Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq223 241 1e-58 seq8056 138 1e-27 seq15643 114 1e-20 seq48539 111 1e-19 seq8521 109 5e-19 >seq223 Length=511576 Score = 241 bits (266), Expect = 1e-58 Identities = 387/554 (70%), Gaps = 3/554 (1%) Strand=Plus/Plus Query 57609 CAAATCTTTCAATAGCCGCACGTATGTTTCTCCGTCGCGACCAGGGTCGCCCAACAAAGG 57668 || |||||||| ||| |||| || || || || || || | | | ||||| | || Sbjct 113428 CAGATCTTTCATCAGCTGCACATAGGTATCACCATC-CGCC--GTGCTGCCCAGCGCCGG 113484 Query 57669 ATTAGCACCATTACCACCAGGAAATTCCCAATCAATGTCGACTCCATCAAAAAATTTCCA 57728 || |||| ||| || ||||||||||| ||||| || || || ||||| || ||||| Sbjct 113485 GTTTTCACCGCCACCGCCCGGAAATTCCCAGTCAATATCCACACCGTCAAAGAACTTCCA 113544 Query 57729 CACTTTGATGTAGTCGCGCACCGATTGCACAAAAGTGTTGCGAATAGTGTCGTCGTGCAT 57788 || | | | || ||||| || || || || | | | || | ||| Sbjct 113545 GGTTTGCAGGAATTCTTTTACCGAGGCTACGAAGACGTCCCGCTTCGCCTTATCCTTCAT 113604 Query 57789 GAAAAAGAAGGGATCCGATAAGGTCCAACCACCAATGGATGGCAATACTTTTAGATGCGG 57848 |||| |||| || || || || ||||| ||||| ||||| || | | ||| || | || Sbjct 113605 GAAATAGAACGGGTCTGACAACGTCCAGCCACCGATGGAAGGGACAATTTTCAGGTTTGG 113664 Query 57849 ATATGCTTTTTTGACCGCCATCAGTTGACCAAAATTACCTTTGTAAGGTTCGTTCCAAGC 57908 ||| |||||||| | ||||||||| ||||||||||||||||| |||||| | | | Sbjct 113665 ATAGGCTTTTTTCAGCGCCATCAGCTGACCAAAATTACCTTTATAAGGTGCTGAATATTC 113724 Query 57909 CGATACTCCTTGTTGAGGCTTTTGTAGCGCCGCCCAAGGATCGTGTATCGTTACTTTGAA 57968 || ||||| |||||| | || | ||| ||||| ||||||||||||| ||||| || Sbjct 113725 ACTGACGCCTTGCTGAGGCATCTGCACCGCAGCCCAGGGATCGTGTATCGCAACTTTAAA 113784 Query 57969 ATCTTCTCGGCCTGCACACGAACGTTGCAACGCTTCAAAACTACCTGTAATCGTCTTTAG 58028 ||| | || || ||||| | |||||||| || | |||||| || ||| | |||| Sbjct 113785 ATCCTGACGCCCCGCACAGGCGCGTTGCAAGGCCTGAAAACTGCCCTCAATGCTTTTTAA 113844 Query 58029 ACTGTCGTTGATGCCATCGCCTCCGCAAATAGGCACGAAACCGTACAACAAATGAGTCAA 58088 ||||||||| || || || || |||||||| ||| ||| |||||||| | ||| |||| Sbjct 113845 ACTGTCGTTAATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGTACAAGATATGTGTCAG 113904 Query 58089 ATTGGGTACGGGTACTTTATCAACTGGATATTTACGACCGTACACACTCCACTCCACGAA 58148 || | | || | |||||| || | || ||||| ||||| | |||||| || || Sbjct 113905 GTTCTGCGCAGGGATTTTATCCACGGAGAATCCGCGACCATACACGCCCCACTCAACAAA 113964 Query 58149 ATAAGCTCCCACGA 58162 ||| || || |||| Sbjct 113965 ATATGCGCCAACGA 113978 >seq8056 Length=34938 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||||||||||| || | |||||| | || || ||| | || Sbjct 31903 ATGCAGATTTTCGTGAAAACTTTGACCGGAAAGACGATCACATTGGAGGTTGAGCCCTCA 31962 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | || || |||| ||| ||||||||||| ||||| || || || Sbjct 31963 GATACGATCGAAAATGTAAAGGCGAAAATTCA-AGACAAAGAAGGAATTCCTCCGGATCA 32021 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| || || || |||||||||||||||| |||||| | ||||||||| Sbjct 32022 ACAACGTCTTATCTTCGCTGGAAAACAATTAGAAGATGGTCGCACCCTTTCCGATTACAA 32081 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || || || || || ||||| ||||| | || ||||||| Sbjct 32082 TATCCAGAAGGAGTCGACCCTCCATTTGGTGCTCCGTCTCCGAGGAGG 32129 >seq15643 Length=27379 Score = 114 bits (126), Expect = 1e-20 Identities = 167/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || || || ||||| | || || ||| ||||||| | || || ||| | Sbjct 12044 ACAATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACCCTTGAGGTAGAGCCC 12103 Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 |||||||||||||| |||| |||| || | || ||||||||||| || || || Sbjct 12104 TCTGACACTATCGAAAATGTCA---AAGCCAAGATCCAA-GACAAAGAAGGAATCCCTCC 12159 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || || ||| || | || || ||||| ||||| | || |||| || || | || Sbjct 12160 AGATCAGCAGAGGTTGATCTTCGCCGGAAAACAGCTCGAGGATGGACGTACCCTTTCAGA 12219 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||| || || || ||||| || || |||||||| | || ||||||| Sbjct 12220 TTACAATATCCAGAAGGAGTCCACACTTCACTTAGTGCTTCGACTCCGAGGAGG 12273 >seq48539 Length=7100 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||| || || | || || | || |||||| | || Sbjct 6259 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATAACTTTGGAGGTGGAGCCTTCC 6318 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| |||||| ||| ||||||||||| || || || || || Sbjct 6319 GATACGATTGAAAACGTGAAGGCAAAAATTCAA-GACAAAGAAGGTATCCCTCCAGATCA 6377 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | ||||| || ||||| || || ||||| | || || | ||||||||| Sbjct 6378 GCAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGACGGCCGAACCCTCTCCGATTACAA 6437 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||| |||||||| || || || ||||| | || ||||||| Sbjct 6438 TATCCAAAAGGAATCCACCCTCCACTTGGTGCTCCGTCTCCGAGGAGG 6485 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || |||||||| | ||||| || | || || | ||||| ||| | ||| Sbjct 6487 ATGCAGATCTTCGTAAAGACCCTTACCGGAAAGACTATTACTCTAGAAGTTGAGCCTTCT 6546 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| || | || ||||| ||||| || || || || Sbjct 6547 GACACAATTGAAAATGTCA---AAGCCAAGATCCAA-GACAAGGAAGGAATCCCTCCAGA 6602 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| || | || || || || || || || || |||| ||||| | ||| || Sbjct 6603 TCAGCAGAGGTTGATCTTCGCAGGAAAGCAGTTGGAGGATGGACGCACCCTTTCCGACTA 6662 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| ||||||||||| || || || || || || Sbjct 6663 CAATATCCAAAAAGAATCTACCCTTCACTTGGTCCT 6698 >seq8521 Length=40141 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||||||||| || |||| ||| | || || || | || Sbjct 2247 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATTACACTGGAGGTTGAACCCTCG 2306 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||| ||| ||| | ||| |||||| ||||| ||||| || || || || || Sbjct 2307 GACAGTATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGTATCCCCCCAGATCAG 2366 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| || || | ||||||| |||||| | ||| ||||| Sbjct 2367 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 2426 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || || || || ||||| || ||| | || ||| Sbjct 2427 ATCCAGAAGGAGTCCACACTCCATCTTGTCCTA 2459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432964474911710