Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq223 241 1e-58
seq8056 138 1e-27
seq15643 114 1e-20
seq48539 111 1e-19
seq8521 109 5e-19
>seq223
Length=511576
Score = 241 bits (266), Expect = 1e-58
Identities = 387/554 (70%), Gaps = 3/554 (1%)
Strand=Plus/Plus
Query 57609 CAAATCTTTCAATAGCCGCACGTATGTTTCTCCGTCGCGACCAGGGTCGCCCAACAAAGG 57668
|| |||||||| ||| |||| || || || || || || | | | ||||| | ||
Sbjct 113428 CAGATCTTTCATCAGCTGCACATAGGTATCACCATC-CGCC--GTGCTGCCCAGCGCCGG 113484
Query 57669 ATTAGCACCATTACCACCAGGAAATTCCCAATCAATGTCGACTCCATCAAAAAATTTCCA 57728
|| |||| ||| || ||||||||||| ||||| || || || ||||| || |||||
Sbjct 113485 GTTTTCACCGCCACCGCCCGGAAATTCCCAGTCAATATCCACACCGTCAAAGAACTTCCA 113544
Query 57729 CACTTTGATGTAGTCGCGCACCGATTGCACAAAAGTGTTGCGAATAGTGTCGTCGTGCAT 57788
|| | | | || ||||| || || || || | | | || | |||
Sbjct 113545 GGTTTGCAGGAATTCTTTTACCGAGGCTACGAAGACGTCCCGCTTCGCCTTATCCTTCAT 113604
Query 57789 GAAAAAGAAGGGATCCGATAAGGTCCAACCACCAATGGATGGCAATACTTTTAGATGCGG 57848
|||| |||| || || || || ||||| ||||| ||||| || | | ||| || | ||
Sbjct 113605 GAAATAGAACGGGTCTGACAACGTCCAGCCACCGATGGAAGGGACAATTTTCAGGTTTGG 113664
Query 57849 ATATGCTTTTTTGACCGCCATCAGTTGACCAAAATTACCTTTGTAAGGTTCGTTCCAAGC 57908
||| |||||||| | ||||||||| ||||||||||||||||| |||||| | | |
Sbjct 113665 ATAGGCTTTTTTCAGCGCCATCAGCTGACCAAAATTACCTTTATAAGGTGCTGAATATTC 113724
Query 57909 CGATACTCCTTGTTGAGGCTTTTGTAGCGCCGCCCAAGGATCGTGTATCGTTACTTTGAA 57968
|| ||||| |||||| | || | ||| ||||| ||||||||||||| ||||| ||
Sbjct 113725 ACTGACGCCTTGCTGAGGCATCTGCACCGCAGCCCAGGGATCGTGTATCGCAACTTTAAA 113784
Query 57969 ATCTTCTCGGCCTGCACACGAACGTTGCAACGCTTCAAAACTACCTGTAATCGTCTTTAG 58028
||| | || || ||||| | |||||||| || | |||||| || ||| | ||||
Sbjct 113785 ATCCTGACGCCCCGCACAGGCGCGTTGCAAGGCCTGAAAACTGCCCTCAATGCTTTTTAA 113844
Query 58029 ACTGTCGTTGATGCCATCGCCTCCGCAAATAGGCACGAAACCGTACAACAAATGAGTCAA 58088
||||||||| || || || || |||||||| ||| ||| |||||||| | ||| ||||
Sbjct 113845 ACTGTCGTTAATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGTACAAGATATGTGTCAG 113904
Query 58089 ATTGGGTACGGGTACTTTATCAACTGGATATTTACGACCGTACACACTCCACTCCACGAA 58148
|| | | || | |||||| || | || ||||| ||||| | |||||| || ||
Sbjct 113905 GTTCTGCGCAGGGATTTTATCCACGGAGAATCCGCGACCATACACGCCCCACTCAACAAA 113964
Query 58149 ATAAGCTCCCACGA 58162
||| || || ||||
Sbjct 113965 ATATGCGCCAACGA 113978
>seq8056
Length=34938
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || ||||||||||| || | |||||| | || || ||| | ||
Sbjct 31903 ATGCAGATTTTCGTGAAAACTTTGACCGGAAAGACGATCACATTGGAGGTTGAGCCCTCA 31962
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || ||||| | || || |||| ||| ||||||||||| ||||| || || ||
Sbjct 31963 GATACGATCGAAAATGTAAAGGCGAAAATTCA-AGACAAAGAAGGAATTCCTCCGGATCA 32021
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || |||| || || || |||||||||||||||| |||||| | |||||||||
Sbjct 32022 ACAACGTCTTATCTTCGCTGGAAAACAATTAGAAGATGGTCGCACCCTTTCCGATTACAA 32081
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||| || || || || || || ||||| ||||| | || |||||||
Sbjct 32082 TATCCAGAAGGAGTCGACCCTCCATTTGGTGCTCCGTCTCCGAGGAGG 32129
>seq15643
Length=27379
Score = 114 bits (126), Expect = 1e-20
Identities = 167/234 (71%), Gaps = 8/234 (3%)
