Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_008201.1
Length=34525
Score E
Sequences producing significant alignments: (Bits) Value
seq14927 122 2e-23
>seq14927
Length=58641
Score = 122 bits (134), Expect = 2e-23
Identities = 340/519 (66%), Gaps = 6/519 (1%)
Strand=Plus/Minus
Query 460 TAAATTTGATAACCTCTTGACCTAACCACTGATTAAACTCTTTCAATCGCTCTTGCAATG 519
|||| |||| ||||| | || |||||| ||| ||||| || || || || ||||| |
Sbjct 45271 TAAACCTGATCACCTCCTCCCCAAACCACGCATTCAACTCCTTGAACCGTTCCTGCAACG 45212
Query 520 GCTCAATCTCGGTGATAAAAAACACCTCGGCAGCATCAGCCACGTTGCCAAAACCGCCGG 579
| | ||| | | |||||||| | || | | || | ||||| || |||
Sbjct 45211 GTGTCAGCTCATTACGGACAAACACCTGCGACGCCTTAACCGAATCACCAAACCCCCCGC 45152
Query 580 TGTTATTTGGGATAATCCCCATCAGTTGTGGTGGCACACGGTGAGCAGCTAACACATCAT 639
|||| | || ||||| ||||||| || ||||| || ||||| || | | ||| |
Sbjct 45151 TGTTCTCCGGAATAATACCCATCATCTGCGGTGGAACGCGGTGCGCGCACAGTAAATCGT 45092
Query 640 CACGGCTCACGTTCTTGATATTAAAAAACTCATCTTTTGCCGACACATCAGCAATCGGAA 699
|||| | ||||||||||| || || || ||||| | | || ||| | ||| |
Sbjct 45091 TCTGGCTGGCTTTCTTGATATTGAAGAAATCGTCTTTCGTAGCGACTTCACTCAGCGGCA 45032
Query 700 TAATCTGTATTCCATCTTTCTTGCCGTTTGGTGCGTGGACGAACAAGTTTTTAAAATTCC 759
||||| || || || || ||||| ||||| | | ||||| || || || |
Sbjct 45031 AAATCTTGATCCCGTCAGGTTTACCGTTGGGTGCATACATGAACAGATTGCGGAAGTTGC 44972
Query 760 CCACCCCTTTTGACTGCTTGAGCTGC---TGGCGAATATTTTCAACATCTTCTTGTTTTT 816
||| ||||| | || | | || | | || || | || | || |||
Sbjct 44971 CCAGACCTTTCG--TG-TCGCGCATCGTTTTACGCATCTGATCGATGTCGGAGCTGCTTT 44915
Query 817 GTGACGCATCGCTCATATAAAACACAAAGCCGGCGTGAGCTCCATTTAAAAAATACTTAC 876
||| ||| ||| |||| || | | | | |||||||| || || || | | ||||| |
Sbjct 44914 GTGCCGCGTCGGTCATGTACAGGATATATCCGGCGTGCGCGCCGTTCTGATAGTACTTCC 44855
Query 877 GGCGAAACAGAGTAGCACTCTCATTTAACCACGCAGATTGCAGGGCCGAAAGATATTGTG 936
| ||||| || || ||| |||||| | ||| ||||| | |||||| || |||| |
Sbjct 44854 GACGAAAGAGCGTGGCAGCCTCATTCAGCCAGGCAGAATTCAGGGCGCTGAGGTATTCAG 44795
Query 937 GCAAGCCGTAAATATCTTGATTAATATCAGGCTCAAGCA 975
||| |||||||| || ||||||||||| ||||||| ||
Sbjct 44794 GCAGGCCGTAAAGCTCCTGATTAATATCCGGCTCAATCA 44756
Score = 118 bits (130), Expect = 2e-22
Identities = 260/387 (67%), Gaps = 12/387 (3%)
Strand=Plus/Minus
Query 4873 GAGTATGCCAATCTTGACGCACTCGTAATGGACGCCACCGAAGAACTTATTGA--TGAAT 4930
|| |||| ||||| ||||| || ||||||||||||||| | || | ||||| || |
Sbjct 40810 GACTATGAAAATCTGGACGCGCTGGTAATGGACGCCACCAACGACATGATTGACCCGATT 40751
Query 4931 GGCATCGTGATGACACCGATTTAGTGGTGATTACCGGTCGCAAGTTGCTTGCGGATAAAT 4990
||| || ||||||| | ||||| || ||| || || |||| ||||| ||||
Sbjct 40750 --TATCAGGACGACACCGGCCTGGTGGTTATCTGCGGGCGTCAGCTGCTGGCGGACAAAT 40693
Query 4991 ATTTCCCGATTGTGAATCAGCAAAACGCACCA----ACCGAAGAACTTGCCGCTGATATT 5046
| |||||| | ||||| ||| |||| | | ||| ||||| || |||||
Sbjct 40692 ACTTCCCGCTGGTGAA----CAAGGCGCAGGAGAACTCTGAAAGTCTTGCGGCGGATATG 40637
Query 5047 GTGATCTCACAAAAACGCATTGGGGGCTTAAAAGCGGTGCGTGTGCCGTTCTTCCCGGCG 5106
| ||| || || ||||| || |||| |||||||| || || |||||| ||
Sbjct 40636 ATTATCAGCCAGAAGCGCATCGGTAACTTACCGGCGGTGCGCGTACCTGCCTTCCCAGCC 40577
Query 5107 AATGCGATTTTAATCACTAAGCTGGAAAATTTAGCCATCTATGTGCAAGAGGGGACAACC 5166
|||||| | | |||||| ||||| ||| | |||| || ||| || || || |
Sbjct 40576 AATGCGCTCATGATCACTCGTCTGGATAATCTGTCCATTTACTGGCAGGACGGCACTCAC 40517
Query 5167 CGCAAGCATATTGAGAACGTGCCGAAAAAAGACCGTATTGAAACCTACGAATCAGAAAAT 5226
||| ||||| || | ||||| || |||||||| |||| ||||||||| |||
Sbjct 40516 CGCCGTCATATCGAAGAGGTGCCAAAGCGTGACCGTATCGAAAACTACGAATCCATCAAT 40457
Query 5227 ATCGACTACGTTGTCGAAGATTATGGC 5253
|| | || || ||||||||| ||
Sbjct 40456 GAAGATTTTGTGGTGGAAGATTATCGC 40430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 110268192629996
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |