Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq4413 100 7e-18 seq15467 78.8 2e-11 >seq4413 Length=54690 Score = 100 bits (110), Expect = 7e-18 Identities = 217/322 (67%), Gaps = 7/322 (2%) Strand=Plus/Minus Query 3160 CTGCACGCGCAAAACTCTTACGCCTACAAATACTTTGGCTGCGAGCTGCTAAACTTTGTC 3219 || ||| |||| || | |||||| ||| || ||| ||| || |||| ||||| ||| Sbjct 41155 CTCCACACGCACAAATATTACGCTTACCGATTCTTCATCTGTGAAATGCTCAACTTCGTC 41096 Query 3220 AACGTTGTCGCACAGATATGCTTCATGAATGCCTTTATAGGCGAAGACTTTTTGTTGTAC 3279 ||||| || | ||||| | ||||||| | |||| | | || ||| || | |||| Sbjct 41095 AACGTCGTTGGGCAGATCTACTTCATGGACTTCTTTCTGGACGGAGAGTTCTCCACGTAC 41036 Query 3280 GGAATCTATGTTACCTTCTTCAACCAGGAAGCCGCCCATCCGAACATGACGAA--CCCCA 3337 || | | || | |||| | || | | ||| ||| | ||| ||| | Sbjct 41035 GGCAGTGACGTGGTCAGGTTCACCGAG-ATGGAGCCT----GAAGAGAGAGAAGACCCGA 40981 Query 3338 TGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCGGGCT 3397 || |||| ||||| | | |||| |||||| || ||||||||||||||||| || Sbjct 40980 TGTCTAGAGTGTTTCCTAAAGTCACAAAATGTACGTTCCACAAATACGGTCCTTCTGGAG 40921 Query 3398 CCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCT 3457 || | || | ||| ||||||||| || | ||| ||| | || || |||||||||| Sbjct 40920 GAGTGCAGAAGTTCGACGGACTCTGCGTCTTGCCGCTGAATATCGTGAATGAGAAGATCT 40861 Query 3458 ACATTTTCCTCTGGTTCTGGTT 3479 || | ||| | ||||||||||| Sbjct 40860 ACGTGTTCTTGTGGTTCTGGTT 40839 >seq15467 Length=27820 Score = 78.8 bits (86), Expect = 2e-11 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3410 ACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCT 3469 |||| | ||||||||||| || |||||| |||||||||||||| ||||| || |||| Sbjct 720 ACGACGCTCTCTGCATCCTTCCTCTGAACGTCGTCAACGAGAAGATATACATCTTTCTCT 779 Query 3470 GGTTCTGGTTC 3480 ||||||||||| Sbjct 780 GGTTCTGGTTC 790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12470604159000