Strand=Plus/Plus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|||||||| || || || ||||| | || || ||| ||||||| | || || ||| |
Sbjct 12044 ACAATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACCCTTGAGGTAGAGCCC 12103
Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111
|||||||||||||| |||| |||| || | || ||||||||||| || || ||
Sbjct 12104 TCTGACACTATCGAAAATGTCA---AAGCCAAGATCCAA-GACAAAGAAGGAATCCCTCC 12159
Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171
|| || ||| || | || || ||||| ||||| | || |||| || || | ||
Sbjct 12160 AGATCAGCAGAGGTTGATCTTCGCCGGAAAACAGCTCGAGGATGGACGTACCCTTTCAGA 12219
Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||||||| || || || ||||| || || |||||||| | || |||||||
Sbjct 12220 TTACAATATCCAGAAGGAGTCCACACTTCACTTAGTGCTTCGACTCCGAGGAGG 12273
>seq48539
Length=7100
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || ||||| || || | || || | || |||||| | ||
Sbjct 6259 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATAACTTTGGAGGTGGAGCCTTCC 6318
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || || ||||| |||||| ||| ||||||||||| || || || || ||
Sbjct 6319 GATACGATTGAAAACGTGAAGGCAAAAATTCAA-GACAAAGAAGGTATCCCTCCAGATCA 6377
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | ||||| || ||||| || || ||||| | || || | |||||||||
Sbjct 6378 GCAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGACGGCCGAACCCTCTCCGATTACAA 6437
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||| ||||| |||||||| || || || ||||| | || |||||||
Sbjct 6438 TATCCAAAAGGAATCCACCCTCCACTTGGTGCTCCGTCTCCGAGGAGG 6485
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/216 (70%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || |||||||| | ||||| || | || || | ||||| ||| | |||
Sbjct 6487 ATGCAGATCTTCGTAAAGACCCTTACCGGAAAGACTATTACTCTAGAAGTTGAGCCTTCT 6546
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| || || |||| |||| || | || ||||| ||||| || || || ||
Sbjct 6547 GACACAATTGAAAATGTCA---AAGCCAAGATCCAA-GACAAGGAAGGAATCCCTCCAGA 6602
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||| || | || || || || || || || || |||| ||||| | ||| ||
Sbjct 6603 TCAGCAGAGGTTGATCTTCGCAGGAAAGCAGTTGGAGGATGGACGCACCCTTTCCGACTA 6662
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||| ||||||||||| || || || || || ||
Sbjct 6663 CAATATCCAAAAAGAATCTACCCTTCACTTGGTCCT 6698
>seq8521
Length=40141
Score = 109 bits (120), Expect = 5e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||||||||||| || |||| ||| | || || || | ||
Sbjct 2247 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATTACACTGGAGGTTGAACCCTCG 2306
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|||| ||| ||| | ||| |||||| ||||| ||||| || || || || ||
Sbjct 2307 GACAGTATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGTATCCCCCCAGATCAG 2366
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || |||||||| || || | ||||||| |||||| | ||| |||||
Sbjct 2367 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 2426
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211
|| || || || ||||| || ||| | || |||
Sbjct 2427 ATCCAGAAGGAGTCCACACTCCATCTTGTCCTA 2459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 432964474911710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |