Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq742 329 4e-85 seq6691 143 3e-29 >seq742 Length=196864 Score = 329 bits (364), Expect = 4e-85 Identities = 1172/1809 (65%), Gaps = 41/1809 (2%) Strand=Plus/Minus Query 61889 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 61948 || |||||||| || || | || | |||| || || || || ||| || || || Sbjct 48873 TAATACATTCCAGTCTTCAAGCCCATCTTCCAGCCATAGAAGTGGATAGAAGTGAGCTTT 48814 Query 61949 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 62008 || | || ||||| | || || || | || |||||||| || || |||||||| Sbjct 48813 CCGTAGTTGGGCTCTGCCACGTGTATGTTGAAGGACTGACTTTGGTCAATAAAGGCTCCT 48754 Query 62009 CTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGG--AATTTCCCAAATAGTTTTATAAA 62066 | ||| || ||||| || || | || |||||| | ||||||||||| || || || | Sbjct 48753 CGGTCGGCTGCCATCTTGATCA--GTATTTTGTTGGAAATTTCCCAAACTGTCTTGTAGA 48696 Query 62067 C-TCGCTTAATATCTTCTGGAAGGTTTGTA--TTCTGAATGGATCCACCATCTGCCATAA 62123 || || | ||| | | | | | || ||||||||||| | || || | Sbjct 48695 GATCTCTGATGTGCTTGGGTATTCTGTCCAGGTTTTGAATGGATCCGTTGTTGGCAATGA 48636 Query 62124 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62183 | ||| || || || || | ||| || | |||||| ||| | | || ||||| Sbjct 48635 TGAGATTTTTCATGTCGTCGTCCCACAAATCAGCCTCGGTCAAATCACGCAGTAGATGGT 48576 Query 62184 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62243 |||| || || || |||||||||||||| || || | ||||| || || || | | Sbjct 48575 GATTCACAACCTGGAATTCTCCAGACAAGACCCTTCTGGTGTAGATGTTGGAAGTGAAGG 48516 Query 62244 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62303 |||| | || || || ||||| ||||| || || || || || || ||||| ||||| | Sbjct 48515 GTTCAAAGGATTCGTTGTTTCCTAAAATCTGGGCGGTGGAGGCGGTAGGCATGGGTGCGA 48456 Query 62304 CCAATAAACTATTTC-TAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTC 62362 || | | | ||| | | |||| | | ||| ||| |||| | | |||| ||| Sbjct 48455 G-AAGCAGCGAGTTCCTGACTCCGTGTATCGCGATCTTAGCTTTCAAGGCAGCCCAGTTC 48397 Query 62363 CAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTA 62421 || | ||| | || ||| ||||| || || ||| | | | Sbjct 48396 CACAAATCTGTAGGCTTCTTGTCCCACATCTCATATTGAAGAATCCCTTTGCTGACAGGA 48337 Query 62422 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 62481 | ||||| || || ||||||| || |||||||| || || || ||||| || || | Sbjct 48336 C-ATCCTGGGTACGTCTCGTATGTACCCTCCTTCTCGGCCAGCTCGCAACTTGCTTCCAG 48278 Query 62482 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATC 62541 ||||||||||| | || || || || | | ||| ||| || |||| || || Sbjct 48277 AGCACCGTAATACAATGTCTCAAATATTTGTTGATTCAGAAGCTGGGCTTTTTCACTCTC 48218 Query 62542 AAATGGATAAT----TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGA 62597 ||| || ||| |||||| || | || ||||| | ||||| | |||||||||| Sbjct 48217 AAAAGGC-AATCTCATTAAGACAAAA---GCATCTGCCAGGCCTTGTATTCCAATACCGA 48162 Query 62598 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 62657 | || | || | | | || || || ||||||||| | ||| ||| | |||| || | Sbjct 48161 TGGGGCGGTGACGCATGTTCGATGTTCTAGCTTCTGGTACAGGGTAAAAGTTAACGTCGA 48102 Query 62658 TAATTTTATTGAGATTT---CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT 62714 ||||||| || | |||| ||||| | ||| || |||||| || ||| | Sbjct 48101 TAATTTTGTTCAAATTTTTAGTGACAGT---CTTGGTTACGATCTTCAGCTTTTCAAAGT 48045 Query 62715 CAAATCGCCCATCTAT-TACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCT 62773 | ||| | || ||| ||||||||| || | || | ||| |||| ||| || || ||| Sbjct 48044 CGAATACCTTAT-TATCTACAAACATATTGACAGCGATAGAGGCCAAATTGCAGACAGCT 47986 Query 62774 ACCTCA--TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGG 62831 || ||| || | | | |||| | ||| || ||||| || ||||| ||||| || | Sbjct 47985 ACTTCATCTTTGGA--AGTGTATTCAACTATTTCTGTGCAGAGGTTACTGCACTTAATAG 47928 Query 62832 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAG 62891 |||| | ||||||||| || |||||| ||| ||||| ||||| || || ||| | || | Sbjct 47927 TTCCCAGATTTTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGTACAGCATGTAGGGGG 47868 Query 62892 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA-GACGACTCGAGCCTTTATTATA 62950 | || ||||| | |||||||| || || || |||| | | || | ||||| || | Sbjct 47867 TTCCCGTTTCTACTTGAGATTCGATGATGGCCATCCACAAAGTCT-GCGCCTTGATCTTC 47809 Query 62951 GATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAA 63010 || | | ||| |||||| |||| |||| || || || |||||||| Sbjct 47808 TTCTTAGAACGACCTTCGGCTTCGTAGCGTGTGTACAGAGCCTCAAATTCTTCTCCCCAG 47749 Query 63011 ACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 63070 | || | || ||| || | || ||||| | ||| || ||| || Sbjct 47748 CACTCGTGTAAGCCGGGAGCATCGTGGGGGCACATGAGACTCCAATCCTCGTTGCTCTCG 47689 Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 63129 || || ||||| || ||||| || ||||| | ||| || |||| || | | | | Sbjct 47688 ACACGCTTCATGAACAGATCGGGGATCCACA-AGCCGTAGAATAAGTCACGTGCACGAAC 47630 Query 63130 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 |||||| ||||| ||||||||||| | || | ||| | | || || | |||||||| Sbjct 47629 TTCCTCCTTTCCAGTATTCTTTTTCAAGTCTAAGAATTCAAATATGTCCGCGTGCCACGG 47570 Query 63190 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63249 || | ||| || || | | |||| |||| |||||||||||||| |||| || | || Sbjct 47569 CTCAACGTAAATAGCGAAAGCTCCGGGCCTCTTGTTTCCTCCCTGGTCTACATAGCGGGC 47510 Query 63250 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGA 63309 |||||||| || || | || ||| || | | |||||||| || || || || | Sbjct 47509 CGTGTTATTGTACACACGCAGCATGGGGACCAACCCATTGGAGACTCCGTTAGTACCCGC 47450 Query 63310 GATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATT 63367 ||| ||| || |||| || || | | || ||| || || || || || || Sbjct 47449 GATGTAGGAACCCTTGGCTCGGATGCAGT-GTACATGA-AGGCCGATACCTCCAGCAGAC 47392 Query 63368 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 63427 || || | | || || | || | || || ||||| || || ||||||||||| || Sbjct 47391 TTGGAAACCAGGGCACACTGCTTCAGGGTGTCGTAGATCCCTTCAATACTATCATCGCTC 47332 Query 63428 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 63487 ||| ||||| || || ||||| || |||| || | || |||| ||| Sbjct 47331 ATGGCCAGTAGGAAGCAAGAAGACAGCTGAGGACGGGGCGTGGCTGCGGAGAATAGAGTA 47272 Query 63488 GGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63547 || |||||||| || |||| || || || || ||||| || ||||| ||||| || Sbjct 47271 GGGCTGGCGTGAGTGAAGTATTTCTCTGACAGAAGGTTGTAAGTTTCAATGGCTGAATCA 47212 Query 63548 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 63607 || || || || || || | || | ||| | |||||| || |||||||| || Sbjct 47211 ATGTCTTCCCCGTGGATACCGACAGATACCCTCATGAGCATGTGTTGCGGTCTTTCTACA 47152 Query 63608 ATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 63667 | || | || |||| || || || ||||| |||||||| ||||| ||||| Sbjct 47151 ACTTTCCCTTCGATCTTCAGCAGATATGAGCGCTCCAAGGTTTTAAATCCAAAGTAGTTA 47092 Query 63668 TA--TGAAA 63674 || ||||| Sbjct 47091 TAATTGAAA 47083 >seq6691 Length=42033 Score = 143 bits (158), Expect = 3e-29 Identities = 279/410 (68%), Gaps = 3/410 (1%) Strand=Plus/Plus Query 32496 TCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 32555 || || |||||||| ||||| ||||| || || ||||| || | ||| | || Sbjct 14045 TCGGCCACAAATTCAATATACTGCGACATCAGGTCGCAGTTCATGCCCAGTAGTCTGACG 14104 Query 32556 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTT 32615 || || || | || ||||| ||||||||||| ||| || || | | |||| | Sbjct 14105 GGCAGGGCGTCGGTGAGAAACTCTTGTTCAATGATGACAGCATCCTTGACGATAGCTAGG 14164 Query 32616 ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAG 32675 ||| | | || ||| | | ||| ||||| ||||| | || || || |||||| Sbjct 14165 ACTCGTGCGGGGCTGGGTTTCTGTACTAAGTGTTTGAACATGAGGCAGGCAAAGTCGCAG 14224 Query 32676 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 32735 || ||||||||||||| || || |||||| || || | |||||||| |||||| Sbjct 14225 TGGAGACCCTCGTCTCGGGAGATCAACTCGTTGCTGAAGGTCAAGCCGGGCATGAGGCCA 14284 Query 32736 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 32795 ||||| || |||||||| ||||| ||||| || || ||||| ||||||||||| Sbjct 14285 CGCTTCTTCAGCCAAAAGATGGAGGCAAAACTGCCGGAGAAGAAGATTCCTTCTACGCAA 14344 Query 32796 GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC-ATG--TATCCACTTTTGAGCC 32852 || ||||| | | | ||| || | ||| |||| || ||||||| | ||| Sbjct 14345 GCGAAGGCCACCACACGCTCCCCGAAGGTGGCCGTGTCGCTGCCGATCCACTGCAGGGCC 14404 Query 32853 CAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 || || |||||||| || ||||| || | ||||| | ||| || || || Sbjct 14405 CAGTCTGCCTTCTTCTTCACACACGGTAGGGTCTCCACAGCGTTGAAAAG 14454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633086807186400