Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq223 196 5e-45 >seq223 Length=511576 Score = 196 bits (216), Expect = 5e-45 Identities = 449/661 (68%), Gaps = 15/661 (2%) Strand=Plus/Plus Query 51882 AGCATGTCGCGCAGCTCGGTCAAAAGCGTCACGTACGTCGCACCATCGCGATCGGGATCG 51941 ||||| | ||||| || ||| ||| ||| || || ||||||| || || | | | Sbjct 113417 AGCATCGCCCGCAGATCTTTCATCAGCTGCACATAGGTATCACCATC-CGC-CGTGCT-G 113473 Query 51942 CCCAGGTCGGGATTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCGACGTCGACTCCGTCG 52001 ||||| | || || | || ||||||||||| |||||||| | || || ||||| Sbjct 113474 CCCAGCGCCGGGTTTTCACCGCCACCGCCCGGAAATTCCCAGTCAATATCCACACCGTCA 113533 Query 52002 AAGAACTTCCAAGTCAGCAGAAACTCGCGAACCGATTCGACGAAG--GTTGCGCGTTTGC 52059 ||||||||||| || |||| || || ||||| | |||||| || ||| || || Sbjct 113534 AAGAACTTCCAGGTTTGCAGGAATTCTTTTACCGAGGCTACGAAGACGTCCCGC-TTCGC 113592 Query 52060 TCGCGTCGTGCAGGAAGAAGAACGGATCGGACAGCGTCCAACCGCCGATCGAGGGCAGAA 52119 | || | || ||| ||||||| || |||| |||||| || ||||| || || | || Sbjct 113593 -CTTATCCTTCATGAAATAGAACGGGTCTGACAACGTCCAGCCACCGATGGAAGGGACAA 113651 Query 52120 TCTTGAGCGAAGGATTGGCCCGTTTGGCCGCCATCAGCTGTCCAAAGTTTCCCTTGTACG 52179 | || || |||| ||| ||| |||||||||||| ||||| || || || || | Sbjct 113652 TTTTCAGGTTTGGATAGGCTTTTTTCAGCGCCATCAGCTGACCAAAATTACCTTTATAAG 113711 Query 52180 GATCGTTCCAGGCCGAGACGCCTTTCTGCGGTTTCTGCAGCGCCGCCCAGGGATCGTGAA 52239 | | | | |||||||| ||| || |||||| ||| |||||||||||||| | Sbjct 113712 GTGCTGAATATTCACTGACGCCTTGCTGAGGCATCTGCACCGCAGCCCAGGGATCGTGTA 113771 Query 52240 TCGTCACCTTAAAGTCC-GACCTGCCCACGCAC--GACCGTTGCAACGCTTCGAAACTGT 52296 ||| || ||||| ||| ||| |||| ||||| | |||||||| || | |||||| Sbjct 113772 TCGCAACTTTAAAATCCTGAC--GCCC-CGCACAGGCGCGTTGCAAGGCCTGAAAACTGC 113828 Query 52297 TGTCGATCGGTTTCAGGCTGTCGTTGATGCCGTCGCCTCCGCACATGGGAATGAAGCCGT 52356 || || ||| | |||||||| || ||||| || ||||| || || ||||||||| Sbjct 113829 CCTCAATGCTTTTTAAACTGTCGTTAATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGT 113888 Query 52357 ACAGCAGATGCGACAGGTTCGGCAACGGCACCAGATCTACGGGAAAGTTGCGCAAGTAAA 52416 ||| | ||| | ||||||| || || | ||| |||| || ||| || | Sbjct 113889 ACAAGATATGTGTCAGGTTCTGCGCAGGGATTTTATCCACGGAGAATCCGCGACCATACA 113948 Query 52417 CGCCCCATTCGACAAAGTAGGCCGCTTTCACGGTGCCCGACGTGTCGACGTAGGGCAGAT 52476 ||||||| || ||||| || || | || |||| ||| ||| | || ||| | | Sbjct 113949 CGCCCCACTCAACAAAATATGCGCCAACGACCTTGCCAGACTTGTTGTTATAAGGCTGGT 114008 Query 52477 TGTTTTCGCGCCAC-TCGTAGTTGAGGGCGGCCAGATGGCTACCGTCCGTGTCGGCCACC 52535 | ||||| | | | | ||| | || | |||||| || ||||| || || |||||| Sbjct 114009 TATTTTCCTTCAGCGTGCTGGTTAACGGTAG-CAGATGACTGCCGTCGGTATCTGCCACC 114067 Query 52536 A 52536 | Sbjct 114068 A 114068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537140632766640