Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4196 129 7e-25 seq15411 113 5e-20 seq3172 113 5e-20 seq17790 98.7 1e-15 >seq4196 Length=93956 Score = 129 bits (142), Expect = 7e-25 Identities = 80/85 (94%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 20160 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAAAGGGAGCG 20101 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 20100 TGGGTTCGAACCCCACACCTGACAA 20076 >seq15411 Length=31577 Score = 113 bits (124), Expect = 5e-20 Identities = 76/84 (90%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||| Sbjct 18401 GTCAGATTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGGGAGCG 18460 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 18461 TGGGTTCGAACCCCACATCTGACA 18484 >seq3172 Length=332518 Score = 113 bits (124), Expect = 5e-20 Identities = 77/86 (90%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||| ||||||||||||||||||||||||| |||||| |||||||| | ||||||| Sbjct 288068 GTCAGATTGGCCGAGTGGTCTAAGGCGCCAGGTTTAAGTTCTGGTTCTCGAAAGGGAGCG 288127 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||| |||||||| Sbjct 288128 TGGGTTCGAACCCCACATCTGACAAA 288153 >seq17790 Length=19052 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/83 (87%), Gaps = 7/83 (8%) Strand=Plus/Plus Query 126267 TCAGGTTGGCCGAGTGGTCTAA-----GGCGCCAGATTTAAGATCTGGTTCCC--TCGGG 126319 ||||||| ||||||||||||| ||||||||||||||| |||||||||| ||||| Sbjct 14054 TCAGGTTAGCCGAGTGGTCTACTGCGCGGCGCCAGATTTAAGCTCTGGTTCCCAATCGGG 14113 Query 126320 AGCGTGGGTTCGAACCCCACACC 126342 |||||||||||||||||||||| Sbjct 14114 GGCGTGGGTTCGAACCCCACACC 14136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556381663046160