Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq223 219 4e-52 seq742 203 3e-47 seq8056 143 2e-29 seq48539 127 2e-24 seq8521 87.8 2e-12 >seq223 Length=511576 Score = 219 bits (242), Expect = 4e-52 Identities = 340/486 (70%), Gaps = 0/486 (0%) Strand=Plus/Plus Query 49224 CCGCCCGGAAATTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCAAGTTAACAAAAAT 49283 ||||||||||||||||| || || || || ||||| || || ||||| ||| || ||| Sbjct 113498 CCGCCCGGAAATTCCCAGTCAATATCCACACCGTCAAAGAACTTCCAGGTTTGCAGGAAT 113557 Query 49284 TCGCGCACCGAATCTACAAACACGTCACGTTTATGCGCATCGTGCATAAAGTAAAATGGA 49343 || ||||| |||| || ||||| || || | ||| | ||| || || || || Sbjct 113558 TCTTTTACCGAGGCTACGAAGACGTCCCGCTTCGCCTTATCCTTCATGAAATAGAACGGG 113617 Query 49344 TCGGACAACGTCCAACCCCCGATGGATGGCAATACTTTTAAATTGGGATTTGCTTTTTTA 49403 || ||||||||||| || |||||||| || | | ||| | || |||| |||||||| Sbjct 113618 TCTGACAACGTCCAGCCACCGATGGAAGGGACAATTTTCAGGTTTGGATAGGCTTTTTTC 113677 Query 49404 ATTGCCATCAATTGACCGAAATTGCCTTTGTACGGTTCGTTCCAAGCGGACACACCTTTT 49463 | ||||||| ||||| ||||| ||||| || ||| | | | || |||| Sbjct 113678 AGCGCCATCAGCTGACCAAAATTACCTTTATAAGGTGCTGAATATTCACTGACGCCTTGC 113737 Query 49464 TGGGGTTTTTGCAGCGCAGCCCACGGATCGTGAATAGACACTTTGAAATCGTCCCGGCCA 49523 || || | |||| ||||||||| |||||||| || | ||||| ||||| | || || Sbjct 113738 TGAGGCATCTGCACCGCAGCCCAGGGATCGTGTATCGCAACTTTAAAATCCTGACGCCCC 113797 Query 49524 GCGCAACTTTTTTGTAATGCCTCAAAACTGCCCGTTATCGTTTTCAAACTGTCGTTAATG 49583 || || ||| || |||| |||||||||| || |||| |||||||||||||| Sbjct 113798 GCACAGGCGCGTTGCAAGGCCTGAAAACTGCCCTCAATGCTTTTTAAACTGTCGTTAATC 113857 Query 49584 CCGTCGCCCCCGCAAATTGGCACGAAACCGTACAGCAGATGCGATAGATTTGGTGCGGGT 49643 ||||| || |||||||| ||| ||| ||||||| | ||| | || || | || || Sbjct 113858 CCGTCCCCGCCGCAAATCGGCGTGAAGCCGTACAAGATATGTGTCAGGTTCTGCGCAGGG 113917 Query 49644 ACGCGATCGGCGGGAAACGATCGACCGTACACACCCCACTCGACAAAGTACGCAGCGACA 49703 | ||| ||| || ||||| ||||| |||||||| ||||| || || | || Sbjct 113918 ATTTTATCCACGGAGAATCCGCGACCATACACGCCCCACTCAACAAAATATGCGCCAACG 113977 Query 49704 ACTTTG 49709 || ||| Sbjct 113978 ACCTTG 113983 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/135 (74%), Gaps = 8/135 (6%) Strand=Plus/Plus Query 48525 TGCATAGCATTCAACAAATCGCCATTGTCAGCGTCGATTTCCCATGCAAAGAGGCCTCCT 48584 ||||| |||||||| | |||||| || || ||||||||||||||||| || ||||| || Sbjct 112767 TGCATGGCATTCAAAATATCGCCGTTATCTGCGTCGATTTCCCATGCGAACAGGCCGCCA 112826 Query 48585 AAATTGTTGTCTAGCACGTATTGACCTTTGTCCATAACAGA----TTGTACACTATCGTA 48640 | | || | || ||||||| ||||||| | || || || |||| |||||| Sbjct 112827 AGCTGATTAGCCAGAACGTATTTACCTTTGGCAATCACTGAACGGTTGT----CATCGTA 112882 Query 48641 ACTGATGAGATCACC 48655 | |||| | |||||| Sbjct 112883 AGTGATCAAATCACC 112897 >seq742 Length=196864 Score = 203 bits (224), Expect = 3e-47 Identities = 954/1486 (64%), Gaps = 63/1486 (4%) Strand=Plus/Minus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 ||||| ||||| || | ||||| | | || ||||| || | ||| || ||||| || Sbjct 48921 TTGTCAACGGTGAACTGGATAGCATTTACGGCAGGCTTTGTTCTCAAGTAATACATTCCA 48862 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 || ||||| || | ||||| | | ||| || | || | | | ||||| |||| Sbjct 48861 GTCTTCAAGCCCATCTTCCAGCCATAGAAGTGGATAGAAGTGAGCTTTCCGTAGTTGGGC 48802 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 | || || || || || |||||||| |||||||||| || || ||||| ||| Sbjct 48801 TCTGCCACGTGTATGTTGAAGGACTGACTTTGGTCAATAAAGGCTCCTCGGTCGGCTGCC 48742 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || |||| |||| |||||||| || || ||||| || ||||| | ||| Sbjct 48741 ATCTTGATCAGTATTTTGTTGGAAATTTCCCAAACTGTCTTGTAGAGATCTCTGATGTGC 48682 Query 129019 TTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATC 129078 || |||||| || | ||| || | | |||||||| ||||| || ||| ||| Sbjct 48681 TTGGGTATTCTGTCCAGGTTTTGAATGGATCCGTTGTTGGCAATGATGAGATTTTTCATG 48622 Query 129079 TGTTCGTTGTACAAATTCAGTTT-GATCAAATCGTCGGTCAAGTATTTGTTTATT----A 129133 | |||| |||||| ||| | | ||||||| || |||| || | ||| | Sbjct 48621 TCGTCGTCCCACAAAT-CAGCCTCGGTCAAATCA-CGC---AGTAGATGGTGATTCACAA 48567 Query 129134 CTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACG 129193 | || || || || | ||| || | | ||| |||||| ||||| || ||||| | Sbjct 48566 CCTGGAATTCTCCAGACAAGACCCTTCTGGTGTAGATGTTGGAAGTGAAGGGTTCAAAGG 48507 Query 129194 ATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCG 129253 |||| ||||| ||||| || || || || | ||||| |||||| || | |||| Sbjct 48506 ATTCGTTGTTTCCTAAAATCTGGGCGGTGGAGGCGGTAGGCATGGGTGCGAGAAGCAGCG 48447 Query 129254 AGTTTCGCAAACCGTGCTGTTTAATG-TCttt--ttttAATTGTGTCCAGTCCCACATCG 129310 |||| | | ||||| | | | |||| ||| || | ||||| ||||| Sbjct 48446 AGTTCCTGACTCCGTG---TATCGCGATCTTAGCTTTCAAGGCAGCCCAGTTCCACAAAT 48390 Query 129311 ATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGAC----TG 129366 ||| || | | | ||||| || ||||| | || || ||| | |||| || Sbjct 48389 CTGTAGGCTTCTTGTCCCACATCTCATATTGAAGAATCCCTTTGCTGACAGGACATCCTG 48330 Query 129367 GAAAAGTAGGAATCGTGCACGCCGTAAGCTTTT--GCCAATTCGCAACTCGCTTCCAATG 129424 | ||| | |||| || | ||| | |||| |||||||| ||||||| | Sbjct 48329 G----GTACGTCTCGTATGTACCCTC--CTTCTCGGCCAGCTCGCAACTTGCTTCCAGAG 48276 Query 129425 CGCCAAAATAAATTGTTTCGGCAAT-TTTGGTG-TTCAACACTTTGGCCTGGTCGCTTTC 129482 | || |||| | ||| || ||| |||| || |||| | | ||| | || || || Sbjct 48275 CACCGTAATACAATGTCTCA--AATATTTGTTGATTCAGAAGCTGGGCTTTTTCACTCTC 48218 Query 129483 GTACGGCATACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGG 129542 | |||| | || | | |||| | || |||| ||||| || || | ||||||||| Sbjct 48217 AAAAGGCAATCTCATTAAGACAAAAGCATCTGCCAGGCCTTGTATTCCAATACCGATGGG 48158 Query 129543 TCGATGTTTTCTATTGGATTTTTGTGC--CGACAACAAGGGATAGTAGTTGATGTCTATA 129600 || || | || ||| || || | ||| || | | |||| | ||| ||| Sbjct 48157 GCGGTGACGCATGTTCGATGTTCTAGCTTCTGGTACAGGGTAAA--AGTTAACGTCGATA 48100 Query 129601 ATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTAC 129660 |||||||| ||||| || ||| | || |||||| || | | ||||||| | | | Sbjct 48099 ATTTTGTTCAAATTTTTAGTGACAGTCTTGGTTACGATCTTCAGCTTTTCAAAGTCGAA- 48041 Query 129661 TCGCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCA 129720 ||| | | || ||||| ||||||| || ||||||||||||||||| || Sbjct 48040 -----TACCTTATTATCTACAAACATATTGACAGCGATAGAGGCCAAATTGCAGACAGCT 47986 Query 129721 CTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTG 129780 ||| | |||| | |||| || || ||||| | ||| | ||||| ||||| || Sbjct 47985 ACTTCATCTTTGGAAGTGTATTCAACTATTTCTGTGCAGAGGTTACTGCACTTAATAGTT 47926 Query 129781 CCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTG 129840 |||| || | ||| || || || |||||| || || ||||||| |||||| || || Sbjct 47925 CCCAGATTTTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGTACAGCATGTAGGGGGTT 47866 Query 129841 CCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAAC-AAGTCTCGAGCCTTGATCT--GT 129897 |||||||| ||||| | ||||| |||| | | || |||||| | |||||||||| | Sbjct 47865 CCCGTTTCTACTTGAGATTCGATGATGGCCATCCACAAAGTCT-GCGCCTTGATCTTCTT 47807 Query 129898 CTTACAAATTTGCCACATT---TCTCGTATGCCACATACAGTTGTTCAAATTC-TGAGCC 129953 |||| || | || || ||||| ||||| |||||||| | || Sbjct 47806 CTTAGAA-----CGACCTTCGGCTTCGTAGCGTGTGTACAGAGCCTCAAATTCTTCTCCC 47752 Query 129954 GTGTAC-GGTGTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCG 130012 | || |||| ||| || | || | || ||||| | |||||| || | | Sbjct 47751 CAGCACTCGTGT-AAGC-CGGGAGCATCGTGGGGGCACATGAGACTCCA-ATCCTCGTTG 47695 Query 130013 CT-TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCT 130071 || ||||| || ||||| |||| |||||| | ||||| | |||| || || || || || Sbjct 47694 CTCTCGACACGCTTCATGAACAGATCGGGGATCCACAAGCCGTAGAATAAGTCACGTGCA 47635 Query 130072 TTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGC 130131 ||||| || | || ||||| || | ||| || | ||||| |||||| Sbjct 47634 CGAACTTCCTCCTTTCCAGTATTCTTTTTCAAGTCTAAGAATTCAAATATGTCCGCGTGC 47575 Query 130132 CACGGTTCAACATAAATTGCCATTGCGCC---CTTCCGTTTGCCCCCTTGGTCAACGTGG 130188 ||||| ||||| ||||| || | || || | || || || || ||||| || | | Sbjct 47574 CACGGCTCAACGTAAATAGCGAAAGCTCCGGGCCTCTTGTTTCCTCCCTGGTCTACATAG 47515 Query 130189 CGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGG 130234 || | | || ||||| || |||| ||| | |||| || |||| Sbjct 47514 CGGGCCGTGTTATTGTACACACGCAGCATGGGGACCAACCCATTGG 47469 >seq8056 Length=34938 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||||| ||||| || ||| |||| | || || || || | Sbjct 31903 ATGCAGATTTTCGTGAAAACTTTGACCGGAAAGACGATCACATTGGAGGTTGAGCCCTCA 31962 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || |||||||||||||| || || ||||| || |||||| Sbjct 31963 GATACGATCGAAAATGTAAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCGGATCAA 32022 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || || || ||||| ||||| ||| |||||| | ||||||||||| Sbjct 32023 CAACGTCTTATCTTCGCTGGAAAACAATTAGAAGATGGTCGCACCCTTTCCGATTACAAT 32082 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | ||||| || | || | || ||||| Sbjct 32083 ATCCAGAAGGAGTCGACCCTCCATTTGGTGCTCCGTCTCCGAGGAGG 32129 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || ||||| || || || |||| || || || ||| || | Sbjct 32131 ATGCAGATCTTCGTCAAGACATTAACTGGCAAGACAATCACCCTGGAGGTCGAACCCTCA 32190 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| ||||||||||| ||||| || || || || ||||| Sbjct 32191 GATACTATTGAAAACGTCAAGGCCAAAATTCAAGATAAGGAAGGCATCCCCCCAGATCAG 32250 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || ||||| ||| | || ||| || ||| ||||||| |||||| Sbjct 32251 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGACGTACCCTCTCCGACTACAAC 32310 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| |||||||| ||| | ||| | || ||||| | || |||||| Sbjct 32311 ATTCAGAAAGAATCTACCCTTCATCTTGTATTGCGTCTCCGAGGAGGT 32358 >seq48539 Length=7100 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || ||||| || || || || ||| | ||| | || ||||| | Sbjct 6256 AACATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATAACTTTGGAGGTGGAGCCT 6315 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 ||||||| | || | | || ||||||||||||||| || ||||| || || ||| Sbjct 6316 TCCGATACGATTGAAAACGTGAAGGCAAAAATTCAAGACAAAGAAGGTATCCCTCCAGAT 6375 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || || || ||||| ||||| || || ||| ||| ||||||||||| Sbjct 6376 CAGCAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGACGGCCGAACCCTCTCCGATTAC 6435 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| ||||||||| | || || || | || | || ||||| Sbjct 6436 AATATCCAAAAGGAATCCACCCTCCACTTGGTGCTCCGTCTCCGAGGAGG 6485 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || || ||||| |||| | ||||| ||| || | Sbjct 6715 ATGCAGATTTTTGTCAAGACCCTTACTGGCAAAACCATCACCTTGGAAGTTGAACCCTCA 6774 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || |||||||||||||| || ||||| || ||||| Sbjct 6775 GATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCAG 6834 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || || || || ||| || ||| | || || |||||| Sbjct 6835 CAGAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCGGACTACAAC 6894 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || || ||| | || || || | || |||| || || Sbjct 6895 ATTCAAAAGGAGTCAACCCTTCACTTGGTCCTCCGTCTGCGTGGTGG 6941 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || | ||||| ||||| || | | Sbjct 6487 ATGCAGATCTTCGTAAAGACCCTTACCGGAAAGACTATTACTCTAGAAGTTGAGCCTTCT 6546 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| || || ||||||||||| || || || || ||||| Sbjct 6547 GACACAATTGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCAGATCAG 6606 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || || ||||| |||||| |||||| | ||||| ||||| Sbjct 6607 CAGAGGTTGATCTTCGCAGGAAAGCAGTTGGAGGATGGACGCACCCTTTCCGACTACAAT 6666 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||||||||| ||| | || || || | || |||| || || Sbjct 6667 ATCCAAAAAGAATCTACCCTTCACTTGGTCCTCCGTCTGCGTGGTGG 6713 >seq8521 Length=40141 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || || |||| || || || || || || Sbjct 2475 ATGCAGATCTTCGTCAAGACTCTGACTGGGAAGACAATCACCCTCGAGGTTGAGCCCTCC 2534 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || ||||||||||| |||||||| || ||||| Sbjct 2535 GACACCATAGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 2594 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| || ||| | || ||| || ||| | || || |||||| Sbjct 2595 CAGAGGTTGATCTTCGCCGGAAAGCAGCTGGAAGATGGACGTACCCTTTCTGACTACAAC 2654 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || || | ||| | || | || |||| || ||| Sbjct 2655 ATCCAGAAAGAGTCTACACTCCATCTCGTCCTTCGTCTGCGTGGTGGT 2702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419375884147210