Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_008201.1 Length=34525 Score E Sequences producing significant alignments: (Bits) Value seq14927 122 2e-23 >seq14927 Length=58641 Score = 122 bits (134), Expect = 2e-23 Identities = 340/519 (66%), Gaps = 6/519 (1%) Strand=Plus/Minus Query 460 TAAATTTGATAACCTCTTGACCTAACCACTGATTAAACTCTTTCAATCGCTCTTGCAATG 519 |||| |||| ||||| | || |||||| ||| ||||| || || || || ||||| | Sbjct 45271 TAAACCTGATCACCTCCTCCCCAAACCACGCATTCAACTCCTTGAACCGTTCCTGCAACG 45212 Query 520 GCTCAATCTCGGTGATAAAAAACACCTCGGCAGCATCAGCCACGTTGCCAAAACCGCCGG 579 | | ||| | | |||||||| | || | | || | ||||| || ||| Sbjct 45211 GTGTCAGCTCATTACGGACAAACACCTGCGACGCCTTAACCGAATCACCAAACCCCCCGC 45152 Query 580 TGTTATTTGGGATAATCCCCATCAGTTGTGGTGGCACACGGTGAGCAGCTAACACATCAT 639 |||| | || ||||| ||||||| || ||||| || ||||| || | | ||| | Sbjct 45151 TGTTCTCCGGAATAATACCCATCATCTGCGGTGGAACGCGGTGCGCGCACAGTAAATCGT 45092 Query 640 CACGGCTCACGTTCTTGATATTAAAAAACTCATCTTTTGCCGACACATCAGCAATCGGAA 699 |||| | ||||||||||| || || || ||||| | | || ||| | ||| | Sbjct 45091 TCTGGCTGGCTTTCTTGATATTGAAGAAATCGTCTTTCGTAGCGACTTCACTCAGCGGCA 45032 Query 700 TAATCTGTATTCCATCTTTCTTGCCGTTTGGTGCGTGGACGAACAAGTTTTTAAAATTCC 759 ||||| || || || || ||||| ||||| | | ||||| || || || | Sbjct 45031 AAATCTTGATCCCGTCAGGTTTACCGTTGGGTGCATACATGAACAGATTGCGGAAGTTGC 44972 Query 760 CCACCCCTTTTGACTGCTTGAGCTGC---TGGCGAATATTTTCAACATCTTCTTGTTTTT 816 ||| ||||| | || | | || | | || || | || | || ||| Sbjct 44971 CCAGACCTTTCG--TG-TCGCGCATCGTTTTACGCATCTGATCGATGTCGGAGCTGCTTT 44915 Query 817 GTGACGCATCGCTCATATAAAACACAAAGCCGGCGTGAGCTCCATTTAAAAAATACTTAC 876 ||| ||| ||| |||| || | | | | |||||||| || || || | | ||||| | Sbjct 44914 GTGCCGCGTCGGTCATGTACAGGATATATCCGGCGTGCGCGCCGTTCTGATAGTACTTCC 44855 Query 877 GGCGAAACAGAGTAGCACTCTCATTTAACCACGCAGATTGCAGGGCCGAAAGATATTGTG 936 | ||||| || || ||| |||||| | ||| ||||| | |||||| || |||| | Sbjct 44854 GACGAAAGAGCGTGGCAGCCTCATTCAGCCAGGCAGAATTCAGGGCGCTGAGGTATTCAG 44795 Query 937 GCAAGCCGTAAATATCTTGATTAATATCAGGCTCAAGCA 975 ||| |||||||| || ||||||||||| ||||||| || Sbjct 44794 GCAGGCCGTAAAGCTCCTGATTAATATCCGGCTCAATCA 44756 Score = 118 bits (130), Expect = 2e-22 Identities = 260/387 (67%), Gaps = 12/387 (3%) Strand=Plus/Minus Query 4873 GAGTATGCCAATCTTGACGCACTCGTAATGGACGCCACCGAAGAACTTATTGA--TGAAT 4930 || |||| ||||| ||||| || ||||||||||||||| | || | ||||| || | Sbjct 40810 GACTATGAAAATCTGGACGCGCTGGTAATGGACGCCACCAACGACATGATTGACCCGATT 40751 Query 4931 GGCATCGTGATGACACCGATTTAGTGGTGATTACCGGTCGCAAGTTGCTTGCGGATAAAT 4990 ||| || ||||||| | ||||| || ||| || || |||| ||||| |||| Sbjct 40750 --TATCAGGACGACACCGGCCTGGTGGTTATCTGCGGGCGTCAGCTGCTGGCGGACAAAT 40693 Query 4991 ATTTCCCGATTGTGAATCAGCAAAACGCACCA----ACCGAAGAACTTGCCGCTGATATT 5046 | |||||| | ||||| ||| |||| | | ||| ||||| || ||||| Sbjct 40692 ACTTCCCGCTGGTGAA----CAAGGCGCAGGAGAACTCTGAAAGTCTTGCGGCGGATATG 40637 Query 5047 GTGATCTCACAAAAACGCATTGGGGGCTTAAAAGCGGTGCGTGTGCCGTTCTTCCCGGCG 5106 | ||| || || ||||| || |||| |||||||| || || |||||| || Sbjct 40636 ATTATCAGCCAGAAGCGCATCGGTAACTTACCGGCGGTGCGCGTACCTGCCTTCCCAGCC 40577 Query 5107 AATGCGATTTTAATCACTAAGCTGGAAAATTTAGCCATCTATGTGCAAGAGGGGACAACC 5166 |||||| | | |||||| ||||| ||| | |||| || ||| || || || | Sbjct 40576 AATGCGCTCATGATCACTCGTCTGGATAATCTGTCCATTTACTGGCAGGACGGCACTCAC 40517 Query 5167 CGCAAGCATATTGAGAACGTGCCGAAAAAAGACCGTATTGAAACCTACGAATCAGAAAAT 5226 ||| ||||| || | ||||| || |||||||| |||| ||||||||| ||| Sbjct 40516 CGCCGTCATATCGAAGAGGTGCCAAAGCGTGACCGTATCGAAAACTACGAATCCATCAAT 40457 Query 5227 ATCGACTACGTTGTCGAAGATTATGGC 5253 || | || || ||||||||| || Sbjct 40456 GAAGATTTTGTGGTGGAAGATTATCGC 40430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110268192629996