Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq742 219 8e-52 seq6691 165 2e-35 >seq742 Length=196864 Score = 219 bits (242), Expect = 8e-52 Identities = 525/786 (67%), Gaps = 20/786 (3%) Strand=Plus/Minus Query 244664 ACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTG 244723 |||||| |||| |||| ||||| |||||||| || || || || | ||| Sbjct 48027 ACAAACATATTGACAGCGATAGAGGCCAAATTGCAGACAGCTACTTCATCTTTGGAAGTG 47968 Query 244724 TACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTG 244783 || | || || || |||||||||||||||||||| || || ||||| | || || ||| Sbjct 47967 TATTCAACTATTTCTGTGCAGAGGTTACTGCACTTAATAGTTCCCAGATTTTGTTGGTTG 47908 Query 244784 GACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCG 244843 ||| |||||| ||||||||||| |||||| |||| || || || | || | Sbjct 47907 CTCTTTCGGTTGCACGCGTCCTTGTACAGCATGTAGGGGGTTCCCGTTTCTACTTGAGAT 47848 Query 244844 ACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCC 244903 ||| || | |||| | | ||||||| | || | || || || || Sbjct 47847 TCGATGATGGCCATCCACAAAGTCTGCGCCTTGATCTTCTTCTTAGAACGACCTTCGGCT 47788 Query 244904 TCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGG-GCA 244962 |||||||| |||||||| ||||| || || |||||| ||||| || |||||| ||| Sbjct 47787 TCGTAGCGTGTGTACAGAGCCTCAAATTCTTCTCCCCAGCACTCGTGTAAGCCGGGAGCA 47728 Query 244963 -CGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGT 245021 || | ||||||||||||||||| || || | || ||| | || |||||| || | Sbjct 47727 TCGTGG--GGGCACATGAGACTCCAATCCTCGTTGCTCTCGACACGCTTCATGAACAGAT 47670 Query 245022 CGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCT 245081 |||||||||| | | | | ||| | ||| | | | || ||| ||||| |||| Sbjct 47669 CGGGGATCCACAAGCCGTAGAATAAGTCACGTGCACGAACTTCCTCCTTTCCAGTATTCT 47610 Query 245082 TCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGG 245141 | ||| || || || ||||| | ||| ||||||| ||||| | ||| | ||||| | Sbjct 47609 TTTTCAAGTCTAAGAATTCAAATATGTCCGCGTGCCACGGCTCAACGTAAATAGCGAAAG 47550 Query 245142 CGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC-GCGTT---GAAGATG 245197 | ||||||| |||||| ||||||||||| || | || || | ||| | | | Sbjct 47549 CTCCGGGCCTCTTGTTTCCTCCCTGGTCTACA----TAGCGGGCCGTGTTATTGTACACA 47494 Query 245198 CGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTG 245257 ||||| | || || | || || ||| ||||| || ||| |||||||| |||||| Sbjct 47493 CGCAGCATGGGGACCAACCCATTGGAGACTCCGTTAGTACCCGCGATGTAGGAACCCTTG 47434 Query 245258 CCCCTGAGGTTGCTGATGGACATG----CCTAGTCCGCCGGCGTGCTTGGAGATGAGGGC 245313 | | || ||| | || ||||| || | || || || |||||| | ||||| Sbjct 47433 GCTCGGA---TGCAG-TGTACATGAAGGCCGATACCTCCAGCAGACTTGGAAACCAGGGC 47378 Query 245314 GCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAA 245373 || ||| | |||||| || || || || || || ||||| || || || Sbjct 47377 ACACTGCTTCAGGGTGTCGTAGATCCCTTCAATACTATCATCGCTCATGGCCAGTAGGAA 47318 Query 245374 GCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGT 245433 ||| || |||||||| || ||| || | | ||| ||||| ||||||||||| || Sbjct 47317 GCAAGAAGACAGCTGAGGACGGGGCGTGGCTGCGGAGAATAGAGTAGGGCTGGCGTGAGT 47258 Query 245434 AAAGTA 245439 ||||| Sbjct 47257 GAAGTA 47252 >seq6691 Length=42033 Score = 165 bits (182), Expect = 2e-35 Identities = 355/523 (68%), Gaps = 11/523 (2%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| || ||||||| | || || | ||||||||||| |||||||| || | Sbjct 14454 CTTTTCAACGCTGTGGAGACCCTACCGTGTGTGAAGAAGAAGGCAGACTGGGCCCTGCAG 14395 Query 42669 TGGATCG--AGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCG 42726 ||||||| || | | || || || ||||| ||| | |||| ||||| | ||| | Sbjct 14394 TGGATCGGCAGCGACACG--GCCACCTTCGGGGAGCGTGTGGTGGCCTTCGCTTGCGTAG 14337 Query 42727 AGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCG 42785 | || ||||||||||| ||| || ||||||||||| ||||| ||| || || || Sbjct 14336 AAGGAATCTTCTTCTCCGGCAGTTTTGCCTCCATCTTTTGGCTGAAGAAGCGTGGCCTC- 14278 Query 42786 ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGAC 42845 |||||||| | |||||| ||||| | ||| | | |||||||| || || | ||| Sbjct 14277 ATGCCCGGCTTGACCTTCAGCAACGAGTTGATCTCCCGAGACGAGGGTCTCCACTGCGAC 14218 Query 42846 TTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGG 42905 |||||||||||| ||||| | ||| | || || ||| | || |||| Sbjct 14217 TTTGCCTGCCTCATGTTC---AAACACTTAGTACAGAAACCCAGCCCCGCACGAGTCCTA 14161 Query 42906 GCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG 42965 || ||| ||| ||| || || || || | ||||| ||||| | | |||||||| Sbjct 14160 GCTATCGTCAAGGATGCTGTCATCATTGAACAAGAGTTTCTCACCGACGCCCTGCCCGTC 14101 Query 42966 TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCAT 43025 || | ||||||||| |||||| |||| |||| || | | || ||||||| Sbjct 14100 AGACTACTGGGCATGAACTGCGACCTGATGTCGCAGTATATTGAATTTGTGGCCGACCGG 14041 Query 43026 CTCCTGTGCCAGATGGGTCTCAGCC-GCCTCTACAACACGCCGTGCCCCTTCGACTTTAT 43084 ||| || | |||| || ||| | |||| | | ||||||| ||| || Sbjct 14040 CTCTTGGTGGACCTGGG-CTGTGCCAAGCACTACGGATCCAAGAACCCCTTCAGCTTCAT 13982 Query 43085 GGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAG 43127 ||| | ||||| |||| |||||||||||||| ||||||||| Sbjct 13981 GGACATGATCTCCCTGGAAGGCAAGACCAACTTCTTCGAGAAG 13939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943526666943840