGGGTTCAA 2296 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | |||||| || || || ||||| || || || || |||||||| Sbjct 2295 CCTCCAGTGTAATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 2247 >seq15643 Length=27379 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| |||| | || | ||| || ||||| ||| |||||| || ||||||||||| || Sbjct 12274 ACCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGA 12215 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | |||| | || || | ||||||||||| || || | | || ||||| | || Sbjct 12214 AAGGGTACGTCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGG 12155 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||||||||| || || || ||||| | || ||| || || || Sbjct 12154 GATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTAC 12095 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || ||||| ||||| | ||| |||||||| |||||||| Sbjct 12094 CTCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 12047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334666207979054