Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_009542.2 Length=33985 Score E Sequences producing significant alignments: (Bits) Value seq14927 93.3 9e-15 seq19589 84.2 5e-12 >seq14927 Length=58641 Score = 93.3 bits (102), Expect = 9e-15 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 13897 TCCCCGGTCCAGAACCGGTACGCCTCGTGCACCT-TGCTCGACGGGGTCGAGAAGTAGGT 13955 || || | ||||||| | ||||| ||||| | |||| |||||||| ||||| ||||| Sbjct 43360 TCTCCTGACCAGAACGGATACGCGCCGTGCGTCAGTGCT-GACGGGGTGGAGAAATAGGT 43302 Query 13956 CTTGCGCCAGTGGCTCTGGGTCGCCATGGCACTGGCCACATCAGACAGCTTCTCGAAGTT 14015 ||||| || ||| | ||||||| | ||||| || | |||||||| ||| || Sbjct 43301 GGTGCGCAGATGTTCCTGCGACGCCATGCCGCTGGCAACCTTGCGCAGCTTCTGGAAATT 43242 Query 14016 GGGGATCCAGAAGTATTCGTCGATGTAGACGTTGCCGGAGCGGGACTGGGCACTGTTGGA 14075 |||||||| ||| |||||| | ||| | || ||| || ||||| ||||||| Sbjct 43241 CGGGATCCAAAAGATTTCGTCCACGTACAGGTCGCCATTATGGCTTTGGGCGGTGTTGGA 43182 Query 14076 GTTGGTGGAGCAGAAGTGCAGCTCGGCCCCGTT 14108 ||||||| |||| ||||| || ||||| Sbjct 43181 GTTGGTGCCTAAGAAAATCAGCTTTGCGCCGTT 43149 >seq19589 Length=24186 Score = 84.2 bits (92), Expect = 5e-12 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 22439 AGCGACTGCGCCGCCCGTTCAGCGTCACCAAAGAGGTGCCCTTTACCGATGTCTGGACCT 22498 ||||| |||| || || |||| || || | || || ||||| || || |||| | Sbjct 18327 AGCGATTGCGGCGGCCTTTCACTGTGACGAGTCTTGTACCATTTACTGACGTGTGGATGT 18386 Query 22499 ACCCCTCGGTGCAGGCTTACCCGGGCAAGCACCCTTGCGAAAAGCCCGCTGCCATGATG- 22557 | || || | | ||| || || || || || ||||||||||| || | |||||| Sbjct 18387 ATAAGTCAGTTCCGTATTATCCCGGTAAACATCCGTGCGAAAAGCCGGCGGAGATGATGA 18446 Query 22558 GAGCACATCGTGCGCACCAGCAGCCGGCCAGGTGATGTTGTTGGAGACTTCTTTATGGGG 22617 ||| ||||| | | |||||||||| || |||||||| |||| || || || ||||| Sbjct 18447 GAG-ACATCATCAACGCCAGCAGCCGACCGGGTGATGTAGTTGCTGATTTTTTCATGGGA 18505 Query 22618 TCTGGTGCCACCGGAAAAGCAGC 22640 || ||| |||| ||||| ||| Sbjct 18506 TCAGGTTCCACGATAAAAGAAGC 18528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108541605103676