Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq223 145 6e-30
seq8056 127 2e-24
seq48539 100 2e-16
seq15643 82.4 6e-11
>seq223
Length=511576
Score = 145 bits (160), Expect = 6e-30
Identities = 327/489 (67%), Gaps = 13/489 (3%)
Strand=Plus/Minus
Query 20438 TCATTGCTGCATATTTTGTAGAATGGGGCGTTTATCCTAGACAATTTCCCGTCGACAAGG 20497
|| ||| ||||||||||| || |||||||| ||| | | ||| |||| || ||
Sbjct 113978 TCGTTGGCGCATATTTTGTTGAGTGGGGCGTGTATGGTCGCGGATTCTCCGTGGATAAAA 113919
Query 20498 TACCCGTTCCCAATTTGTCTCATCTGCTATATGGCTTTGTGCCAATTTGCGGCGGAGATG 20557
| || | | || || | ||| | | || ||||| ||| ||||||||||| || |
Sbjct 113918 TCCCTGCGCAGAACCTGACACATATCTTGTACGGCTTCACGCCGATTTGCGGCGGGGACG 113859
Query 20558 GTATCAACGACGCGTTAAAGTTGTCCCAGCC----GGATAGTTATTTAGCTTTGCAACGT 20613
| || |||||| ||||| ||| || |||| | || ||||||||
Sbjct 113858 GGATTAACGACAGTTTAAAA-------AGCATTGAGGGCAGTTTTCAGGCCTTGCAACGC 113806
Query 20614 TCGTGCGCGGGCCGAGATAATTTTAAAGTTGCCATACACGATCCTTGGGCCGCTCTACAG 20673
| || ||||| || | ||||||||||||| ||||||||||| ||||| || | |||
Sbjct 113805 GCCTGTGCGGGGCGTCAGGATTTTAAAGTTGCGATACACGATCCCTGGGCTGCGGTGCAG 113746
Query 20674 AAACCACAAAAAGGAGTATCCTCTTGGAACGAACCGTACAAAGGAAACTTTGGTCAGTTG 20733
| || || |||| || | | ||| || ||||| || ||||||||| ||
Sbjct 113745 ATGCCTCAGCAAGGCGTCAGTGAATATTCAGCACCTTATAAAGGTAATTTTGGTCAGCTG 113686
Query 20734 ATGGCAACGAAACTGGCGTATCCTCATCTTAAAGTGCTACCTTCGATCGGCGGGTGGACT 20793
||||| |||| || ||||| | || ||| | | ||||| ||||| || |||||
Sbjct 113685 ATGGCGCTGAAAAAAGCCTATCCAAACCTGAAAATTGTCCCTTCCATCGGTGGCTGGACG 113626
Query 20794 TTATCCGATCCGTTTTATCATATGCACGATCCGATCGTA-CGCCAAGTTTTCATCGATTC 20852
|| || || ||||| ||| ||| | ||| | || | || | || ||| | | ||
Sbjct 113625 TTGTCAGACCCGTTCTATTTCATGAAGGATAAGG-CGAAGCGGGACGTCTTCGTAGCCTC 113567
Query 20853 TGTGGAAGAGTTTTTGTTGACGTGGAAATTCTTTGACGGCGTTGACATAGACTGGGAGTT 20912
|| |||| || || || ||||| ||||||||||| || || || |||||||| ||
Sbjct 113566 GGTAAAAGAATTCCTGCAAACCTGGAAGTTCTTTGACGGTGTGGATATTGACTGGGAATT 113507
Query 20913 TCCGGGAGG 20921
|||||| ||
Sbjct 113506 TCCGGGCGG 113498
>seq8056
Length=34938
Score = 127 bits (140), Expect = 2e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233
|| ||||| | || || || || || || ||||||||| | || ||| ||||||
Sbjct 32111 ACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAAAGGGTGCGACCATCTTCT 32052
Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293
| |||||| |||||| |||| ||||| ||||| ||||||||||| ||||||||||| |
Sbjct 32051 AATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGAATTCCTTCTTTGTCTTGA 31992
Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353
|| || |||| | ||| | || || | || || || |||| || | ||| ||
Sbjct 31991 ATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAACCTCCAATGTGATCGTCTTT 31932
Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
||||||| |||||| || ||||||||||||
Sbjct 31931 CCGGTCAAAGTTTTCACGAAAATCTGCATG 31902
Score = 102 bits (112), Expect = 7e-17
Identities = 163/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || || | ||| || | ||| | ||||||||||| ||||||||||| |||
Sbjct 32360 ATACCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCG 32301
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||||| |||||| || || || |||||| | || | | ||| || || ||
Sbjct 32300 GAGAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGG 32241
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| |||||||| || || ||| || || | | ||||| || || | || ||||
Sbjct 32240 GGGATGCCTTCCTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCG 32181
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386
|| |||| ||| | || ||||| || | || || || || ||||||||| ||
Sbjct 32180 ACCTCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCATGCCT 32127
>seq48539
Length=7100
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | | || || || | || || || |||||||||||||| ||
Sbjct 6944 ATTCCACCACGCAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCC 6885
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||||| |||||| | ||| || || || |||| | | ||| || || ||
Sbjct 6884 GAAAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGG 6825
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| ||||| |||||| || | | ||||| ||| || | || |||
Sbjct 6824 GGAATTCCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCA 6765
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||| | |||||||| || || || || ||||||||||||||
Sbjct 6764 ACTTCCAAGGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATCTGCAT 6715
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| ||||| ||||| || ||||||||| | || || ||||| | || || |||
Sbjct 6455 GTGGATTCCTTTTGGATATTGTAATCGGAGAGGGTTCGGCCGTCTTCCAACTGCTTGCCA 6396
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| | || || | ||| || || ||||| || ||||||||||| ||| ||| ||
Sbjct 6395 GCGAAAATCAGCCTCTGCTGATCTGGAGGGATACCTTCTTTGTCTTGAATTTTTGCCTTC 6336
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | ||||| || |||| | || || |||| || | ||| ||||| |||| |||
Sbjct 6335 ACGTTTTCAATCGTATCGGAAGGCTCCACCTCCAAAGTTATCGTCTTGCCAGTCAAGGTT 6276
Query 114366 TTTACAAAAATCTGCATG 114383
|| || ||||||||||||
Sbjct 6275 TTCACGAAAATCTGCATG 6258
>seq15643
Length=27379
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| || || |||| | ||||| || | || || || || || || ||||||||
Sbjct 12274 ACCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGA 12215
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
| ||||| ||| || || ||||| || ||| |||| | | ||| || || |||||
Sbjct 12214 AAGGGTACGTCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGG 12155
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
|| ||||||||||| ||||| ||| | | ||| | ||||| | || || ||
Sbjct 12154 GATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTAC 12095
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | ||| | ||||| || || || || || || |||||||||||
Sbjct 12094 CTCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 12047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419781943212408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |