Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq223 145 6e-30 seq8056 127 2e-24 seq48539 100 2e-16 seq15643 82.4 6e-11 >seq223 Length=511576 Score = 145 bits (160), Expect = 6e-30 Identities = 327/489 (67%), Gaps = 13/489 (3%) Strand=Plus/Minus Query 20438 TCATTGCTGCATATTTTGTAGAATGGGGCGTTTATCCTAGACAATTTCCCGTCGACAAGG 20497 || ||| ||||||||||| || |||||||| ||| | | ||| |||| || || Sbjct 113978 TCGTTGGCGCATATTTTGTTGAGTGGGGCGTGTATGGTCGCGGATTCTCCGTGGATAAAA 113919 Query 20498 TACCCGTTCCCAATTTGTCTCATCTGCTATATGGCTTTGTGCCAATTTGCGGCGGAGATG 20557 | || | | || || | ||| | | || ||||| ||| ||||||||||| || | Sbjct 113918 TCCCTGCGCAGAACCTGACACATATCTTGTACGGCTTCACGCCGATTTGCGGCGGGGACG 113859 Query 20558 GTATCAACGACGCGTTAAAGTTGTCCCAGCC----GGATAGTTATTTAGCTTTGCAACGT 20613 | || |||||| ||||| ||| || |||| | || |||||||| Sbjct 113858 GGATTAACGACAGTTTAAAA-------AGCATTGAGGGCAGTTTTCAGGCCTTGCAACGC 113806 Query 20614 TCGTGCGCGGGCCGAGATAATTTTAAAGTTGCCATACACGATCCTTGGGCCGCTCTACAG 20673 | || ||||| || | ||||||||||||| ||||||||||| ||||| || | ||| Sbjct 113805 GCCTGTGCGGGGCGTCAGGATTTTAAAGTTGCGATACACGATCCCTGGGCTGCGGTGCAG 113746 Query 20674 AAACCACAAAAAGGAGTATCCTCTTGGAACGAACCGTACAAAGGAAACTTTGGTCAGTTG 20733 | || || |||| || | | ||| || ||||| || ||||||||| || Sbjct 113745 ATGCCTCAGCAAGGCGTCAGTGAATATTCAGCACCTTATAAAGGTAATTTTGGTCAGCTG 113686 Query 20734 ATGGCAACGAAACTGGCGTATCCTCATCTTAAAGTGCTACCTTCGATCGGCGGGTGGACT 20793 ||||| |||| || ||||| | || ||| | | ||||| ||||| || ||||| Sbjct 113685 ATGGCGCTGAAAAAAGCCTATCCAAACCTGAAAATTGTCCCTTCCATCGGTGGCTGGACG 113626 Query 20794 TTATCCGATCCGTTTTATCATATGCACGATCCGATCGTA-CGCCAAGTTTTCATCGATTC 20852 || || || ||||| ||| ||| | ||| | || | || | || ||| | | || Sbjct 113625 TTGTCAGACCCGTTCTATTTCATGAAGGATAAGG-CGAAGCGGGACGTCTTCGTAGCCTC 113567 Query 20853 TGTGGAAGAGTTTTTGTTGACGTGGAAATTCTTTGACGGCGTTGACATAGACTGGGAGTT 20912 || |||| || || || ||||| ||||||||||| || || || |||||||| || Sbjct 113566 GGTAAAAGAATTCCTGCAAACCTGGAAGTTCTTTGACGGTGTGGATATTGACTGGGAATT 113507 Query 20913 TCCGGGAGG 20921 |||||| || Sbjct 113506 TCCGGGCGG 113498 >seq8056 Length=34938 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || || || || || || ||||||||| | || ||| |||||| Sbjct 32111 ACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAAAGGGTGCGACCATCTTCT 32052 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | |||||| |||||| |||| ||||| ||||| ||||||||||| ||||||||||| | Sbjct 32051 AATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGAATTCCTTCTTTGTCTTGA 31992 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 || || |||| | ||| | || || | || || || |||| || | ||| || Sbjct 31991 ATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAACCTCCAATGTGATCGTCTTT 31932 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||||||| |||||| || |||||||||||| Sbjct 31931 CCGGTCAAAGTTTTCACGAAAATCTGCATG 31902 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | ||| || | ||| | ||||||||||| ||||||||||| ||| Sbjct 32360 ATACCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCG 32301 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| |||||| || || || |||||| | || | | ||| || || || Sbjct 32300 GAGAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGG 32241 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| || || ||| || || | | ||||| || || | || |||| Sbjct 32240 GGGATGCCTTCCTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCG 32181 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| ||| | || ||||| || | || || || || ||||||||| || Sbjct 32180 ACCTCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCATGCCT 32127 >seq48539 Length=7100 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || || || |||||||||||||| || Sbjct 6944 ATTCCACCACGCAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCC 6885 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| |||||| | ||| || || || |||| | | ||| || || || Sbjct 6884 GAAAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGG 6825 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || | | ||||| ||| || | || ||| Sbjct 6824 GGAATTCCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCA 6765 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | |||||||| || || || || |||||||||||||| Sbjct 6764 ACTTCCAAGGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATCTGCAT 6715 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| ||||| || ||||||||| | || || ||||| | || || ||| Sbjct 6455 GTGGATTCCTTTTGGATATTGTAATCGGAGAGGGTTCGGCCGTCTTCCAACTGCTTGCCA 6396 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || || | ||| || || ||||| || ||||||||||| ||| ||| || Sbjct 6395 GCGAAAATCAGCCTCTGCTGATCTGGAGGGATACCTTCTTTGTCTTGAATTTTTGCCTTC 6336 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| || |||| | || || |||| || | ||| ||||| |||| ||| Sbjct 6335 ACGTTTTCAATCGTATCGGAAGGCTCCACCTCCAAAGTTATCGTCTTGCCAGTCAAGGTT 6276 Query 114366 TTTACAAAAATCTGCATG 114383 || || |||||||||||| Sbjct 6275 TTCACGAAAATCTGCATG 6258 >seq15643 Length=27379 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || |||| | ||||| || | || || || || || || |||||||| Sbjct 12274 ACCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGA 12215 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||||| ||| || || ||||| || ||| |||| | | ||| || || ||||| Sbjct 12214 AAGGGTACGTCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGG 12155 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || ||||||||||| ||||| ||| | | ||| | ||||| | || || || Sbjct 12154 GATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTAC 12095 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||||| || || || || || || ||||||||||| Sbjct 12094 CTCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 12047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419781943212408